These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4515#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 841 fasta sequence [TTTTCTCAACTCGATCCATCTCTCTCTCTCTCTCGATCTCTCCATTAATTTCTACGTAAGCATTCGTAGCTATGGAGGAGTGCAAGGGCGGTGGCATGTCGCCGTCCTCCTCCATGGATAGCAGCACCCACCCGGCGCTGTCCACGACGTCGTCGGCGGCGACGGCGAGGCGGGACCTCAGCACCGATCTCCGGCTAGGGCTTAGCCTCTCGACGTCGTCGTCGTCCTCCCTCCGGCGGCGCTCGCCGACGGCGAACGCTGTTCGTGAAGGTGTACATGGAGGGCGTCCCGATCGGCCGGAAGCTCGACCTGCTCTTGCTGGATGGGTATGACAGCCTCCTCATCAAGCTCTGCCACATGTTCAAGACGCCCATCACCTATGCTGATGTTATGGAGTGCCATCAACAAGTTCCTGGCCAGAAGGCTGCCCATGTCCTCACCTATGAAGACCAGGACGGGGACTGGATGATGGTTGGGGACGTCCCATGGGAACTCTTCCTGAGCAGCGTAAAGAAGCTCAGGATTGCAAGGATGGATAAATGCTAAAACAGTTGCATTTGAATTTCTCTTTGTTTCTTCTTTTTTTTTTCCCATTGGAGGGAGGGCCCTTATTATATGTAGGTTAGTTGAAAAAGATTTTTGCTGAAGCTGAGATTATACTTACTAGCAGTGTACATTATAGTAAAGAAGTGTAGCATTATCAGCTACCTACCGTATAGCAGAACTGATTATTATTTTTCCTCTACTTCTTTAACTGGTTTGTAAATATCATGTATTCGTTAAAGAGAGTAGAGAAGTTGATAACACAAAGGTTCCATTTTACCTCAGTGGAATCAAATTT] [+] EMBL AK103865 [TTTTCTCAACTCGATCCATCTCTCTCTCTCTCTCGATCTCTCCATTAATTTCTACGTAAGCATTCGTAGCTATGGAGGAGTGCAAGGGCGGTGGCATGTCGCCGTCCTCCTCCATGGATAGCAGCACCCACCCGGCGCTGTCCACGACGTCGTCGGCGGCGACGGCGAGGCGGGACCTCAGCACCGATCTCCGGCTAGGGCTTAGCCTCTCGACGTCGTCGTCGTCCTCCCTCCGGCGGCGCTCGCCGACGGCGAACGCTGTTCGTGAAGGTGTACATGGAGGGCGTCCCGATCGGCCGGAAGCTCGACCTGCTCTTGCTGGATGGGTATGACAGCCTCCTCATCAAGCTCTGCCACATGTTCAAGACGCCCATCACCTATGCTGATGTTATGGAGTGCCATCAACAAGTTCCTGGCCAGAAGGCTGCCCATGTCCTCACCTATGAAGACCAGGACGGGGACTGGATGATGGTTGGGGACGTCCCATGGGAACTCTTCCTGAGCAGCGTAAAGAAGCTCAGGATTGCAAGGATGGATAAATGCTAAAACAGTTGCATTTGAATTTCTCTTTGTTTCTTCTTTTTTTTTTCCCATTGGAGGGAGGGCCCTTATTATATGTAGGTTAGTTGAAAAAGATTTTTGCTGAAGCTGAGATTATACTTACTAGCAGTGTACATTATAGTAAAGAAGTGTAGCATTATCAGCTACCTACCGTATAGCAGAACTGATTATTATTTTTCCTCTACTTCTTTAACTGGTTTGTAAATATCATGTATTCGTTAAAGAGAGTAGAGAAGTTGATAACACAAAGGTTCCATTTTACCTCAGTGGAATCAAATTT] consensusID : consensus_4515#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [CCATCTCTCTCTCTCTCTCGATCTCTCCATTAATTTCTACGTAAGCATTCGTAGCTATGGAGGAGTGCAAGGGCGGTGGCATGTCGCCGTCCTCCTCCATGGATAGCAGCACCCACCCGGCGCTCGCCGACGGGAACGCTGTTCGTGAAGGTGTACATGGAGGGCGTCCCGATCGGCCGGAAGCTCGACCTGCTCTTGCTGGATGGGTATGACAGCCTCCTCATCAAGCTCTGCCANATGTTCAAGACGNCCATCACCTATGCTGATGTTATGGAGTGCCATCAACAAGTTCCTGGCCAGAAAGGCTTGCCCATGTCCTCAGGNGGTTNCAAAAAAAAANNGNNNNNNNNNNNNANANAAAGGGGGCCCCCGGGGGGCCCNTTTTTCCCTNGGGG] [+] EMBL OSC09161 [CCATCTCTCTCTCTCTCTCGATCTCTCCATTAATTTCTACGTAAGCATTCGTAGCTATGGAGGAGTGCAAGGGCGGTGGCATGTCGCCGTCCTCCTCCATGGATAGCAGCACCCACCCGGCGCTCGCCGACGGGAACGCTGTTCGTGAAGGTGTACATGGAGGGCGTCCCGATCGGCCGGAAGCTCGACCTGCTCTTGCTGGATGGGTATGACAGCCTCCTCATCAAGCTCTGCCANATGTTCAAGACGNCCATCACCTATGCTGATGTTATGGAGTGCCATCAACAAGTTCCTGGCCAGAAAGGCTTGCCCATGTCCTCAGGNGGTTNCAAAAAAAAANNGNNNNNNNNNNNNANANAAAGGGGGCCCCCGGGGGGCCCNTTTTTCCCTNGGGG] consensusID : consensus_4515#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [AGCTCAGGNTTGCAAGGATGGATAAATGCTAAANCAGTTGCATTTGAATTTCTCTTTGTTTCTTCTTTTTTTTTTCCCATTGGNGGGAGGGCCCTTATTATATGTAGGTTAGTTGAAAAAGATTTTTGCTGAAGCTGNGATTATACTTACTAGCAGTGTACATTNTAGTAAAGAAGTGTAGCATTATCAGCTNCCTACCGTATAGCAGAACTGATTATTATTTTTCCTCTACTTCTTTAACTGGTTTGTAAATATCATGTATTCGTTAAAGAGNGTNGNGNTGTTGNTNACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C98167 [AGCTCAGGNTTGCAAGGATGGATAAATGCTAAANCAGTTGCATTTGAATTTCTCTTTGTTTCTTCTTTTTTTTTTCCCATTGGNGGGAGGGCCCTTATTATATGTAGGTTAGTTGAAAAAGATTTTTGCTGAAGCTGNGATTATACTTACTAGCAGTGTACATTNTAGTAAAGAAGTGTAGCATTATCAGCTNCCTACCGTATAGCAGAACTGATTATTATTTTTCCTCTACTTCTTTAACTGGTTTGTAAATATCATGTATTCGTTAAAGAGNGTNGNGNTGTTGNTNACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4515#0 TTTTCTCAACTCGATCCATCTCTCTCTCTCTCTCGATCTCTCCATTAATTTCTACGTAAG 60 consensus_4515#2 ------------------------------------------------------------ consensus_4515#1 ------------------------------------------------------------ consensus_4515#0 CATTCGTAGCTATGGAGGAGTGCAAGGGCGGTGGCATGTCGCCGTCCTCCTCCATGGATA 120 consensus_4515#2 ------------------------------------------------------------ consensus_4515#1 ------------------------------------------------------------ consensus_4515#0 GCAGCACCCACCCGGCGCTGTCCACGACGTCGTCGGCGGCGACGGCGAGGCGGGACCTCA 180 consensus_4515#2 ------------------------------------------------------------ consensus_4515#1 ------------------------------------------------------------ consensus_4515#0 GCACCGATCTCCGGCTAGGGCTTAGCCTCTCGACGTCGTCGTCGTCCTCCCTCCGGCGGC 240 consensus_4515#2 ------------------------------------------------------------ consensus_4515#1 ------------------------------------------------------------ consensus_4515#0 GCTCGCCGACGGCGAACGCTGTTCGTGAAGGTGTACATGGAGGGCGTCCCGATCGGCCGG 300 consensus_4515#2 ------------------------------------------------------------ consensus_4515#1 ------------------------------------------------------------ consensus_4515#0 AAGCTCGACCTGCTCTTGCTGGATGGGTATGACAGCCTCCTCATCAAGCTCTGCCACATG 360 consensus_4515#2 ------------------------------------------------------------ consensus_4515#1 ------------------------------------------------------------ consensus_4515#0 TTCAAGACGCCCATCACCTATGCTGATGTTATGGAGTGCCATCAACAAGTTCCTGGCCAG 420 consensus_4515#2 ------------------------------------------------------------ consensus_4515#1 ------------------------------------------------------------ consensus_4515#0 AAGGCTGCCCATGTCCTCACCTATGAAGACCAGGACGGGGACTGGATGATGGTTGGGGAC 480 consensus_4515#2 ------------------------------------------------------------ consensus_4515#1 --------------------------------------------------------CCAT 4 consensus_4515#0 GTCCCATGGGAACTCTTCCTGAGCAGCGTAAAGAAGCTCAGGATT-GCAAGGATGGATAA 539 consensus_4515#2 ----------------------------------AGCTCAGGNTT-GCAAGGATGGATAA 25 consensus_4515#1 CTCTCTCTCTCTCTCGATCTCTCCATTAATTTCTACGTAAGCATTCGTAGCTATGGAGGA 64 * * ** ** * * ***** * consensus_4515#0 ATGCTAAAACAGTTGCATTT----GAATTTCTCTTTGTTTCTTCTTTTTTTTTTCCCATT 595 consensus_4515#2 ATGCTAAANCAGTTGCATTT----GAATTTCTCTTTGTTTCTTCTTTTTTTTTTCCCATT 81 consensus_4515#1 GTGCAAGGGCGGTGGCATGTCGCCGTCCTCCTCCATGGATAGCAGCACCCACCCGGCGCT 124 *** * * ** **** * * * *** ** * * * consensus_4515#0 GGAGGGAGGGCCCTTATTATATGTAGGTTAGTTGAAAAAGATTTTTGCTGAAGCTGAGAT 655 consensus_4515#2 GGNGGGAGGGCCCTTATTATATGTAGGTTAGTTGAAAAAGATTTTTGCTGAAGCTGNGAT 141 consensus_4515#1 CGCCGACGGGAACGCTGTTCGTGAAGGTGTACATGGAGGGCGTCCCGATCGGCCGGAAGC 184 * * *** * * ** **** * * * * * * * consensus_4515#0 TATACTTACTAGCAGTGTACATTATAGTAAAGAAGTGTAGCATTATCAGCTACCTACCGT 715 consensus_4515#2 TATACTTACTAGCAGTGTACATTNTAGTAAAGAAGTGTAGCATTATCAGCTNCCTACCGT 201 consensus_4515#1 TCGACCTGCTCTTGCTGGATG----GGTATGACAGCCT--CCTCATCAAGCTC-TGCCAN 237 * ** * ** ** * *** ** * * * **** * * ** consensus_4515#0 ATAGCAGAACTGATTATTATTTTTCCTCTACTTCTTTAACTGGTTTGTAAATATCATGTA 775 consensus_4515#2 ATAGCAGAACTGATTATTATTTTTCCTCTACTTCTTTAACTGGTTTGTAAATATCATGTA 261 consensus_4515#1 ATGTTCAAGACGNCCATCA-----CCTATGCTGATGTTA-TGGAGTGCCATCAACAAGTT 291 ** * * ** * *** * ** * * * *** ** * * ** ** consensus_4515#0 TTCG-TTAAAGAGAGTAGAGAAGTTGATAACACAAAGGTTCCATTTTACCTCAGTGGAAT 834 consensus_4515#2 TTCG-TTAAAGAGNGTNGNGNTGTTGNTNACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 320 consensus_4515#1 CCTGGCCAGAAAGGCTTGCCCATGTCCTCAGGNGGTTNCAAAAAAAAANNGNNNNNNNNN 351 * * * ** * * * * * * * consensus_4515#0 CAAATTT------------------------------------- 841 consensus_4515#2 AAAAAAAAAAA--------------------------------- 331 consensus_4515#1 NNNANANAAAGGGGGCCCCCGGGGGGCCCNTTTTTCCCTNGGGG 395 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||