These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4519#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 3288 fasta sequence [ATCTAGTTGGAGCAAACATAGCGATTGAAGCGCTCGGCCTTCGCCTCTAGGATGGCCAAATCGCGCTGGGAGAGGACACCTGGGGCAGCTAGCGTCTATATTAGGTAGCACACCACGGCGTCGCGGGTGCGTTGCAACGGCGGTCGTATGCTGAGCAACAAGAGGAGCACTTCCGTAGCTCCGCGGCCTTGGCGGCTGGTTTCGCAGGAGCGGCGCCACTTCCCTCTGCAGCCGCCGGAGTCAGAGAGATAGAGAGAGTTGTGCCATGGAGTCAGGAGACTTGGAGGGTGGGGTTTGATTTGGTTTGCTTCTAGAAGATTTCCTAAAGGGGAACGAACATGCATTTCATCATGGGCTTACATCCACCGCATGGACCCGCTGCTGCCCCATGGTTAACCTCGAGCTAGAGACAAGGAGCCTCCTTGTAGGGATGCAGCTCGGGGATAACTTGTAGTGGATGGCACTTGTCTCACTGATTTGGAAGGATGGGAAGCTCGGCGTCGAGGTGCGCCATTCTATAGGAGGTGGTGGGGAGGGTTTCGTGCTCCTAGCCTCACCTTCCTCTCGACCTCCGGCCTCTAGACCTTCCTTCCACGTCTTGGCAGCCCTCGTCTTGGCGGAGGATGGCTCTAAGGAGAGGACCGAGGAGACGAGTGAGCTCTCTCAGCCAAATTGGTGGGTTTCCCATCATCGGCCTTCGCCTCCTCCTGCGATCTCCCGCGCAGTCGAGCTTATGCTATTGTTGCTTCACCGCCGCTGCCTCCTCTTGTCACCCCACGCCACAGCGATGGTCTAGGAAGCGAGAAGGCCATGTGAGAAGCTCCTCGCTTGCCACCCACTGCTGGTCGCCACGCTTCCGCCTTCCCATCGATGAGCTGGCGAGCTCGACCTTGCCGGCCTCCACCGCTAATGTTTGTGCACACAGAAAAAGGAGAGAGGAGGTAGGGAAGGAAGAAATGATGGTATGTTTCACTAACACGTGCAGCTCACTGTAATTTTCTTTTTCTAATTGATGTGCCACGTAAACGCCACATCAGCTAAACCCAGGCTCCATGCTGCCCTGGGATCTCGTTGACACTCGTATTAGAACGTGAGGATACGTTGTACCAGGTTTTGAGATTAAGGGACCCGCTTGAAACTGACTCTAAGATGAGGGACATGAACTGAACTTCTTGTTCCTGGACTAATTAAAATCTGCTCGAGGGAGCCCATCATGGCCAGAAAACAATTAGCTCCTCGGCCCACGTGGGACACACGGCCCAAGTCGCGGGCGATACCTTCCCTCCCCCTTCCCGCCGCCGCTGTCCCTTGCTCCCACCTCCGCTCCTCGCCGCCGCCGCCGCGAGTAGTAGTGCGGGTCTCGCGCTGCCGCTTGGCTTGGCTCCCATGGACGCGGCGGCGCCGGAAGCGACGGGTGGCTTCTGCGGAGGCGGCGGCGGCCTCTCCACCGGCCGGAAGCTGGTGCCGTGGTCGAGCTGGGCGGAGTGGCGGCACGTGCGCGACGGCCTCTTCTCCGCCTCCCCCGCCGCCGCTCTTCGTAGGATCGCGGCGTGGAGGAGCAGAGGCACCCTCCCGGTCCCCGTCGATGTGACCGCGGCTTTCGTCGAGATACGGCTGCGGGATCCCTTCTTCCGGAGTGTAATGGCTGTGGATGATGCGCTGGAGTCGGAAGAGATGCTGTCGATGCTGTATAGTATGGCGATCATGAGGCTCGTAAATGGTTTTGTGGAGAACCCACATAAGAAAACTGGCTATTCAATATCTGAATTAGCTGAGGCTGTTGGAATACCACGAGTTCTTGTCGACATTCGTCATGAGAGTTCACATCGCACTCTTCCCTCTCTTCGGCTGCTACGATTGGCAGCCATTAAGGCATTTGATTGGTTGAAGTGTATTTACTGGGATTCCCAGACTAATGCTATTCCTGATGTTCAAGTTGAAGTAAGGTCAAAATTGCATGAGATCAATAACTTTATGAAGGGAAAAGATTCAATGAAAGCAAAGTCGGGTTCAAAAAGGAAACGTTCTGAGAAAATGATTTCGAGAAACATAAAATATGTACGCCGGCTTTACTACGCATGTCCTTCTGAGGTTGCCTTTGTTATATTGGACTTTTTCCAACGTGGTGCCCCAGAGTCCTCTGAAAATAGCGATGTGTTAGAAACTGATAAGGATGTAGATCAGTCATCTGATATTCACAGTGAAATATCAAATAATGATATGAGAACTATCATAACTAAATTATCAGAAAAGGAACCAAGGTTGCTGCTTGGCATACTGAAGTCAGTAATTGAAACAATTGAGACCATGGAAGACCTTGAAAACAAAGGTGAATACAATGCTAGCCTGCCAGCTAAAGTGGAACTTTTAAGTTCCCATGTTCTGTGGCTTGTGACAAAGTTAAAAG-AATTGAAGGATTCAGGTTGCATTGGAGTTGTCCATGAGATAGGAGTGCTCTCTTCAGACAGGAATGCAGTCCCACGTTTCTGTCTAGCAAAACTTCTGCGGAAGCTGTTGAGTTTGTCTATTATAGATGAAAGATGTATCATAGATGCAGCCCTAGTGCTGATTGAGATGGCCACCAACAATGTGCAGGAGAAACTGAGGAAGCTTCCTATGTTATCCCTGGGAAAGGTGGCTAGAGATTCTACCCTCCCAGAGCCCACCAAAGAAACGGAATCAGTTGAGGAAGCAACAGAGAAGCTGGAAATGTTCAAGTCGCGGTTGAAACAGAAGGATTTACGTTTGGCAGAAAATGACACCGGGGCTTCATTGAACACAATCATGCCAGAGAAACGTAACAGATGGTCTACAGCAAAGTCTTGGACCCCCTGTCCAATAGGAATGATACCTTGTTCATTTAGTTCAGTGGCTGTTCTTCCGACCCTTGACGTCGTAGATCATGAATCAAGAGATGAAATATTAGAG-CAACATGT-AAGTGTTGAGCCTGATGATCATACTGAGAGGATCGGCTATTATT-CTGACCCAGAGAAGCAATTGGATGCTGA-AAGAATTCCGGAATTATCAAGACCATCACCTGAAGAATGTGAGATTTCAGATATGCCAGAACTGGCATTTCCTCTGAAGGGTAGGTTGCTAGTTGGTGGGGTGTGGAAGATGGTGAGCGAAGAGGAGCTACTCTTTATCAAGTCAAAGATGAAAATTTTGTTGTAACAACAGCTAGTTCAGTTTTGTCATCTTAAATCAACAATTTCAGGCTGTAAAACGAACAAGGGTAGTACTGTGCTAGTTAAGAGAAAAATGTATCGTTTACCCCCCAAAAAAAAA] [+] EMBL AK066052 [ATCTAGTTGGAGCAAACATAGCGATTGAAGCGCTCGGCCTTCGCCTCTAGGATGGCCAAATCGCGCTGGGAGAGGACACCTGGGGCAGCTAGCGTCTATATTAGGTAGCACACCACGGCGTCGCGGGTGCGTTGCAACGGCGGTCGTATGCTGAGCAACAAGAGGAGCACTTCCGTAGCTCCGCGGCCTTGGCGGCTGGTTTCGCAGGAGCGGCGCCACTTCCCTCTGCAGCCGCCGGAGTCAGAGAGATAGAGAGAGTTGTGCCATGGAGTCAGGAGACTTGGAGGGTGGGGTTTGATTTGGTTTGCTTCTAGAAGATTTCCTAAAGGGGAACGAACATGCATTTCATCATGGGCTTACATCCACCGCATGGACCCGCTGCTGCCCCATGGTTAACCTCGAGCTAGAGACAAGGAGCCTCCTTGTAGGGATGCAGCTCGGGGATAACTTGTAGTGGATGGCACTTGTCTCACTGATTTGGAAGGATGGGAAGCTCGGCGTCGAGGTGCGCCATTCTATAGGAGGTGGTGGGGAGGGTTTCGTGCTCCTAGCCTCACCTTCCTCTCGACCTCCGGCCTCTAGACCTTCCTTCCACGTCTTGGCAGCCCTCGTCTTGGCGGAGGATGGCTCTAAGGAGAGGACCGAGGAGACGAGTGAGCTCTCTCAGCCAAATTGGTGGGTTTCCCATCATCGGCCTTCGCCTCCTCCTGCGATCTCCCGCGCAGTCGAGCTTATGCTATTGTTGCTTCACCGCCGCTGCCTCCTCTTGTCACCCCACGCCACAGCGATGGTCTAGGAAGCGAGAAGGCCATGTGAGAAGCTCCTCGCTTGCCACCCACTGCTGGTCGCCACGCTTCCGCCTTCCCATCGATGAGCTGGCGAGCTCGACCTTGCCGGCCTCCACCGCTAATGTTTGTGCACACAGAAAAAGGAGAGAGGAGGTAGGGAAGGAAGAAATGATGGTATGTTTCACTAACACGTGCAGCTCACTGTAATTTTCTTTTTCTAATTGATGTGCCACGTAAACGCCACATCAGCTAAACCCAGGCTCCATGCTGCCCTGGGATCTCGTTGACACTCGTATTAGAACGTGAGGATACGTTGTACCAGGTTTTGAGATTAAGGGACCCGCTTGAAACTGACTCTAAGATGAGGGACATGAACTGAACTTCTTGTTCCTGGACTAATTAAAATCTGCTCGAGGGAGCCCATCATGGCCAGAAAACAATTAGCTCCTCGGCCCACGTGGGACACACGGCCCAAGTCGCGGGCGATACCTTCCCTCCCCCTTCCCGCCGCCGCTGTCCCTTGCTCCCACCTCCGCTCCTCGCCGCCGCCGCCGCGAGTAGTAGTGCGGGTCTCGCGCTGCCGCTTGGCTTGGCTCCCATGGACGCGGCGGCGCCGGAAGCGACGGGTGGCTTCTGCGGAGGCGGCGGCGGCCTCTCCACCGGCCGGAAGCTGGTGCCGTGGTCGAGCTGGGCGGAGTGGCGGCACGTGCGCGACGGCCTCTTCTCCGCCTCCCCCGCCGCCGCTCTTCGTAGGATCGCGGCGTGGAGGAGCAGAGGCACCCTCCCGGTCCCCGTCGATGTGACCGCGGCTTTCGTCGAGATACGGCTGCGGGATCCCTTCTTCCGGAGTGTAATGGCTGTGGATGATGCGCTGGAGTCGGAAGAGATGCTGTCGATGCTGTATAGTATGGCGATCATGAGGCTCGTAAATGGTTTTGTGGAGAACCCACATAAGAAAACTGGCTATTCAATATCTGAATTAGCTGAGGCTGTTGGAATACCACGAGTTCTTGTCGACATTCGTCATGAGAGTTCACATCGCACTCTTCCCTCTCTTCGGCTGCTACGATTGGCAGCCATTAAGGCATTTGATTGGTTGAAGTGTATTTACTGGGATTCCCAGACTAATGCTATTCCTGATGTTCAAGTTGAAGTAAGGTCAAAATTGCATGAGATCAATAACTTTATGAAGGGAAAAGATTCAATGAAAGCAAAGTCGGGTTCAAAAAGGAAACGTTCTGAGAAAATGATTTCGAGAAACATAAAATATGTACGCCGGCTTTACTACGCATGTCCTTCTGAGGTTGCCTTTGTTATATTGGACTTTTTCCAACGTGGTGCCCCAGAGTCCTCTGAAAATAGCGATGTGTTAGAAACTGATAAGGATGTAGATCAGTCATCTGATATTCACAGTGAAATATCAAATAATGATATGAGAACTATCATAACTAAATTATCAGAAAAGGAACCAAGGTTGCTGCTTGGCATACTGAAGTCAGTAATTGAAACAATTGAGACCATGGAAGACCTTGAAAACAAAGGTGAATACAATGCTAGCCTGCCAGCTAAAGTGGAACTTTTAAGTTCCCATGTTCTGTGGCTTGTGACAAAGTTAAAAG AATTGAAGGATTCAGGTTGCATTGGAGTTGTCCATGAGATAGGAGTGCTCTCTTCAGACAGGAATGCAGTCCCACGTTTCTGTCTAGCAAAACTTCTGCGGAAGCTGTTGAGTTTGTCTATTATAGATGAAAGATGTATCATAGATGCAGCCCTAGTGCTGATTGAGATGGCCACCAACAATGTGCAGGAGAAACTGAGGAAGCTTCCTATGTTATCCCTGGGAAAGGTGGCTAGAGATTCTACCCTCCCAGAGCCCACCAAAGAAACGGAATCAGTTGAGGAAGCAACAGAGAAGCTGGAAATGTTCAAGTCGCGGTTGAAACAGAAGGATTTACGTTTGGCAGAAAATGACACCGGGGCTTCATTGAACACAATCATGCCAGAGAAACGTAACAGATGGTCTACAGCAAAGTCTTGGACCCCCTGTCCAATAGGAATGATACCTTGTTCATTTAGTTCAGTGGCTGTTCTTCCGACCCTTGACGTCGTAGATCATGAATCAAGAGATGAAATATTAGAG CAACATGT AAGTGTTGAGCCTGATGATCATACTGAGAGGATCGGCTATTATT CTGACCCAGAGAAGCAATTGGATGCTGA AAGAATTCCGGAATTATCAAGACCATCACCTGAAGAATGTGAGATTTCAGATATGCCAGAACTGGCATTTCCTCTGAAGGGTAGGTTGCTAGTTGGTGGGGTGTGGAAGATGGTGAGCGAAGAGGAGCTACTCTTTATCAAGTCAAAGATGAAAATTTTGTTGTAACAACAGCTAGTTCAGTTTTGTCATCTTAAATCAACAATTTCAGGCTGTAAAACGAACAAGGGTAGTACTGTGCTAGTTAAGAGAAAAATGTATCGTTTACCCCCC ] [+] EMBL AU032968 [ cgagGAAACTGATAAGGATGTAGATCAGTCATCTGATATTCACAGTGAAATATCAAATAATGATATGAGANCTATCATAACTAAATTATCAGAAAAGGAACCAAGGTTGCTGCTTGGCATACTGAAGTCAGTAATTGAAACANTTGAGACCATGGAAGACCTTGAAAACAAAGGTGAATACAATGCTAGCCTGCCAGCTAAAGTGGAACTTTTAAGTTCCCATGTTCTGTGGCTTGTGACAAAGTTAAAAGNATTTGAAGGATTCAGGTTGCATT ] [+] EMBL AU032969 [ TAGAGCCAACATGTAAAGTGTTGAGCCTGATGATCATACTGAGGGGATCGGCTANTATTACTGACCCAGAGAAGCAANTGGATGCTGANAAGAATTCCGGAATTATCAAGACCATCACCTGAAGAATGTGAGATTTCAGATATGCCAGNACTGGCATTTCCTCTGAAGGGTAGGTTGCTAGTTGGTGGGGTGTGGAAGATGGTGANCGAAGAGGAGCTACTCTTTATCAAGTCAAAGATGAAAATTTTGTTGTAACAACAGCTAGTTCAGTTTTGTCATCTTAAATCAACAATTTCAGGCTGTAAAACGNACAAGGGTAGTACTGTGCTAGTTAAGAGAAAAATGTATCGTTTACCCCCCAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||