These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4504#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence [CCAAATTCCATAATAGTTCTTGTTGCAATAAAAACCAGGACTAAAAAACATCTTTAGTCCCGATTCAAAAGGTTAGAGCTACTTTTTAATCTTTAATCCTAGTTCAAAAAAGGTAGGCGGTGTCAGACCCCTCCTTTACCTTTAATCCCGGTTGGACTAAAGAGCTATTTCTAGTTCCGGTTGTTAAACAACCAGGAAAAAAAAGATCCGCATGCGCGGAGAGGATGAGGCGTGCGCGCAACATCGAGGAGGAGGAGGAGGCGCACGGGATAAGTTAATAAGTTCTATCTCCTCCTCCCTCACCTTTATCTCCTCTCCTCACTCACCCCATCTCTTCCTCTTCCTCCTCTGGATCCGCCCCCCTCCCCTCTCCTCCCCACTTCTCAGGAAGCGGAGGCGGCCTCGCGCAGTGGCGGCGGCCTCGTGTGGAGGACCGCGCCCGGTGGCGGCTTGCGCGGAAGGCCACGCGGCGGCAGGCGGTGGAGGCTGGCGCGGCTGCACGGATTTTTTTTTTCTTTTTTCTTTCTTTGTGTTGAATGATTCGATCTGTGTTGTCTGTGTTGAATGTATGATTCGATCTGTGTTGAGAATGAACTATGTTGTTATGAATGTTGTTGTGAATGATTTGGGAGGAACTATGTTGTTGTGAATGATTTGGGATGACCTATGTTGCTGTGAATGATTTGGGATAATGGACGTGAGGTAT] [+] EMBL AK111483 [CCAAATTCCATAATAGTTCTTGTTGCAATAAAAACCAGGACTAAAAAACATCTTTAGTCCCGATTCAAAAGGTTAGAGCTACTTTTTAATCTTTAATCCTAGTTCAAAAAAGGTAGGCGGTGTCAGACCCCTCCTTTACCTTTAATCCCGGTTGGACTAAAGAGCTATTTCTAGTTCCGGTTGTTAAACAACCAGGAAAAAAAAGATCCGCATGCGCGGAGAGGATGAGGCGTGCGCGCAACATCGAGGAGGAGGAGGAGGCGCACGGGATAAGTTAATAAGTTCTATCTCCTCCTCCCTCACCTTTATCTCCTCTCCTCACTCACCCCATCTCTTCCTCTTCCTCCTCTGGATCCGCCCCCCTCCCCTCTCCTCCCCACTTCTCAGGAAGCGGAGGCGGCCTCGCGCAGTGGCGGCGGCCTCGTGTGGAGGACCGCGCCCGGTGGCGGCTTGCGCGGAAGGCCACGCGGCGGCAGGCGGTGGAGGCTGGCGCGGCTGCACGGATTTTTTTTTTCTTTTTTCTTTCTTTGTGTTGAATGATTCGATCTGTGTTGTCTGTGTTGAATGTATGATTCGATCTGTGTTGAGAATGAACTATGTTGTTATGAATGTTGTTGTGAATGATTTGGGAGGAACTATGTTGTTGTGAATGATTTGGGATGACCTATGTTGCTGTGAATGATTTGGGATAATGGACGTGAGGTAT] consensusID : consensus_4504#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 340 fasta sequence [GTGCTGCGATCGCAAGTACGAGCTTGTCAGCTACGAGCNTACGACGCGCTCCCGGCCTTCCTCAAGCACAACGAGTTCATCATCGACTACTACCGCAGCGAGTGGCCCATCAAGCAGGCGCTCCTCAGCGCCTTAGTCGTCCACAACGAGACCATCTTCCAGACGTAATTAAGCACTCGATCGATCAAAAGCACGTATATTAGCTAAAGACGATACTCTACCAGTAGAGAAACTATCTTTTATCGGTCGACCAAATTCCATAATAGTTCTTGTTGCAATAAAAACCAGGACTAAAAAACATCTTTAGTCCCGATTCAAAAGGTTAAAAAAAAAAAAAAAA] [+] EMBL AU078732 [GTGCTGCGATCGCAAGTACGAGCTTGTCAGCTACGAGCNTACGACGCGCTCCCGGCCTTCCTCAAGCACAACGAGTTCATCATCGACTACTACCGCAGCGAGTGGCCCATCAAGCAGGCGCTCCTCAGCGCCTTAGTCGTCCACAACGAGACCATCTTCCAGACGTAATTAAGCACTCGATCGATCAAAAGCACGTATATTAGCTAAAGACGATACTCTACCAGTAGAGAAACTATCTTTTATCGGTCGACCAAATTCCATAATAGTTCTTGTTGCAATAAAAACCAGGACTAAAAAACATCTTTAGTCCCGATTCAAAAGGTTAAAAAAAAAAAAAAAA] [+] EMBL AU078734 [ ACGACGCGCTCCCGGCCTTCCTCAAGCACAACGAGTTCATCATCGACTACTACCGCAGCGAGTGGCCCATCAAGCA GCGCTCCTCAGCGCCTTAGTCGTCCACAACGAGACCATCTTCCAGACGTAATTAAGCACTCGATCGATCAAAAGCACGTATATTAGCTAAAGACGATACTCTACCAGTAGAGAAACTATCTTTTATCGGTCGACCAAATTCCATAATAGTTCTTGTTGCAATAAAAACCAGGACTAAAAAACATCTTTAGTCCCGATTCAAAAGGTTAAAAAAAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4504#0 CCAAATTCCATAATAGTTCTTGTTGCAATAAAAACCAGGACTAAAAAACATCTTTAGTCC 60 consensus_4504#1 ------------------------------------------------------------ consensus_4504#0 CGATTCAAAAGGTTAGAGCTACTTTTTAATCTTTAATCCTAGTTCAAAAAAGGTAGGCGG 120 consensus_4504#1 ------------------------------------------------------------ consensus_4504#0 TGTCAGACCCCTCCTTTACCTTTAATCCCGGTTGGACTAAAGAGCTATTTCTAGTTCCGG 180 consensus_4504#1 ------------------------------------------------------------ consensus_4504#0 TTGTTAAACAACCAGGAAAAAAAAGATCCGCATGCGCGGAGAGGATGAGGCGTGCGCGCA 240 consensus_4504#1 ------------------------------------------------------------ consensus_4504#0 ACATCGAGGAGGAGGAGGAGGCGCACGGGATAAGTTAATAAGTTCTATCTCCTCCTCCCT 300 consensus_4504#1 ------------------------------------------------------------ consensus_4504#0 CACCTTTATCTCCTCTCCTCACTCACCCCATCTCTTCCTCTTCCTCCTCTGGATCCGCCC 360 consensus_4504#1 ---------------------------------------------GTGCTGCGATCGCAA 15 *** *** consensus_4504#0 CCCTCCCCTCTCCTCCCCACTTCTCAGGAAGCGGAGGCGGCCTCGCGCAGTGGCGGCGGC 420 consensus_4504#1 GTACGAGCTTGTCAGCTACGAGCNTACGACGCGCTCCCGGCCTTCCTCAAGCACAACGAG 75 ** * * * * ** *** ****** * ** * ** consensus_4504#0 CTCGTGTGGAGGACCGCGCCCGGTGGCGGCTTGCGCGGAAGGCCACGCGGCGGCAGGCGG 480 consensus_4504#1 TTCAT--CATCGACTACTACCG-CAGCGAGTGGCCCATCAAGCA-------GGCGCTCCT 125 ** * *** * *** *** * ** * * ** *** * consensus_4504#0 TGGAGGCTGGCGCGGCTGCACGGATTTTTTTTTTCTTTTTTCTTTCTTTGTGTTGAATGA 540 consensus_4504#1 CAGCGCCTTAGTCGTCCACAACGAGACCATCTTCCAGACGTAATTAAGCAC-TCGATCGA 184 * * ** ** * ** ** * ** * * ** * ** ** consensus_4504#0 TTCGATCTGTGTTGTCTGTGTTGAATGTATGATTCGATCTGTGTTGAGAATGAACTATGT 600 consensus_4504#1 TCAAAAGCACGT-ATATTAGCTAAAGACGATACTCTACCAGTA--GAGAA---ACTATCT 238 * * ** * * * * ** * ** * * ** ***** ***** * consensus_4504#0 TGTTATGAATGTTGTTGTGAATGATTTGGGAGGAACTATGTTGTTGTGAATGATTTGGGA 660 consensus_4504#1 T-TTAT-----CGGTCGACCAAATTCCATAATAGTTCTTGTTGCAATAAA-AACCAGGAC 291 * **** ** * * * * ***** * ** * ** consensus_4504#0 TGACCTATGTTGCTGTGAATGATTTGGGATAATGGACGTGAGGTAT--- 706 consensus_4504#1 TAAAAAACATCTTTAGTCCCGATTCAAAAGGTTAAAAAAAAAAAAAAAA 340 * * * * * **** * * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||