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Oryza sativa
cluster # 4523 cluster # 4523       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4523#0 length = 1888 sequences # 3  

consensusID : consensus_4523#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1888
fasta sequence
                              [TTTTTATAGGATATANCGAACAATTTCTATTTANCATAGAATTATGTTTATATTATGTGTACAATAGGATTCGGAGACCTCAGGTGCTAAATAAATTTTATGATATAAATAGGATGAAATCTTTCTGGTATGCGCTTGAACGATGTGTGTATACCATGATGGGTGGTGCCATTTATACGATGTGCCCGTAACCGTAAGCTTTACAGTGGTCTAAAAGCGAAATAATTCCGAGCAATGCGTCTGCTACACAGACCTTAATATTTATAAGTGACTGCACTCGAATACCTGACATTTGGATAGCATCTACGAAGAACGGGATGTCAGATTGTGAGGTTTTTCCCGGTATGCCATTAAAAAAAGATGGTGTCTGCCTCTGTGCCACTAAAAAGTTCGAGCCTCCCTCTGTGACATCGTCGAATTTTATCGCGCCCTCCGCATCATTCCGTCCGTTTTTATCCTAACGGTGGATAACGGCTGCGCCAAATGACTTAATTGCCCTTAGGCCTCCTAGCACTCTCCTCTCTCCCTCAAATGCAGCAGCAGCAAAGAAGCGGGAGGGGAGTCGCCGGCGATGCCGCTGCGGTCGGCGAGGCGAAGGGTGACAACGGCGGCCGTGGTGCTGAGCCACCACATCTCTCGCATCCTCGCCGCGTCGGCCTTGTGCCGCCGCCACCGGTGGCCGGCGTTAGTGCGCGGCTGTGCCACCACAGACGACGACGGGGCGCTGCGACGACGGCGGCGGCGGCATCGCTGCTCGATGAAGATGTCGGCAACAACGCTGCGACGACGACGACGACAACGACCGGGCCGAGGCGACGGCGGCGCCGGTCGGCCCTACGCGGCGGAAGGAGGCCGGGGCGTCGAGGAGGATGGGGGAAGGACTACGCCCGCGTCGCCGCCGTCTCCGGCAACGCACAGCAGCACGGCAGCGTCTACTGGAAGCACGTCGCGGCGGCGGTGCTCGCCTCCCTCGACCTGGCCAGGACCTAGCGCCATAGCTCACCGCCACACTCGCCACGACGGAGTCGCCAGTGTGGATGGACAACAGCACGGCGGCACAGTGCTGGGAGGTGGAGGATGTCGCTCGTGAGCTCGTTCATGGCGTCGCTGCTGGTTGGCGGCTACGCCTACATCGACAAGACCGACGGCGCTTGGATGAACTTGAAGACGGACAGGGCGCTGCGACAACGACGAGCGCCGATTGGAGGGGTGGCCGGTGGGGTTGCCGGCGGCCCTGGGCGAGTCGGAGGCGGCGCCGGAGTCGAATCCGGCGACGGAGGCGGGGGCGACCGCGGAGGGAGGCGCGGTGGCGGCGTCTTGGACGGGGACGGCGACGACCCGTGCCCGCGGGCCACCTCCGCCGACGCGTCGGAGCCCTCGGAGGCCGATCCCGCCGCTACCGACGCGTCGGAGCCCTCGGAGGCCGATCCCGCCGCTACCGACGCGTCGGAGCCCTCGGAGGCCGATCCCGCCCCGCGGGCCACCTCCGCCGACGCGTCGGAGCCCTCGGAGGCCGATCCCGCCGCTACCGACGCGTCGGAGCCCTCGGAGGCCGATCCCGCCGCTACCGACGCGTCGGAGCCCTCGGAGGCCGATCCCGCCCCGCGGGCCACCTCCGCCGACGCGTCGGAGCCCTCGGAGGCCGATCCCGCCGCTACCGCCGCGTCGGCCTCCTCGGCGGGGCGCTTCGATGCCATGCGGTGCAGGGAGGGGAGGGGGAGCAGGTCGCCGCCGTCGTCGAACCTGCACCCAGCCGCCGCGCAGCACCAGTCGCCGGCCACGCCGCGCCACCGCCTGTCTGCCACGCGCCGCGCCGCTAAGCGCCGCCTTGGCTGTCCGCCGACGCCGCTTAGCCCACTCGCCGTCGGCGCCGCCTGGCTACCTCTCT]

[-] EMBL AU058134             [TTTTTATAGGATATANCGAACAATTTCTATTTANCATAGAATTATGTTTATATTATGTGTACAATAGGATTCGGAGACCTCAGGTGCTAAATAAATTTTATGATATAAATAGGATGAAATCTTTCTGGTATGCGCTTGAACGATGTGTGTATACCATGATGGGTGGTGCCATTTATACGATGTGCCCGTAACCGTAAGCTTTACAGTGGTCTAAAAGCGAAATAATTCCGAGCAATGCGTCTGCTACACAGACCTTAATATTTATAAGTGACTGCACTCGAATACCTGACATTTGGATAGCATCTACGAAGAACGGGATGTCAGATTGTGAGGTTTTTCCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL AK108008             [                                                                                                                                                                                                                                                                                                         TAGCATCTACGAAGAACGGGATGTCAGATTGTGAGGTTTTTCCCGGTATGCCATTAAAAAAAGATGGTGTCTGCCTCTGTGCCACTAAAAAGTTCGAGCCTCCCTCTGTGACATCGTCGAATTTTATCGCGCCCTCCGCATCATTCCGTCCGTTTTTATCCTAACGGTGGATAACGGCTGCGCCAAATGACTTAATTGCCCTTAGGCCTCCTAGCACTCTCCTCTCTCCCTCAAATGCAGCAGCAGCAAAGAAGCGGGAGGGGAGTCGCCGGCGATGCCGCTGCGGTCGGCGAGGCGAAGGGTGACAACGGCGGCCGTGGTGCTGAGCCACCACATCTCTCGCATCCTCGCCGCGTCGGCCTTGTGCCGCCGCCACCGGTGGCCGGCGTTAGTGCGCGGCTGTGCCACCACAGACGACGACGGGGCGCTGCGACGACGGCGGCGGCGGCATCGCTGCTCGATGAAGATGTCGGCAACAACGCTGCGACGACGACGACGACAACGACCGGGCCGAGGCGACGGCGGCGCCGGTCGGCCCTACGCGGCGGAAGGAGGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK109640             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TAATTGCCCTTAGGCCTCCTAGCACTCTCCTCTCTCCCTCAGATGCAGCAGCAGCAAAGAAGCGGGAGGGGAGTCGCCGGCGATGCCGCTGCGGTCGGCGAGGCGAAGGGTGACAACGGCGGCCGTGGTGCTGAGCCACCACATCTCTCGCATCCTCGCCGCGTCGGCCTTGTGCCGCCGCCACCGGTGGCCGGCGTTAGTGCGCGGCTGTGCCACCACAGACGACGACGGGGCGCTGCGACGACGGCGGCGGCGGCATCGCTGCTCGATGAAGATGTCGGCAACAACGCTGCGACGACGACGACGACAACGACCGGGCCGAGGCGACGGCGGCGCCGGTCGGCCCTACGCGGCGGAAGGAGGCCGGGGCGTCGAGGAGGATGGGGGAAGGACTACGCCCGCGTCGCCGCCGTCTCCGGCAACGCACAGCAGCACGGCAGCGTCTACTGGAAGCACGTCGCGGCGGCGGTGCTCGCCTCCCTCGACCTGGCCAGGACCTAGCGCCATAGCTCACCGCCACACTCGCCACGACGGAGTCGCCAGTGTGGATGGACAACAGCACGGCGGCACAGTGCTGGGAGGTGGAGGATGTCGCTCGTGAGCTCGTTCATGGCGTCGCTGCTGGTTGGCGGCTACGCCTACATCGACAAGACCGACGGCGCTTGGATGAACTTGAAGACGGACAGGGCGCTGCGACAACGACGAGCGCCGATTGGAGGGGTGGCCGGTGGGGTTGCCGGCGGCCCTGGGCGAGTCGGAGGCGGCGCCGGAGTCGAATCCGGCGACGGAGGCGGGGGCGACCGCGGAGGGAGGCGCGGTGGCGGCGTCTTGGACGGGGACGGCGACGACCCGTGCCCGCGGGCCACCTCCGCCGACGCGTCGGAGCCCTCGGAGGCCGATCCCGCCGCTACCGACGCGTCGGAGCCCTCGGAGGCCGATCCCGCCGCTACCGACGCGTCGGAGCCCTCGGAGGCCGATCCCGCCCCGCGGGCCACCTCCGCCGACGCGTCGGAGCCCTCGGAGGCCGATCCCGCCGCTACCGACGCGTCGGAGCCCTCGGAGGCCGATCCCGCCGCTACCGACGCGTCGGAGCCCTCGGAGGCCGATCCCGCCCCGCGGGCCACCTCCGCCGACGCGTCGGAGCCCTCGGAGGCCGATCCCGCCGCTACCGCCGCGTCGGCCTCCTCGGCGGGGCGCTTCGATGCCATGCGGTGCAGGGAGGGGAGGGGGAGCAGGTCGCCGCCGTCGTCGAACCTGCACCCAGCCGCCGCGCAGCACCAGTCGCCGGCCACGCCGCGCCACCGCCTGTCTGCCACGCGCCGCGCCGCTAAGCGCCGCCTTGGCTGTCCGCCGACGCCGCTTAGCCCACTCGCCGTCGGCGCCGCCTGGCTACCTCTCT]


>consensus_4523#0 TTTTTATAGGATATANCGAACAATTTCTATTTANCATAGAATTATGTTTATATTATGTGT ACAATAGGATTCGGAGACCTCAGGTGCTAAATAAATTTTATGATATAAATAGGATGAAAT CTTTCTGGTATGCGCTTGAACGATGTGTGTATACCATGATGGGTGGTGCCATTTATACGA TGTGCCCGTAACCGTAAGCTTTACAGTGGTCTAAAAGCGAAATAATTCCGAGCAATGCGT CTGCTACACAGACCTTAATATTTATAAGTGACTGCACTCGAATACCTGACATTTGGATAG CATCTACGAAGAACGGGATGTCAGATTGTGAGGTTTTTCCCGGTATGCCATTAAAAAAAG ATGGTGTCTGCCTCTGTGCCACTAAAAAGTTCGAGCCTCCCTCTGTGACATCGTCGAATT TTATCGCGCCCTCCGCATCATTCCGTCCGTTTTTATCCTAACGGTGGATAACGGCTGCGC CAAATGACTTAATTGCCCTTAGGCCTCCTAGCACTCTCCTCTCTCCCTCAAATGCAGCAG CAGCAAAGAAGCGGGAGGGGAGTCGCCGGCGATGCCGCTGCGGTCGGCGAGGCGAAGGGT GACAACGGCGGCCGTGGTGCTGAGCCACCACATCTCTCGCATCCTCGCCGCGTCGGCCTT GTGCCGCCGCCACCGGTGGCCGGCGTTAGTGCGCGGCTGTGCCACCACAGACGACGACGG GGCGCTGCGACGACGGCGGCGGCGGCATCGCTGCTCGATGAAGATGTCGGCAACAACGCT GCGACGACGACGACGACAACGACCGGGCCGAGGCGACGGCGGCGCCGGTCGGCCCTACGC GGCGGAAGGAGGCCGGGGCGTCGAGGAGGATGGGGGAAGGACTACGCCCGCGTCGCCGCC GTCTCCGGCAACGCACAGCAGCACGGCAGCGTCTACTGGAAGCACGTCGCGGCGGCGGTG CTCGCCTCCCTCGACCTGGCCAGGACCTAGCGCCATAGCTCACCGCCACACTCGCCACGA CGGAGTCGCCAGTGTGGATGGACAACAGCACGGCGGCACAGTGCTGGGAGGTGGAGGATG TCGCTCGTGAGCTCGTTCATGGCGTCGCTGCTGGTTGGCGGCTACGCCTACATCGACAAG ACCGACGGCGCTTGGATGAACTTGAAGACGGACAGGGCGCTGCGACAACGACGAGCGCCG ATTGGAGGGGTGGCCGGTGGGGTTGCCGGCGGCCCTGGGCGAGTCGGAGGCGGCGCCGGA GTCGAATCCGGCGACGGAGGCGGGGGCGACCGCGGAGGGAGGCGCGGTGGCGGCGTCTTG GACGGGGACGGCGACGACCCGTGCCCGCGGGCCACCTCCGCCGACGCGTCGGAGCCCTCG GAGGCCGATCCCGCCGCTACCGACGCGTCGGAGCCCTCGGAGGCCGATCCCGCCGCTACC GACGCGTCGGAGCCCTCGGAGGCCGATCCCGCCCCGCGGGCCACCTCCGCCGACGCGTCG GAGCCCTCGGAGGCCGATCCCGCCGCTACCGACGCGTCGGAGCCCTCGGAGGCCGATCCC GCCGCTACCGACGCGTCGGAGCCCTCGGAGGCCGATCCCGCCCCGCGGGCCACCTCCGCC GACGCGTCGGAGCCCTCGGAGGCCGATCCCGCCGCTACCGCCGCGTCGGCCTCCTCGGCG GGGCGCTTCGATGCCATGCGGTGCAGGGAGGGGAGGGGGAGCAGGTCGCCGCCGTCGTCG AACCTGCACCCAGCCGCCGCGCAGCACCAGTCGCCGGCCACGCCGCGCCACCGCCTGTCT GCCACGCGCCGCGCCGCTAAGCGCCGCCTTGGCTGTCCGCCGACGCCGCTTAGCCCACTC GCCGTCGGCGCCGCCTGGCTACCTCTCT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)