These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4524#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1950 fasta sequence [GTCGTGGGATGGCGGTGCGGCGGTCGGTGGTAGGGCGAAGGGGTTCGGGGTGGTGCGGTGCTGCGTGCAGGAGAAGAAGCCGCGGGTGAGGAAGACCAAGGAGGAGAGGCGGGAGATGGTCGAGTCCTTCGTCAACACTTACCGGGTTTCAAATGATGGGAAATTCCCTTCAGTCAATCTCACGCATAAGGAAGTCGGAGGGTCATATTACATAGTTCGTGAAATCGTGAGAGATATCATCCAAGAGAACAGGGTTCTGGGCCCTGGCGGCTTGAATGCCACGGCACTGAGTTTTGAAGACTGCCCTGATTCTGTGGAGTCACCTGTTACGCATGAACTGGGCCAAGACAGTGTCGAGATATTAGATATGTCTGATGACAACCAAGCTGGCATGGATACTGTGACAGACATGAGCACCCAGCAACTACTGGGGTCATCTAATCTATTGGATGCTGGTATTCTGAATGGTGCACTCCGAAATGGGAACATAGCAGATATGGCATGCTTAGAGACAAACAGCGAGAAACAAGATGAAGTTCCATGTGCGCAATCAGCAGAAATTGACCCCAGTAGTTCTGAAAAGCTACCTCCTTCCTTCTCTCATGCCCCTGATTCAGAAAGTGAATTTGAGATGGACAGTCGGGTGGTTGCTCATGAGACAACCAGCAGTCTCACTAATGGAGTTATTTCCTCAGGACCCAGTGCTGTTATTACAAATGAGTCGCTTTTACAAGATCATGATGACACAACTGATAATGCTGTTGATGAAGCTGTTCTTTGCTTACAGACTAATGGAAGTTCTCAAGCAAATGAGACCATTTTGCAGGAACATGAGACACGACCTGAAAGTGTCATGAGCAATGATGTTCAAACCATTGACAGTCAGTCCAATTCTAGAGTGGATACTTTCAACTCAAATACAAGTGAAGACACAACCAAGTCTATTGAAGTGTCTGAAGTACAGAGGTTGCATCCTGATGAGGAAGAAAAGGCAGAAAATCTTGTTTCTCATGCAGAACTGGATACAAAGGTGTTCTCACACGTTGAAGGCAAGAATGGCATGGTGGAGGAAGATAACAGTGAACTCAAGCAATCTATATCTATCATAACAATGGAAGAGCATGATAGCAAGCCTGAACATGGAGACAGCACCACAACTGCCATCAGCAGTGCATGTGTTACTACTTAATGATGTTAGCAACAGGCAACTGAGTGCATTATGGAAGTATTACTCAAGATACGTTTCTGTTGTCTAGTTGCCTATTTATTGATATTCTATTTGCTATATAATATTTATTGATCATATAACAATTTGTTACATAAACCGGTTCTTGTACCTTGTCGATCATGTCCTATTTTTCTGTTTGGTTATGAAAATTTTATTTCTCATGCGAATGTGGTTAACTATGCGAGATGTTAACAATTTAATAGTGATTCAATAAAGGACAGATCACACACTATAATGTTTTTAACATTGTTATTCTTTATGGTCCGCAGGAAAACTGGGAAGGTGCAGCCGAAGAAAGAGACCAACCTGTTTTGGCTAATCATTAGGGCATTTGTTGTTT-CCATGT-CCAAGATGTGGGCAAAATGAGAGGATGTG-CAAAAGACACTTTCATCTGGCACTG-CAG-CCTGGGATG-CCCTCTGCCTACTGG-CAAATGTGAAGCTCCATTTTGACGCGATGCATATACATATTTGTTTTCTGTGCCGCACGTTAGGTTGGTTGGTAGGCTTCAGGAGTTTATTTAGGTTCTAGCTTGTAGGAGTAGCATTTGGTGAACTTTCTCAGCCTTTTCAACTCTAAAATCTATTAGCTGTAATTGCACTATTTTTGTAGAAGGGGTGAGGTATGTGCTTCTCTTATATATGAAAGTATGAAACAGTAGTATCCACAGATTCTCCTCTGAATGAGGATTA-CCGGCCTGGTGGCCTTGCGTTCTGGTGAAAAAA] [+] EMBL AK069942 [GTCGTGGGATGGCGGTGCGGCGGTCGGTGGTAGGGCGAAGGGGTTCGGGGTGGTGCGGTGCTGCGTGCAGGAGAAGAAGCCGCGGGTGAGGAAGACCAAGGAGGAGAGGCGGGAGATGGTCGAGTCCTTCGTCAACACTTACCGGGTTTCAAATGATGGGAAATTCCCTTCAGTCAATCTCACGCATAAGGAAGTCGGAGGGTCATATTACATAGTTCGTGAAATCGTGAGAGATATCATCCAAGAGAACAGGGTTCTGGGCCCTGGCGGCTTGAATGCCACGGCACTGAGTTTTGAAGACTGCCCTGATTCTGTGGAGTCACCTGTTACGCATGAACTGGGCCAAGACAGTGTCGAGATATTAGATATGTCTGATGACAACCAAGCTGGCATGGATACTGTGACAGACATGAGCACCCAGCAACTACTGGGGTCATCTAATCTATTGGATGCTGGTATTCTGAATGGTGCACTCCGAAATGGGAACATAGCAGATATGGCATGCTTAGAGACAAACAGCGAGAAACAAGATGAAGTTCCATGTGCGCAATCAGCAGAAATTGACCCCAGTAGTTCTGAAAAGCTACCTCCTTCCTTCTCTCATGCCCCTGATTCAGAAAGTGAATTTGAGATGGACAGTCGGGTGGTTGCTCATGAGACAACCAGCAGTCTCACTAATGGAGTTATTTCCTCAGGACCCAGTGCTGTTATTACAAATGAGTCGCTTTTACAAGATCATGATGACACAACTGATAATGCTGTTGATGAAGCTGTTCTTTGCTTACAGACTAATGGAAGTTCTCAAGCAAATGAGACCATTTTGCAGGAACATGAGACACGACCTGAAAGTGTCATGAGCAATGATGTTCAAACCATTGACAGTCAGTCCAATTCTAGAGTGGATACTTTCAACTCAAATACAAGTGAAGACACAACCAAGTCTATTGAAGTGTCTGAAGTACAGAGGTTGCATCCTGATGAGGAAGAAAAGGCAGAAAATCTTGTTTCTCATGCAGAACTGGATACAAAGGTGTTCTCACACGTTGAAGGCAAGAATGGCATGGTGGAGGAAGATAACAGTGAACTCAAGCAATCTATATCTATCATAACAATGGAAGAGCATGATAGCAAGCCTGAACATGGAGACAGCACCACAACTGCCATCAGCAGTGCATGTGTTACTACTTAATGATGTTAGCAACAGGCAACTGAGTGCATTATGGAAGTATTACTCAAGATACGTTTCTGTTGTCTAGTTGCCTATTTATTGATATTCTATTTGCTATATAATATTTATTGATCATATAACAATTTGTTACATAAACCGGTTCTTGTACCTTGTCGATCATGTCCTATTTTTCTGTTTGGTTATGAAAATTTTATTTCTCATGCGAATGTGGTTAACTATGCGAGATGTTAACAATTTAATAGTGATTCAATAAAGGACAGATCACACACTATAATGTTTTTAACATTGTTATTCTTTATGGTCCGCAGGAAAACTGGGAAGGTGCAGCCGAAGAAAGAGACCAACCTGTTTTGGCTAATCATTAGGGCATTTGTTGTTT CCATGT CCAAGATGTGGGCAAAATGAGAGGATGTG CAAAAGACACTTTCATCTGGCACTG CAG CCTGGGATG CCCTCTGCCTACTGG CAAATGTGAAGCTCCATTTTGACGCGATGCATATACATATTTGTTTTCTGTGCCGCACGTTAGGTTGGTTGGTAGGCTTCAGGAGTTTATTTAGGTTCTAGCTTGTAGGAGTAGCATTTGGTGAACTTTCTCAGCCTTTTCAACTCTAAAATCTATTAGCTGTAATTGCACTATTTTTGTAGAAGGGGTGAGGTATGTGCTTCTCTTATATATGAAAGTATGAAACAGTAGTATCCACAGATTCTCCTCTGAATGAGGATTA CCGGCCTGGT ] [+] EMBL AU058038 [ AGCCGAAGAAAGAGACCAACCTGTTTTGGCTAATCATTAGGGCATTTGTTGTTTCCCATGTCCCAAGATGTGGGCAAAATGAGAGGATGTGCCAAAAGACACTTTCATCTGGCACTGNCAGCCCTGGGATGCCCCTCTGCCTACTGGCCAAATGTGAAGCTCCATTTTGACGCGATGCATATACATATTTGTTTTCTGTGCCGCACGTTAGGTTGGTTGGTAGGCTTCAGGAGTTTATTTAGGTTCTAGCTTGTAGGAGTAGCATTTGGTGAACTTTCTCAGCCTTTTCAACTCTAAAATCTATTAGCTGTAATTGCACTATTTTTGTAGAAGGGGTGAGGTATGTGCTTCTCTTATATATGAAAGTATGAAACAGTAGTATCCACAGATTCTCCTCTGAATGAGGATTATCCGGCCTGGTGGCCTTGCGTTCTGGTGAAAAAA] consensusID : consensus_4524#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 832 fasta sequence [GGGGCAAACAGTGAGGAACAAGATGAAGTTCCATGTGCGCAATCAGCAGAAATTGACCCCAGTAGTTCTGAAAAGCTACCTCCTTCCTTCTCTCATGCCCCTGATTCAGAAAGTGAATTTGAGATGGACAGTCGGGTGGTTGCTCATGAGACAATCAGCAGTCTCACTAATGGAGTTATTTCCTCAGGACCCAGTGCTGTTATTACAAATGAGTCGCTTTTACAAGATCATGATGACACAGCTGATAATGCTGTTGATGAAGCTGTTCTTTGCTTACAGACTAATGGAAGTTCTCAAGCAAATGAGACCATTTTGCAGGAACATGAGACACGACCTGAAAGTGTCATGAGCAATGATGTTCAAACCATTGACAGTCAATCCAATTCTAGAGTGGATACTTTCAACTCAAATACGAGTGAAGACACAACCAAGTCTATTGAAGTGTCTGAAGTACAGAGGTTGCATCCTGATGAGGAAGAAAAGGCAGAAAATCTTGTTTCTCATGCAGAACTGGATACAAAGGTGTTCTCACACGTTGAAGGCAAGAATGGCATGGTGGAGGAAGATAACAGTGAACTCAAGCAATCTATATCTATCATAACAATGGAAGAGCATGATAGCAAGCCTGAACATGGAGACAGCACCACAACTGCCATCAGCAGGAAAACTGGGGAAGGTGCAGCCGAAGAAAGAGACCAACCCTGNTTTGGCTAATCATTANGGCATTTGGNTGGTTTCATGTCCAAGATGTGGGGCAAATGAGNAGGATGTGCAAAAGACACTTTTCATCTGGCACTGCAGCCTGGGATGCCCTCTGNCTACTGGGCAAATG] [+] EMBL CA765073 [GGGGCAAACAGTGAGGAACAAGATGAAGTTCCATGTGCGCAATCAGCAGAAATTGACCCCAGTAGTTCTGAAAAGCTACCTCCTTCCTTCTCTCATGCCCCTGATTCAGAAAGTGAATTTGAGATGGACAGTCGGGTGGTTGCTCATGAGACAATCAGCAGTCTCACTAATGGAGTTATTTCCTCAGGACCCAGTGCTGTTATTACAAATGAGTCGCTTTTACAAGATCATGATGACACAGCTGATAATGCTGTTGATGAAGCTGTTCTTTGCTTACAGACTAATGGAAGTTCTCAAGCAAATGAGACCATTTTGCAGGAACATGAGACACGACCTGAAAGTGTCATGAGCAATGATGTTCAAACCATTGACAGTCAATCCAATTCTAGAGTGGATACTTTCAACTCAAATACGAGTGAAGACACAACCAAGTCTATTGAAGTGTCTGAAGTACAGAGGTTGCATCCTGATGAGGAAGAAAAGGCAGAAAATCTTGTTTCTCATGCAGAACTGGATACAAAGGTGTTCTCACACGTTGAAGGCAAGAATGGCATGGTGGAGGAAGATAACAGTGAACTCAAGCAATCTATATCTATCATAACAATGGAAGAGCATGATAGCAAGCCTGAACATGGAGACAGCACCACAACTGCCATCAGCAGGAAAACTGGGGAAGGTGCAGCCGAAGAAAGAGACCAACCCTGNTTTGGCTAATCATTANGGCATTTGGNTGGTTTCATGTCCAAGATGTGGGGCAAATGAGNAGGATGTGCAAAAGACACTTTTCATCTGGCACTGCAGCCTGGGATGCCCTCTGNCTACTGGGCAAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4524#0 GTCGTGGGATGGCGGTGCGGCGGTCGGTGGTAGGGCGAAGGGGTTCGGGGTGGTGCGGTG 60 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 CTGCGTGCAGGAGAAGAAGCCGCGGGTGAGGAAGACCAAGGAGGAGAGGCGGGAGATGGT 120 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 CGAGTCCTTCGTCAACACTTACCGGGTTTCAAATGATGGGAAATTCCCTTCAGTCAATCT 180 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 CACGCATAAGGAAGTCGGAGGGTCATATTACATAGTTCGTGAAATCGTGAGAGATATCAT 240 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 CCAAGAGAACAGGGTTCTGGGCCCTGGCGGCTTGAATGCCACGGCACTGAGTTTTGAAGA 300 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 CTGCCCTGATTCTGTGGAGTCACCTGTTACGCATGAACTGGGCCAAGACAGTGTCGAGAT 360 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 ATTAGATATGTCTGATGACAACCAAGCTGGCATGGATACTGTGACAGACATGAGCACCCA 420 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 GCAACTACTGGGGTCATCTAATCTATTGGATGCTGGTATTCTGAATGGTGCACTCCGAAA 480 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 TGGGAACATAGCAGATATGGCATGCTTAGAGACAAACAGCGAGAAACAAGATGAAGTTCC 540 consensus_4524#1 ----------------------------GGGGCAAACAGTGAGGAACAAGATGAAGTTCC 32 * * ******* *** **************** consensus_4524#0 ATGTGCGCAATCAGCAGAAATTGACCCCAGTAGTTCTGAAAAGCTACCTCCTTCCTTCTC 600 consensus_4524#1 ATGTGCGCAATCAGCAGAAATTGACCCCAGTAGTTCTGAAAAGCTACCTCCTTCCTTCTC 92 ************************************************************ consensus_4524#0 TCATGCCCCTGATTCAGAAAGTGAATTTGAGATGGACAGTCGGGTGGTTGCTCATGAGAC 660 consensus_4524#1 TCATGCCCCTGATTCAGAAAGTGAATTTGAGATGGACAGTCGGGTGGTTGCTCATGAGAC 152 ************************************************************ consensus_4524#0 AACCAGCAGTCTCACTAATGGAGTTATTTCCTCAGGACCCAGTGCTGTTATTACAAATGA 720 consensus_4524#1 AATCAGCAGTCTCACTAATGGAGTTATTTCCTCAGGACCCAGTGCTGTTATTACAAATGA 212 ** ********************************************************* consensus_4524#0 GTCGCTTTTACAAGATCATGATGACACAACTGATAATGCTGTTGATGAAGCTGTTCTTTG 780 consensus_4524#1 GTCGCTTTTACAAGATCATGATGACACAGCTGATAATGCTGTTGATGAAGCTGTTCTTTG 272 **************************** ******************************* consensus_4524#0 CTTACAGACTAATGGAAGTTCTCAAGCAAATGAGACCATTTTGCAGGAACATGAGACACG 840 consensus_4524#1 CTTACAGACTAATGGAAGTTCTCAAGCAAATGAGACCATTTTGCAGGAACATGAGACACG 332 ************************************************************ consensus_4524#0 ACCTGAAAGTGTCATGAGCAATGATGTTCAAACCATTGACAGTCAGTCCAATTCTAGAGT 900 consensus_4524#1 ACCTGAAAGTGTCATGAGCAATGATGTTCAAACCATTGACAGTCAATCCAATTCTAGAGT 392 ********************************************* ************** consensus_4524#0 GGATACTTTCAACTCAAATACAAGTGAAGACACAACCAAGTCTATTGAAGTGTCTGAAGT 960 consensus_4524#1 GGATACTTTCAACTCAAATACGAGTGAAGACACAACCAAGTCTATTGAAGTGTCTGAAGT 452 ********************* ************************************** consensus_4524#0 ACAGAGGTTGCATCCTGATGAGGAAGAAAAGGCAGAAAATCTTGTTTCTCATGCAGAACT 1020 consensus_4524#1 ACAGAGGTTGCATCCTGATGAGGAAGAAAAGGCAGAAAATCTTGTTTCTCATGCAGAACT 512 ************************************************************ consensus_4524#0 GGATACAAAGGTGTTCTCACACGTTGAAGGCAAGAATGGCATGGTGGAGGAAGATAACAG 1080 consensus_4524#1 GGATACAAAGGTGTTCTCACACGTTGAAGGCAAGAATGGCATGGTGGAGGAAGATAACAG 572 ************************************************************ consensus_4524#0 TGAACTCAAGCAATCTATATCTATCATAACAATGGAAGAGCATGATAGCAAGCCTGAACA 1140 consensus_4524#1 TGAACTCAAGCAATCTATATCTATCATAACAATGGAAGAGCATGATAGCAAGCCTGAACA 632 ************************************************************ consensus_4524#0 TGGAGACAGCACCACAACTGCCATCAGCAGTGCATGTGTTACTACTTAATG-ATGTTAGC 1199 consensus_4524#1 TGGAGACAGCACCACAACTGCCATCAGCAGGAAA------ACTGGGGAAGGTGCAGCCGA 686 ****************************** * *** ** * * consensus_4524#0 AACAGGCAACTGAGTGCATTATGGAAGTATTACTCAAGATACGTTTCTGTTGTCTAGTTG 1259 consensus_4524#1 AGAAAGAGACCAACCCTGNTTTGG--CTAATCATTANGGCATTTGGNTGGTTTCATGTCC 744 * * * ** * * *** ** * * * * * * ** * ** ** consensus_4524#0 CCTATTTATTGATATTCTATTTGCTATATAATATTTATTGATCATATAACAATTTGTTAC 1319 consensus_4524#1 AAGATGTGGGGCAAATGAGNAGGATGTGCAAAAGACACTTTTCATCTGGCA--CTGCAGC 802 ** * * * * * * * ** * * * **** * ** ** * consensus_4524#0 ATAAACCGGTTCTTGTACCTTGTCGATCATGTCCTATTTTTCTGTTTGGTTATGAAAATT 1379 consensus_4524#1 CTGGGATGCCCTCTGN---CTACTGGGCAAATG--------------------------- 832 * * ** * * ** * consensus_4524#0 TTATTTCTCATGCGAATGTGGTTAACTATGCGAGATGTTAACAATTTAATAGTGATTCAA 1439 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 TAAAGGACAGATCACACACTATAATGTTTTTAACATTGTTATTCTTTATGGTCCGCAGGA 1499 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 AAACTGGGAAGGTGCAGCCGAAGAAAGAGACCAACCTGTTTTGGCTAATCATTAGGGCAT 1559 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 TTGTTGTTTCCATGTCCAAGATGTGGGCAAAATGAGAGGATGTGCAAAAGACACTTTCAT 1619 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 CTGGCACTGCAGCCTGGGATGCCCTCTGCCTACTGGCAAATGTGAAGCTCCATTTTGACG 1679 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 CGATGCATATACATATTTGTTTTCTGTGCCGCACGTTAGGTTGGTTGGTAGGCTTCAGGA 1739 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 GTTTATTTAGGTTCTAGCTTGTAGGAGTAGCATTTGGTGAACTTTCTCAGCCTTTTCAAC 1799 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 TCTAAAATCTATTAGCTGTAATTGCACTATTTTTGTAGAAGGGGTGAGGTATGTGCTTCT 1859 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 CTTATATATGAAAGTATGAAACAGTAGTATCCACAGATTCTCCTCTGAATGAGGATTACC 1919 consensus_4524#1 ------------------------------------------------------------ consensus_4524#0 GGCCTGGTGGCCTTGCGTTCTGGTGAAAAAA 1950 consensus_4524#1 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||