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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4510#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence
[ATCATATCATATCATGAACAGGGGGGAGGGAAAGCTACAAATCATGGATGGGCATGGACAGGGGATTTCAGTTTCCCCCCCCTCCCACAAATTTGACATCACTCACATGATCACCAATCAGCTCACTAATTAACACTAAACAACAAGTTAAAAAAATCAAAAAAAAAATAAAACATGGATTAATTAATTAAACAAAAAAAAAAAAGGATTAAGCCTCAATTTGATGGAACAGTAATAAAACAATGCAATGCAATGCAGCTAAACTAAAAATGAGGCTTTTGTTGGCAACGGATTTCTTGATGGGTTGGGTTACTGGAACCGGAGGGGGGGCGGGGGGGGCCCCAAACTCCCCCCCCCGGGGTCGGGGTGCGGGGGGGGCCCCCCCTCCTCCTCCTCTTTTCCGGGGGGGGCGGCGGGGGA]
[+] EMBL CB646019 [ATCATATCATATCATGAACAGGGGGGAGGGAAAGCTACAAATCATGGATGGGCATGGACAGGGGATTTCAGTTTCCCCCCCCTCCCACAAATTTGACATCACTCACATGATCACCAATCAGCTCACTAATTAACACTAAACAACAAGTTAAAAAAATCAAAAAAAAAATAAAACATGGATTAATTAATTAAACAAAAAAAAAAAAGGATTAAGCCTCAATTTGATGGAACAGTAATAAAACAATGCAATGCAATGCAGCTAAACTAAAAATGAGGCTTTTGTTGGCAACGGATTTCTTGATGGGTTGGGTTACTGGAACCGGAGGGGGGGCGGGGGGGGCCCCAAACTCCCCCCCCCGGGGTCGGGGTGCGGGGGGGGCCCCCCCTCCTCCTCCTCTTTTCCGGGGGGGGCGGCGGGGGA]
consensusID : consensus_4510#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence
[TGAAAAGCTACAGTCATGATGTGCCTGGACAGNNCCTCCACAAATTTGACATCACTCACATGATCACCAATCAGCTCACNNAACAGTAGAGAAATAAGAGAAAATAAAAACATGGATTAATTAATTAAACAGAAGAGAGAGAGAGGATTGAGCATCAATTTGATGGAACAGTAGTAGAGCAATGCAATGCAATGCAGCTAAGCTAGAAATGAGCCTTAATTTTGTTGTCAATGGATTTCTTGATGTGTTGGGTTACTGGAGCCGGAGGTGNGTGCGGCTGTGCGGCTGTGCGGCGAGCTCGCGCCGCCGGGGTCGGGGTGCGGCGGCTGCGCCGTCGTCGTCGTCTCCGGCGGCGTGCGGCGGAGGAGGGGTGGACGGTGGCGGCGGGCGAA]
[-] EMBL BQ906472 [TGAAAAGCTACAGTCATGATGTGCCTGGACAGNNCCTCCACAAATTTGACATCACTCACATGATCACCAATCAGCTCACNNAACAGTAGAGAAATAAGAGAAAATAAAAACATGGATTAATTAATTAAACAGAAGAGAGAGAGAGGATTGAGCATCAATTTGATGGAACAGTAGTAGAGCAATGCAATGCAATGCAGCTAAGCTAGAAATGAGCCTTAATTTTGTTGTCAATGGATTTCTTGATGTGTTGGGTTACTGGAGCCGGAGGTGNGTGCGGCTGTGCGGCTGTGCGGCGAGCTCGCGCCGCCGGGGTCGGGGTGCGGCGGCTGCGCCGTCGTCGTCGTCTCCGGCGGCGTGCGGCGGAGGAGGGGTGGACGGTGGCGGCGGGCGAA]
consensusID : consensus_4510#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence
[TCAAGAGAAAAATAAAACATGGATTAATTAATTAAACAAGAGAGAGAGAGGATTAAGCATCAATTTGATGGAACAGTAGTAGAGCAATGCAATGCAATGCAGCTAAGCTAGAAATGAGGCTTTTGTTGTCAACGGATTTCTTGATGTGTTGGGTTACTGGAGCCGGAGGTGGTGCGGCGGCGGCGGCGAGCTCGCGCCGCCGGGGTCGGGGTGCGGCGGCGGCGCGCCGTCGTCGTCGTCGTCTCCGGCGGCGGCGGCGGGGGAGGGGTGGAGGTGGCGGCGGGCGAGGGTGTGCTTGTTGTTGTGCATCCAGACCTTGAGGACGCGGCGCTTG]
[-] EMBL CF325172 [TCAAGAGAAAAATAAAACATGGATTAATTAATTAAACAAGAGAGAGAGAGGATTAAGCATCAATTTGATGGAACAGTAGTAGAGCAATGCAATGCAATGCAGCTAAGCTAGAAATGAGGCTTTTGTTGTCAACGGATTTCTTGATGTGTTGGGTTACTGGAGCCGGAGGTGGTGCGGCGGCGGCGGCGAGCTCGCGCCGCCGGGGTCGGGGTGCGGCGGCGGCGCGCCGTCGTCGTCGTCGTCTCCGGCGGCGGCGGCGGGGGAGGGGTGGAGGTGGCGGCGGGCGAGGGTGTGCTTGTTGTTGTGCATCCAGACCTTGAGGACGCGGCGCTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4510#1 --------------------------------------------TGAAAAGCTACAGTCA 16
consensus_4510#2 ------------------------------------------------------------
consensus_4510#0 ATCATATCATATCATGAACAGGGGGGAGGGAAAGCTACAAATCATGGATGGGCATGGACA 60
consensus_4510#1 TGATGTGCCTGGACAGNNCCTC---CACAAATTTGACATCACTCACATGATCACCAATCA 73
consensus_4510#2 ------------------------------------------------------------
consensus_4510#0 GGGGATTTCAGTTTCCCCCCCCTCCCACAAATTTGACATCACTCACATGATCACCAATCA 120
consensus_4510#1 GCTCACNNAACAGTA----------------GAGAAATAAGAGAAAATAAAAACATGGAT 117
consensus_4510#2 ------------------------------------TCAAGAGAAAAATAAAACATGGAT 24
consensus_4510#0 GCTCACTAATTAACACTAAACAACAAGTTAAAAAAATCAAAAAAAAAATAAAACATGGAT 180
** * **** ***********
consensus_4510#1 TAATTAATTAAACAGAAGAGAGAGAGAGGATTGAGCATCAATTTGATGGAACAGTAGTAG 177
consensus_4510#2 TAATTAATTAAACA--AGAGAGAGAGAGGATTAAGCATCAATTTGATGGAACAGTAGTAG 82
consensus_4510#0 TAATTAATTAAACA--AAAAAAAAAAAGGATTAAGCCTCAATTTGATGGAACAGTAATAA 238
************** * * * * * ****** *** ******************* **
consensus_4510#1 AGCAATGCAATGCAATGCAGCTAAGCTAGAAATGAGCCTTAATTTTGTTGTCAATGGATT 237
consensus_4510#2 AGCAATGCAATGCAATGCAGCTAAGCTAGAAATGAGGCTT----TTGTTGTCAACGGATT 138
consensus_4510#0 AACAATGCAATGCAATGCAGCTAAACTAAAAATGAGGCTT----TTGTTGGCAACGGATT 294
* ********************** *** ******* *** ****** *** *****
consensus_4510#1 TCTTGATGTGTTGGGTTACTGGAGCCGGAGGTGNGTGCGGCTGTGCGGCTGTGCGGCGAG 297
consensus_4510#2 TCTTGATGTGTTGGGTTACTGGAGCCGGAGGTGG-TGCGGCGGCG-------GCGGCGAG 190
consensus_4510#0 TCTTGATGGGTTGGGTTACTGGAACCGGAGGGGG-GGCGGGGGGG-------GCCCCAAA 346
******** ************** ******* * **** * * ** * *
consensus_4510#1 CTCGCGCCGCCGGGGTCGGGGTGCGGCGGCTGCGC-----CGTCGTCGTCGTCTCCGGCG 352
consensus_4510#2 CTCGCGCCGCCGGGGTCGGGGTGCGGCGGCGGCGCGCCGTCGTCGTCGTCGTCTCCGGCG 250
consensus_4510#0 CTCCCCCCCCCGGGGTCGGGGTGCGGGGGGGGCCCCCCCTCCTCCTCCTCTTTTCCGGGG 406
*** * ** ***************** ** ** * * ** ** ** * ***** *
consensus_4510#1 GCGTGCGGCGGAGGAGGGGTGGACGGTGGCGGCGGGCGAA-------------------- 392
consensus_4510#2 GCG-GCGGCGGGGGAGGGGTGGA-GGTGGCGGCGGGCGAGGGTGTGCTTGTTGTTGTGCA 308
consensus_4510#0 GGG-GCGGCGGGGGA--------------------------------------------- 420
* * ******* ***
consensus_4510#1 --------------------------
consensus_4510#2 TCCAGACCTTGAGGACGCGGCGCTTG 334
consensus_4510#0 --------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||