These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4513#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1439 fasta sequence [GTCAATTTGAGCCGACCACCTCTCTCGCAGAACTACATGCAGCTGTTTGGTGTCCTGCTCAGTAATGCTACCTGGGACCGTCCACCGTGTGTCCCTGCCTTGGTTCGGTTGCTGAGAGCATTCCTTCGGAAAATTCCAAATGAGCTTAACCAAGAGGGCAGGCTACCGAATATCTTAGTGATATTCCGCAGTCTCCTTTCGCGGAGCAGTACTGAAGATTCTGCCTTCTACATGCTTAACACACTTGTGGAAAATGTGAGTTTTGACATCATGAATCCTCACATAAATGAGATATGGAGTGCTTTGTTTACTCGACTACAGACAAGGCAGGCAGTGAAGTTTGTGAATTCTCTTGTGGTCTTCATGTCCTTGGTGGTGGTTAAATATGGACCAGGTGTTCTTGTCAGTTCTGTCGATGCAATTCAGCCAAATATTTTCATGACAATCCTTCAGCGCTTTTGGATTCCCAATCTTAAATTCATCAAAGGGACTGTTGAAGTTAAGCTGACATCAGTTGCATCAACGAAGTTGATCTGTGAATCTGCACTGCTGTTGGATGGTGCAGCAGCCCAAACTTGGGGCAAATTGCTTGACAGTATTGTTGCATTGCTGTCCAGAACGGATCAAGATGGGGCACAACAAGATCAGAATGATGGTGCTGATGCAGATAGTCAGAGGACATCAGGTTATTCTGTCTCATTTGTACGTCTTCAATATGCTGGAAAGAGTGAAGATGATCTGTTGAAAGAGGTAAATGATCCAAAGCAGTTTCTGGTCACCTCCTTGGCTACTCTTTCTGCGCAATCTCCAGGGAGATTTGGTCCTATCATTGAGCAGAACGTGGATCCTGCAAACAAAGGCGCTCTTATTCAACTTTGTGCAGCTTACAATACCAACATTGTCTAGGAGCCAATGGCTTTGCTGTAAGGCATTTGCATTGTTTCCATGGGGTTTTGTCAAAGGATGTCTCAGGGGAGTCTATCGGTCGGTCGGTCTATCGGGTCAAGCTGGTCTTCGGTTTCATCCTTGCAATATTTCTGGCATGTGTAGGTTGGTCTTGGGAGAGGAAGGATGTCGAAATCATATAGTGGTGGAAAAACATGAACATTGTGGTGGAGGATGTCTCTTTGATTGGAATTTGGAATTTTCTTTTTTGGTGTGGAAGAGGTTTGTTTCCCCCGGAAAACATGAACATTGTGGAGGATACCCCGAGAATATTGCCAGCGTAGGCATGTGCCATCCTGGTGGAACTTTGCTGTAATTTTTTTGCCCTTGTTGGCTGAATGCCTTGCTCTGGCGTAGGAAATGGTATATGGCGTGGGAGTATATTGTCATCGGTCATCACCCTTTGTTAGGTCGGGTTACAAAAAATATTGCGAACCTCGATTGGAGCTCGCGATCCTGCTGCCATTTGCTCTGTTTTTTGAATGCATTGAGCC] [+] EMBL AK105595 [GTCAATTTGAGCCGACCACCTCTCTCGCAGAACTACATGCAGCTGTTTGGTGTCCTGCTCAGTAATGCTACCTGGGACCGTCCACCGTGTGTCCCTGCCTTGGTTCGGTTGCTGAGAGCATTCCTTCGGAAAATTCCAAATGAGCTTAACCAAGAGGGCAGGCTACCGAATATCTTAGTGATATTCCGCAGTCTCCTTTCGCGGAGCAGTACTGAAGATTCTGCCTTCTACATGCTTAACACACTTGTGGAAAATGTGAGTTTTGACATCATGAATCCTCACATAAATGAGATATGGAGTGCTTTGTTTACTCGACTACAGACAAGGCAGGCAGTGAAGTTTGTGAATTCTCTTGTGGTCTTCATGTCCTTGGTGGTGGTTAAATATGGACCAGGTGTTCTTGTCAGTTCTGTCGATGCAATTCAGCCAAATATTTTCATGACAATCCTTCAGCGCTTTTGGATTCCCAATCTTAAATTCATCAAAGGGACTGTTGAAGTTAAGCTGACATCAGTTGCATCAACGAAGTTGATCTGTGAATCTGCACTGCTGTTGGATGGTGCAGCAGCCCAAACTTGGGGCAAATTGCTTGACAGTATTGTTGCATTGCTGTCCAGAACGGATCAAGATGGGGCACAACAAGATCAGAATGATGGTGCTGATGCAGATAGTCAGAGGACATCAGGTTATTCTGTCTCATTTGTACGTCTTCAATATGCTGGAAAGAGTGAAGATGATCTGTTGAAAGAGGTAAATGATCCAAAGCAGTTTCTGGTCACCTCCTTGGCTACTCTTTCTGCGCAATCTCCAGGGAGATTTGGTCCTATCATTGAGCAGAACGTGGATCCTGCAAACAAAGGCGCTCTTATTCAACTTTGTGCAGCTTACAATACCAACATTGTCTAGGAGCCAATGGCTTTGCTGTAAGGCATTTGCATTGTTTCCATGGGGTTTTGTCAAAGGATGTCTCAGGGGAGTCTATCGGTCGGTCGGTCTATCGGGTCAAGCTGGTCTTCGGTTTCATCCTTGCAATATTTCTGGCATGTGTAGGTTGGTCTTGGGAGAGGAAGGATGTCGAAATCATATAGTGGTGGAAAAACATGAACATTGTGGTGGAGGATGTCTCTTTGATTGGAATTTGGAATTTTCTTTTTTGGTGTGGAAGAGGTTTGTTTCCCCCGGAAAACATGAACATTGTGGAGGATACCCCGAGAATATTGCCAGCGTAGGCATGTGCCATCCTGGTGGAACTTTGCTGTAATTTTTTTGCCCTTGTTGGCTGAATGCCTTGCTCTGGCGTAGGAAATGGTATATGGCGTGGGAGTATATTGTCATCGGTCATCACCCTTTGTTAGGTCGGGTTACAAAAAATATTGCGAACCTCGATTGGAGCTCGCGATCCTGCTGCCATTTGCTCTGTTTTTTGAATGCATTGAGCC] [+] EMBL OS0955A [ TCTGTCTCATTTGTACGTCTTCAATATGCTGGAAAGAGTGAAGATGATCTGTTGAAAGAGGTAAATGATCCAAAGCAGTTTCTGGTCACCTCCTTGGCTACTCTTTCTGCGCAATCTCCAGGGAGATTTGGTCCTATCATTGAGCAGAACGTGGATCCTGCAAACAAAGGCGCTCTTATTCAACTTTGTGCAGCTTACAATACCAACATTGTCTAGGAGCCAATGGCTTTGCTGTAAGGCATTTGCATTGTTTCCATGGGGTTTTGTCAAAGGATGTCTCAGGGGAGTCTATCGGTCGGTCGGTCTAT ] consensusID : consensus_4513#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence [CTATCATTGAGCAGAACGTGGATCCTGCAAACAAAGGCGCTCTTATTCAACTTTGTGCAGCTTACAATACCAACATTGTCTAGGAGCCAATGGCTTTGCTGTAAGGCATTTGCATTGTTTCCATGGGGTTTTGTCAAAGGATGTCTCAGGGGAGTCTATCGGTCGGTCGGTCTATCGGGTCAAGCTGGTCTTCGGTTTCATCCTTGCAATATTTCTGGCATGTGTAGGTTGGTCTTGGGAGAGGAAGGATGTCGAAATCATATAGTGGTGGAAAAACATGAACATTGTGGTGGAGGATGTCTCTTTGATTGGAATTTGGAATTTTCTTTTTTGGTGTGGAAGAGGTTTGTTTCCCCCGGAAAACATGAACATTGTGGAGGATACCCCGAGAATATTGCCAGCGTAGGCATGTGCCATCCTGGTGGAACTTTGCTGTAAAAAAAAAAAAA] [+] EMBL C98176 [CTATCATTGAGCAGAACGTGGATCCTGCAAACAAAGGCGCTCTTATTCAACTTTGTGCAGCTTACAATACCAACATTGTCTAGGAGCCAATGGCTTTGCTGTAAGGCATTTGCATTGTTTCCATGGGGTTTTGTCAAAGGATGTCTCAGGGGAGTCTATCGGTCGGTCGGTCTATCGGGTCAAGCTGGTCTTCGGTTTCATCCTTGCAATATTTCTGGCATGTGTAGGTTGGTCTTGGGAGAGGAAGGATGTCGAAATCATATAGTGGTGGAAAAACATGAACATTGTGGTGGAGGATGTCTCTTTGATTGGAATTTGGAATTTTCTTTTTTGGTGTGGAAGAGGTTTGTTTCCCCCGGAAAACATGAACATTGTGGAGGATACCCCGAGAATATTGCCAGCGTAGGCATGTGCCATCCTGGTGGAACTTTGCTGTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4513#0 GTCAATTTGAGCCGACCACCTCTCTCGCAGAACTACATGCAGCTGTTTGGTGTCCTGCTC 60 consensus_4513#1 ------------------------------------------------------------ consensus_4513#0 AGTAATGCTACCTGGGACCGTCCACCGTGTGTCCCTGCCTTGGTTCGGTTGCTGAGAGCA 120 consensus_4513#1 ------------------------------------------------------------ consensus_4513#0 TTCCTTCGGAAAATTCCAAATGAGCTTAACCAAGAGGGCAGGCTACCGAATATCTTAGTG 180 consensus_4513#1 ------------------------------------------------------------ consensus_4513#0 ATATTCCGCAGTCTCCTTTCGCGGAGCAGTACTGAAGATTCTGCCTTCTACATGCTTAAC 240 consensus_4513#1 ------------------------------------------------------------ consensus_4513#0 ACACTTGTGGAAAATGTGAGTTTTGACATCATGAATCCTCACATAAATGAGATATGGAGT 300 consensus_4513#1 ------------------------------------------------------------ consensus_4513#0 GCTTTGTTTACTCGACTACAGACAAGGCAGGCAGTGAAGTTTGTGAATTCTCTTGTGGTC 360 consensus_4513#1 ------------------------------------------------------------ consensus_4513#0 TTCATGTCCTTGGTGGTGGTTAAATATGGACCAGGTGTTCTTGTCAGTTCTGTCGATGCA 420 consensus_4513#1 ------------------------------------------------------------ consensus_4513#0 ATTCAGCCAAATATTTTCATGACAATCCTTCAGCGCTTTTGGATTCCCAATCTTAAATTC 480 consensus_4513#1 ------------------------------------------------------------ consensus_4513#0 ATCAAAGGGACTGTTGAAGTTAAGCTGACATCAGTTGCATCAACGAAGTTGATCTGTGAA 540 consensus_4513#1 ------------------------------------------------------------ consensus_4513#0 TCTGCACTGCTGTTGGATGGTGCAGCAGCCCAAACTTGGGGCAAATTGCTTGACAGTATT 600 consensus_4513#1 ------------------------------------------------------------ consensus_4513#0 GTTGCATTGCTGTCCAGAACGGATCAAGATGGGGCACAACAAGATCAGAATGATGGTGCT 660 consensus_4513#1 ------------------------------------------------------------ consensus_4513#0 GATGCAGATAGTCAGAGGACATCAGGTTATTCTGTCTCATTTGTACGTCTTCAATATGCT 720 consensus_4513#1 ------------------------------------------------------------ consensus_4513#0 GGAAAGAGTGAAGATGATCTGTTGAAAGAGGTAAATGATCCAAAGCAGTTTCTGGTCACC 780 consensus_4513#1 ------------------------------------------------------------ consensus_4513#0 TCCTTGGCTACTCTTTCTGCGCAATCTCCAGGGAGATTTGGTCCTATCATTGAGCAGAAC 840 consensus_4513#1 -------------------------------------------CTATCATTGAGCAGAAC 17 ***************** consensus_4513#0 GTGGATCCTGCAAACAAAGGCGCTCTTATTCAACTTTGTGCAGCTTACAATACCAACATT 900 consensus_4513#1 GTGGATCCTGCAAACAAAGGCGCTCTTATTCAACTTTGTGCAGCTTACAATACCAACATT 77 ************************************************************ consensus_4513#0 GTCTAGGAGCCAATGGCTTTGCTGTAAGGCATTTGCATTGTTTCCATGGGGTTTTGTCAA 960 consensus_4513#1 GTCTAGGAGCCAATGGCTTTGCTGTAAGGCATTTGCATTGTTTCCATGGGGTTTTGTCAA 137 ************************************************************ consensus_4513#0 AGGATGTCTCAGGGGAGTCTATCGGTCGGTCGGTCTATCGGGTCAAGCTGGTCTTCGGTT 1020 consensus_4513#1 AGGATGTCTCAGGGGAGTCTATCGGTCGGTCGGTCTATCGGGTCAAGCTGGTCTTCGGTT 197 ************************************************************ consensus_4513#0 TCATCCTTGCAATATTTCTGGCATGTGTAGGTTGGTCTTGGGAGAGGAAGGATGTCGAAA 1080 consensus_4513#1 TCATCCTTGCAATATTTCTGGCATGTGTAGGTTGGTCTTGGGAGAGGAAGGATGTCGAAA 257 ************************************************************ consensus_4513#0 TCATATAGTGGTGGAAAAACATGAACATTGTGGTGGAGGATGTCTCTTTGATTGGAATTT 1140 consensus_4513#1 TCATATAGTGGTGGAAAAACATGAACATTGTGGTGGAGGATGTCTCTTTGATTGGAATTT 317 ************************************************************ consensus_4513#0 GGAATTTTCTTTTTTGGTGTGGAAGAGGTTTGTTTCCCCCGGAAAACATGAACATTGTGG 1200 consensus_4513#1 GGAATTTTCTTTTTTGGTGTGGAAGAGGTTTGTTTCCCCCGGAAAACATGAACATTGTGG 377 ************************************************************ consensus_4513#0 AGGATACCCCGAGAATATTGCCAGCGTAGGCATGTGCCATCCTGGTGGAACTTTGCTGTA 1260 consensus_4513#1 AGGATACCCCGAGAATATTGCCAGCGTAGGCATGTGCCATCCTGGTGGAACTTTGCTGTA 437 ************************************************************ consensus_4513#0 ATTTTTTTGCCCTTGTTGGCTGAATGCCTTGCTCTGGCGTAGGAAATGGTATATGGCGTG 1320 consensus_4513#1 AAAAAAAAAAAA------------------------------------------------ 449 * consensus_4513#0 GGAGTATATTGTCATCGGTCATCACCCTTTGTTAGGTCGGGTTACAAAAAATATTGCGAA 1380 consensus_4513#1 ------------------------------------------------------------ consensus_4513#0 CCTCGATTGGAGCTCGCGATCCTGCTGCCATTTGCTCTGTTTTTTGAATGCATTGAGCC 1439 consensus_4513#1 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||