cluster # 4517

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Oryza sativa
cluster # 4517 cluster # 4517 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4517#0 length = 556 sequences # 2

consensus_4517#1 length = 311 sequences # 1

consensusID : consensus_4517#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 556
fasta sequence

                              [GAAACACAATCTCCAATGTTTTCAGATACATTCAGTGAAGCTCGGCCTAATGGCTTCAGTATTAGTACGATGAGGAAGGAAAAATCAAAACACAATTTCCAACCTCTGGAAAGTGTAGAGGCAGCAGCAGTAAAATTTAAAACCAATAGGCATGGTGACAATATCATGAACGAGAGAGCAATTGATTTCGACATATCAAATTTGGGTGTAACCACCACCAAGAAAATGACAAAGAGAAGGTCATTGTCAAAGCGTAAAAAGCCTGCTAATGGACTCGGAGGAGCCACTGACGTGCCACCAGATGTATAAATCGTTCCGTTTATTGTCCTTCATGTATAGGGCTTTTTGGCAGAGTGGCAGCACCTAGTTAATGTGCAACAAATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAGCCATCAGCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCATGGTTTCTTGGTGCAAGAAAAACTTGGTAATGTATTGNCTGACTGGATCTCTTTTTTAGTCCAACTGGATTATGGTTCAGNTTTCA]

[+] EMBL CA767182             [GAAACACAATCTCCAATGTTTTCAGATACATTCAGTGAAGCTCGGCCTAATGGCTTCAGTATTAGTACGATGAGGAAGGAAAAATCAAAACACAATTTCCAACCTCTGGAAAGTGTAGAGGCAGCAGCAGTAAAATTTAAAACCAATAGGCATGGTGACAATATCATGAACGAGAGAGCAATTGATTTCGACATATCAAATTTGGGTGTAACCACCACCAAGAAAATGACAAAGAGAAGGTCATTGTCAAAGCGTAAAAAGCCTGCTAATGGACTCGGAGGAGCCACTGACGTGCCACCAGATGTATAAATCGTTCCGTTTATTGTCCTTCATGTATAGGGCTTTTTGGCAGAGTGGCAGCACCTAGTTAATGTGCAACAAATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAGCCATCAGCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCATGGTTTCTTGGTGCAAGAAAAACTTGGTAATGTATTGNCTGACTGGATCTCTTTTTTAGTCCAACTGGATTATGGTTCAGNTTTCA]
[+] EMBL CA764438             [GAAACACAATCTCCAATGTTTTCAGATACATTCAGTGAAGCTCGGCCTAATGGCTTCAGTATTAGTACGATGAGGAAGGAAAAATCAAAACACAATTTCCAACCTCTGGAAAGTGTAGAGGCAGCAGCAGTAAAATTTAAAACCAATAGGCATGGTGACAATATCATGAACGAGAGAGCAATTGATTTCGACATATCAAATTTGGGTGTAACCACCACCAAGAAAATGACAAAGAGAAGGTCATTGTCAAAGCGTAAAAAGCCTGCTAATGGACTCGGAGGAGCCACTGACGTGCCACCAGATGTATAAATTGTTCCGTTTATTGTCCTTCATGTATAGGGCTTTTTGGCAGAGTGGCAGCACCTAGTTAATGTGCAACAAATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAGCCATCAGCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCAT GTTTCTTGGTGCAAGAAAAACTTGGTAATGTATTGCCTGACTGGATCTCTTTTTTAGTCCAACTGGATT               ]




>consensus_4517#0
GAAACACAATCTCCAATGTTTTCAGATACATTCAGTGAAGCTCGGCCTAATGGCTTCAGT
ATTAGTACGATGAGGAAGGAAAAATCAAAACACAATTTCCAACCTCTGGAAAGTGTAGAG
GCAGCAGCAGTAAAATTTAAAACCAATAGGCATGGTGACAATATCATGAACGAGAGAGCA
ATTGATTTCGACATATCAAATTTGGGTGTAACCACCACCAAGAAAATGACAAAGAGAAGG
TCATTGTCAAAGCGTAAAAAGCCTGCTAATGGACTCGGAGGAGCCACTGACGTGCCACCA
GATGTATAAATCGTTCCGTTTATTGTCCTTCATGTATAGGGCTTTTTGGCAGAGTGGCAG
CACCTAGTTAATGTGCAACAAATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAG
CCATCAGCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCATGGTTTCTTG
GTGCAAGAAAAACTTGGTAATGTATTGNCTGACTGGATCTCTTTTTTAGTCCAACTGGAT
TATGGTTCAGNTTTCA

consensusID : consensus_4517#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 311
fasta sequence

                              [ATAGTACATGTAAAGCTTGGTTTCCCGATGAATACATGTGTTTGTGCACTCGCACCCCATCATTTGAAAAACNAGNCATATAACAANTTTTGATTGAAAAAANCAGAGTGGCAGCACCTAGTTAATGTGCAACATATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAGCCATCAGCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCATGTTCCTTGTTGCAAGAAAAACTTGGTAATGTATTGCCTGACTGGATCTCTTTTTTAGTCCAACTGGATTATGTTCAGTTTTCACAT]

[+] EMBL D42759               [ATAGTACATGTAAAGCTTGGTTTCCCGATGAATACATGTGTTTGTGCACTCGCACCCCATCATTTGAAAAACNAGNCATATAACAANTTTTGATTGAAAAAANCAGAGTGGCAGCACCTAGTTAATGTGCAACATATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAGCCATCAGCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCATGTTCCTTGTTGCAAGAAAAACTTGGTAATGTATTGCCTGACTGGATCTCTTTTTTAGTCCAACTGGATTATGTTCAGTTTTCACAT]




>consensus_4517#1
ATAGTACATGTAAAGCTTGGTTTCCCGATGAATACATGTGTTTGTGCACTCGCACCCCAT
CATTTGAAAAACNAGNCATATAACAANTTTTGATTGAAAAAANCAGAGTGGCAGCACCTA
GTTAATGTGCAACATATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAGCCATCA
GCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCATGTTCCTTGTTGCAAG
AAAAACTTGGTAATGTATTGCCTGACTGGATCTCTTTTTTAGTCCAACTGGATTATGTTC
AGTTTTCACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4517#0      GAAACACAATCTCCAATGTTTTCAGATACATTCAGTGAAGCTCGGCCTAATGGCTTCAGT 60
consensus_4517#1      ------------------------------------------------------------
                                                                                  

consensus_4517#0      ATTAGTACGATGAGGAAGGAAAAATCAAAACACAATTTCCAACCTCTGGAAAGTGTAGAG 120
consensus_4517#1      ------------------------------------------------------------
                                                                                  

consensus_4517#0      GCAGCAGCAGTAAAATTTAAAACCAATAGGCATGGTGACAATATCATGAACGAGAGAGCA 180
consensus_4517#1      ------------------------------------------------------------
                                                                                  

consensus_4517#0      ATTGATTTCGACATATCAAATTTGGGTGTAACCACCACCAAGAAAATGACAAAGAGAAGG 240
consensus_4517#1      --------------------------------------------------------ATAG 4
                                                                              *  *

consensus_4517#0      TCATTGTCAAAGCGTAAAAAGCCTGCTAATGGACTCGGAGGAGCCACTGACGTGCCACCA 300
consensus_4517#1      TACATGT-AAAGCTTGGTTTCCCGATGAATACATGTGTTTGTGC-ACTCGCACCCCATC- 61
                      *   *** ***** *      **    ***  *   *   * ** ***  *   *** * 

consensus_4517#0      GATGTATAAATCGTTCCGTTTATTGTCCTTCATGTATAGGGCTTTTTGGCAGAGTGGCAG 360
consensus_4517#1      -ATTTGAAAAACNAGNCATATAACAANTTTTGATTGAAAAA------ANCAGAGTGGCAG 114
                       ** *  *** *    * * **      **    *  *           ***********

consensus_4517#0      CACCTAGTTAATGTGCAACAAATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAG 420
consensus_4517#1      CACCTAGTTAATGTGCAACATATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAG 174
                      ******************** ***************************************

consensus_4517#0      CCATCAGCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCATGGTTTCTTG 480
consensus_4517#1      CCATCAGCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCATG-TTCCTTG 233
                      **************************************************** ** ****

consensus_4517#0      GTGCAAGAAAAACTTGGTAATGTATTGNCTGACTGGATCTCTTTTTTAGTCCAACTGGAT 540
consensus_4517#1      TTGCAAGAAAAACTTGGTAATGTATTGCCTGACTGGATCTCTTTTTTAGTCCAACTGGAT 293
                       ************************** ********************************

consensus_4517#0      TATGGTTCAGNTTTCA--- 556
consensus_4517#1      TATG-TTCAGTTTTCACAT 311
                      **** ***** *****