These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4517#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 556 fasta sequence [GAAACACAATCTCCAATGTTTTCAGATACATTCAGTGAAGCTCGGCCTAATGGCTTCAGTATTAGTACGATGAGGAAGGAAAAATCAAAACACAATTTCCAACCTCTGGAAAGTGTAGAGGCAGCAGCAGTAAAATTTAAAACCAATAGGCATGGTGACAATATCATGAACGAGAGAGCAATTGATTTCGACATATCAAATTTGGGTGTAACCACCACCAAGAAAATGACAAAGAGAAGGTCATTGTCAAAGCGTAAAAAGCCTGCTAATGGACTCGGAGGAGCCACTGACGTGCCACCAGATGTATAAATCGTTCCGTTTATTGTCCTTCATGTATAGGGCTTTTTGGCAGAGTGGCAGCACCTAGTTAATGTGCAACAAATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAGCCATCAGCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCATGGTTTCTTGGTGCAAGAAAAACTTGGTAATGTATTGNCTGACTGGATCTCTTTTTTAGTCCAACTGGATTATGGTTCAGNTTTCA] [+] EMBL CA767182 [GAAACACAATCTCCAATGTTTTCAGATACATTCAGTGAAGCTCGGCCTAATGGCTTCAGTATTAGTACGATGAGGAAGGAAAAATCAAAACACAATTTCCAACCTCTGGAAAGTGTAGAGGCAGCAGCAGTAAAATTTAAAACCAATAGGCATGGTGACAATATCATGAACGAGAGAGCAATTGATTTCGACATATCAAATTTGGGTGTAACCACCACCAAGAAAATGACAAAGAGAAGGTCATTGTCAAAGCGTAAAAAGCCTGCTAATGGACTCGGAGGAGCCACTGACGTGCCACCAGATGTATAAATCGTTCCGTTTATTGTCCTTCATGTATAGGGCTTTTTGGCAGAGTGGCAGCACCTAGTTAATGTGCAACAAATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAGCCATCAGCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCATGGTTTCTTGGTGCAAGAAAAACTTGGTAATGTATTGNCTGACTGGATCTCTTTTTTAGTCCAACTGGATTATGGTTCAGNTTTCA] [+] EMBL CA764438 [GAAACACAATCTCCAATGTTTTCAGATACATTCAGTGAAGCTCGGCCTAATGGCTTCAGTATTAGTACGATGAGGAAGGAAAAATCAAAACACAATTTCCAACCTCTGGAAAGTGTAGAGGCAGCAGCAGTAAAATTTAAAACCAATAGGCATGGTGACAATATCATGAACGAGAGAGCAATTGATTTCGACATATCAAATTTGGGTGTAACCACCACCAAGAAAATGACAAAGAGAAGGTCATTGTCAAAGCGTAAAAAGCCTGCTAATGGACTCGGAGGAGCCACTGACGTGCCACCAGATGTATAAATTGTTCCGTTTATTGTCCTTCATGTATAGGGCTTTTTGGCAGAGTGGCAGCACCTAGTTAATGTGCAACAAATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAGCCATCAGCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCAT GTTTCTTGGTGCAAGAAAAACTTGGTAATGTATTGCCTGACTGGATCTCTTTTTTAGTCCAACTGGATT ] consensusID : consensus_4517#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence [ATAGTACATGTAAAGCTTGGTTTCCCGATGAATACATGTGTTTGTGCACTCGCACCCCATCATTTGAAAAACNAGNCATATAACAANTTTTGATTGAAAAAANCAGAGTGGCAGCACCTAGTTAATGTGCAACATATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAGCCATCAGCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCATGTTCCTTGTTGCAAGAAAAACTTGGTAATGTATTGCCTGACTGGATCTCTTTTTTAGTCCAACTGGATTATGTTCAGTTTTCACAT] [+] EMBL D42759 [ATAGTACATGTAAAGCTTGGTTTCCCGATGAATACATGTGTTTGTGCACTCGCACCCCATCATTTGAAAAACNAGNCATATAACAANTTTTGATTGAAAAAANCAGAGTGGCAGCACCTAGTTAATGTGCAACATATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAGCCATCAGCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCATGTTCCTTGTTGCAAGAAAAACTTGGTAATGTATTGCCTGACTGGATCTCTTTTTTAGTCCAACTGGATTATGTTCAGTTTTCACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4517#0 GAAACACAATCTCCAATGTTTTCAGATACATTCAGTGAAGCTCGGCCTAATGGCTTCAGT 60 consensus_4517#1 ------------------------------------------------------------ consensus_4517#0 ATTAGTACGATGAGGAAGGAAAAATCAAAACACAATTTCCAACCTCTGGAAAGTGTAGAG 120 consensus_4517#1 ------------------------------------------------------------ consensus_4517#0 GCAGCAGCAGTAAAATTTAAAACCAATAGGCATGGTGACAATATCATGAACGAGAGAGCA 180 consensus_4517#1 ------------------------------------------------------------ consensus_4517#0 ATTGATTTCGACATATCAAATTTGGGTGTAACCACCACCAAGAAAATGACAAAGAGAAGG 240 consensus_4517#1 --------------------------------------------------------ATAG 4 * * consensus_4517#0 TCATTGTCAAAGCGTAAAAAGCCTGCTAATGGACTCGGAGGAGCCACTGACGTGCCACCA 300 consensus_4517#1 TACATGT-AAAGCTTGGTTTCCCGATGAATACATGTGTTTGTGC-ACTCGCACCCCATC- 61 * *** ***** * ** *** * * * ** *** * *** * consensus_4517#0 GATGTATAAATCGTTCCGTTTATTGTCCTTCATGTATAGGGCTTTTTGGCAGAGTGGCAG 360 consensus_4517#1 -ATTTGAAAAACNAGNCATATAACAANTTTTGATTGAAAAA------ANCAGAGTGGCAG 114 ** * *** * * * ** ** * * *********** consensus_4517#0 CACCTAGTTAATGTGCAACAAATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAG 420 consensus_4517#1 CACCTAGTTAATGTGCAACATATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAG 174 ******************** *************************************** consensus_4517#0 CCATCAGCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCATGGTTTCTTG 480 consensus_4517#1 CCATCAGCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCATG-TTCCTTG 233 **************************************************** ** **** consensus_4517#0 GTGCAAGAAAAACTTGGTAATGTATTGNCTGACTGGATCTCTTTTTTAGTCCAACTGGAT 540 consensus_4517#1 TTGCAAGAAAAACTTGGTAATGTATTGCCTGACTGGATCTCTTTTTTAGTCCAACTGGAT 293 ************************** ******************************** consensus_4517#0 TATGGTTCAGNTTTCA--- 556 consensus_4517#1 TATG-TTCAGTTTTCACAT 311 **** ***** ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||