These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4526#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 907 fasta sequence [GGCTCATCCAAAGCTATAGCTTAGCTCTGCACACCTGCAGCTCGTCGTCGGCGATGGGAGCGACCATGCAGCTCGTCGTCGGCCTCGCCGGCGTCGCCTCCTCATCCCCCCGCCTCGCGCCACACT-GCGCCGTGGCCACGGCCACCACCACCAGCAGCTGCAGCGTCAGGAAACAGAGCTGCAGCTGCTGCGGCGCCGCCCATCTGCCACGGCGGCTGCAGCACAAACAGCAGAGGAGGTGCGGGATTCGTGTCCGCGCCGTCGAGACGGACGCCGCCGCCGGCGGCGAGGCGAAGGCCGCACCGGAGGAGCCGCCGAGCGTCGACTTCGCGTTCGTCGCCCCGCGGCTGCTGCCGGACGGGACGCCGGACGTGCACTACCGGACGGCGTGCGGCGGGCAGAAGCTCCGCGACATCATGCTCGACAACTACATCGACCTCTACGGGCCTTACGATAAGCTTCTGCTCAACTGCGAGGGAGGTGGAGAGTGCGGGACCTGCATCGTCGAGGTAGTTGAAGGCGGTGAACTGCTTTCCCCCAAAACTGATGTTGAGAAGGAATTGCTGAAAAGGAAACCAAAGACATGGAGATTGGCGTGCCAGGCTACTGTCGGCAATCCAGATTCAACTGGACAGATGGTCATTCAGCAATTGCCGGAGTGGAAGATACATGAGTGGGACAAGTAGCTGAATTTTAACTAGCGCTGCTGTGTGGCGGCAATACAGTAGATTAATTTCACCGACCATGGAGAAAAAGAGAGAGAGCCTAGCACATGATCAGGAGAAGAAACATTGGAAGACGATTAATGCTGTACATCCAAACTCCATGTAAAATTGTATACGTCTCCTGTAGCTACCAAATGGTCAGCATGAGTGTAATCAGGGATTGAAATTCGCTAATCTCAGAC] [+] EMBL AK068191 [GGCTCATCCAAAGCTATAGCTTAGCTCTGCACACCTGCAGCTCGTCGTCGGCGATGGGAGCGACCATGCAGCTCGTCGTCGGCCTCGCCGGCGTCGCCTCCTCATCCCCCCGCCTCGCGCCACACT GCGCCGTGGCCACGGCCACCACCACCAGCAGCTGCAGCGTCAGGAAACAGAGCTGCAGCTGCTGCGGCGCCGCCCATCTGCCACGGCGGCTGCAGCACAAACAGCAGAGGAGGTGCGGGATTCGTGTCCGCGCCGTCGAGACGGACGCCGCCGCCGGCGGCGAGGCGAAGGCCGCACCGGAGGAGCCGCCGAGCGTCGACTTCGCGTTCGTCGCCCCGCGGCTGCTGCCGGACGGGACGCCGGACGTGCACTACCGGACGGCGTGCGGCGGGCAGAAGCTCCGCGACATCATGCTCGACAACTACATCGACCTCTACGGGCCTTACGATAAGCTTCTGCTCAACTGCGAGGGAGGTGGAGAGTGCGGGACCTGCATCGTCGAGGTAGTTGAAGGCGGTGAACTGCTTTCCCCCAAAACTGATGTTGAGAAGGAATTGCTGAAAAGGAAACCAAAGACATGGAGATTGGCGTGCCAGGCTACTGTCGGCAATCCAGATTCAACTGGACAGATGGTCATTCAGCAATTGCCGGAGTGGAAGATACATGAGTGGGACAAGTAGCTGAATTTTAACTAGCGCTGCTGTGTGGCGGCAATACAGTAGATTAATTTCACCGACCATGGAGAAAAAGAGAGAGAGCCTAGCACATGATCAGGAGAAGAAACATTGGAAGACGATTAATGCTGTACATCCAAACTCCATGTAAAATTGTATACGTCTCCTGTAGCTACCAAATGGTCAGCATGAGTGTAATCAGGGATTGAAATTCGCTAATCTCAGAC] [+] EMBL CF325354 [ TCATCCAAAGCTATAGCTTAGCTCTGCACACCTGCAGCTCGTCGTCGGCGATGGGAGCGACCATGCAGCTCGTCGTCGGCCTCGCCGGCGTCGCCTCCTCCTCCCCCCGCCTCGCGCCACACTGGCGCCGTGGCCACGGCCACCACCACCAGCAGCTGCAGCGTCAGGAAACAGAGCTGCAGCTGCTGCGGCGCCGCCCATCTGCCACGGCGGCTGCAGCACAAACAGCAGAGGAGGTGCGGGATTCGTGTCCGCGCCGTCGAGACGGACGCCGCCGCCGGCGGCGAGGCGAAGGCCGCACCGGAGGAGCCGCCGAGCGTCGACTTCGCGTTCGTCGCCCCGCGGCTGCTGCCGGACGGGACGCCGGACGTGCACTACCGGACGGCGTGCGGCGGGCAGAAGCTCCGCGACATCATGCTCGACAACTACATCGACCTCTACGGGCCTTACGATAAGCTTCTGCTCAACTGCGAGGGAGGTGGAAAGTGCGGGACCTGCATCGTCGAGGT ] consensusID : consensus_4526#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [TCCGCGCCGTCGAGACGGACGCCGCCGCCGGCGGCGAGGCGAAGGCCGCACCGGAGGAGCCGCCGAGCGTCGACTTCGCGTTCGTCGCCCCGCGGCTGCTGCCGGACGGGACGCCGGACGTGCACTACCGGACGGCGTGCGGCGGGCAGAAGCTCCGCGACATCATGCTCGACAACTACATCGACCTCTACGGGCCTTACGATAAGCTTCTGCTCAACTGCGAGGGAGGTGGAGAGTGCGGGACCTGCATCGTCGAGGTAGTTGAAGGCGGTGAACTGCTTTCCCCCAAAACTGATGTTGAGAAGGAATTGCTGAAAAGGAAACCAAAGACATGGAGATTGGCGTGCCAGGCTACTGTCGGCAATCCAGATTCAACTGGACAGATGGTCATTCAGCAATTGCCGGAGTGGAAGATACATGAGTGGGACAAGTAGCTGAATTTTAACTAGCGCTGCTGTGTGGCGGCAATACAGTAGATTAATTTCACCGACCATGGAGAAAAAGAGAGAGAGCCTAGCACATGATCAGGAGAAGAAACATTGGAAGACGATTAATGCTGTACATCCAAACTCCATGTAAAATTGTATACGTCTCCTGTAGCTACCAAATGGTCAGCATGAGTGTAATCAGGGATTGAAAAAAAAAAAAAAAAAAACTCGAGACT] [-] EMBL BF430535 [TCCGCGCCGTCGAGACGGACGCCGCCGCCGGCGGCGAGGCGAAGGCCGCACCGGAGGAGCCGCCGAGCGTCGACTTCGCGTTCGTCGCCCCGCGGCTGCTGCCGGACGGGACGCCGGACGTGCACTACCGGACGGCGTGCGGCGGGCAGAAGCTCCGCGACATCATGCTCGACAACTACATCGACCTCTACGGGCCTTACGATAAGCTTCTGCTCAACTGCGAGGGAGGTGGAGAGTGCGGGACCTGCATCGTCGAGGTAGTTGAAGGCGGTGAACTGCTTTCCCCCAAAACTGATGTTGAGAAGGAATTGCTGAAAAGGAAACCAAAGACATGGAGATTGGCGTGCCAGGCTACTGTCGGCAATCCAGATTCAACTGGACAGATGGTCATTCAGCAATTGCCGGAGTGGAAGATACATGAGTGGGACAAGTAGCTGAATTTTAACTAGCGCTGCTGTGTGGCGGCAATACAGTAGATTAATTTCACCGACCATGGAGAAAAAGAGAGAGAGCCTAGCACATGATCAGGAGAAGAAACATTGGAAGACGATTAATGCTGTACATCCAAACTCCATGTAAAATTGTATACGTCTCCTGTAGCTACCAAATGGTCAGCATGAGTGTAATCAGGGATTGAAAAAAAAAAAAAAAAAAACTCGAGACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4526#0 GGCTCATCCAAAGCTATAGCTTAGCTCTGCACACCTGCAGCTCGTCGTCGGCGATGGGAG 60 consensus_4526#1 ------------------------------------------------------------ consensus_4526#0 CGACCATGCAGCTCGTCGTCGGCCTCGCCGGCGTCGCCTCCTCATCCCCCCGCCTCGCGC 120 consensus_4526#1 ------------------------------------------------------------ consensus_4526#0 CACACTGCGCCGTGGCCACGGCCACCACCACCAGCAGCTGCAGCGTCAGGAAACAGAGCT 180 consensus_4526#1 ------------------------------------------------------------ consensus_4526#0 GCAGCTGCTGCGGCGCCGCCCATCTGCCACGGCGGCTGCAGCACAAACAGCAGAGGAGGT 240 consensus_4526#1 ------------------------------------------------------------ consensus_4526#0 GCGGGATTCGTGTCCGCGCCGTCGAGACGGACGCCGCCGCCGGCGGCGAGGCGAAGGCCG 300 consensus_4526#1 ------------TCCGCGCCGTCGAGACGGACGCCGCCGCCGGCGGCGAGGCGAAGGCCG 48 ************************************************ consensus_4526#0 CACCGGAGGAGCCGCCGAGCGTCGACTTCGCGTTCGTCGCCCCGCGGCTGCTGCCGGACG 360 consensus_4526#1 CACCGGAGGAGCCGCCGAGCGTCGACTTCGCGTTCGTCGCCCCGCGGCTGCTGCCGGACG 108 ************************************************************ consensus_4526#0 GGACGCCGGACGTGCACTACCGGACGGCGTGCGGCGGGCAGAAGCTCCGCGACATCATGC 420 consensus_4526#1 GGACGCCGGACGTGCACTACCGGACGGCGTGCGGCGGGCAGAAGCTCCGCGACATCATGC 168 ************************************************************ consensus_4526#0 TCGACAACTACATCGACCTCTACGGGCCTTACGATAAGCTTCTGCTCAACTGCGAGGGAG 480 consensus_4526#1 TCGACAACTACATCGACCTCTACGGGCCTTACGATAAGCTTCTGCTCAACTGCGAGGGAG 228 ************************************************************ consensus_4526#0 GTGGAGAGTGCGGGACCTGCATCGTCGAGGTAGTTGAAGGCGGTGAACTGCTTTCCCCCA 540 consensus_4526#1 GTGGAGAGTGCGGGACCTGCATCGTCGAGGTAGTTGAAGGCGGTGAACTGCTTTCCCCCA 288 ************************************************************ consensus_4526#0 AAACTGATGTTGAGAAGGAATTGCTGAAAAGGAAACCAAAGACATGGAGATTGGCGTGCC 600 consensus_4526#1 AAACTGATGTTGAGAAGGAATTGCTGAAAAGGAAACCAAAGACATGGAGATTGGCGTGCC 348 ************************************************************ consensus_4526#0 AGGCTACTGTCGGCAATCCAGATTCAACTGGACAGATGGTCATTCAGCAATTGCCGGAGT 660 consensus_4526#1 AGGCTACTGTCGGCAATCCAGATTCAACTGGACAGATGGTCATTCAGCAATTGCCGGAGT 408 ************************************************************ consensus_4526#0 GGAAGATACATGAGTGGGACAAGTAGCTGAATTTTAACTAGCGCTGCTGTGTGGCGGCAA 720 consensus_4526#1 GGAAGATACATGAGTGGGACAAGTAGCTGAATTTTAACTAGCGCTGCTGTGTGGCGGCAA 468 ************************************************************ consensus_4526#0 TACAGTAGATTAATTTCACCGACCATGGAGAAAAAGAGAGAGAGCCTAGCACATGATCAG 780 consensus_4526#1 TACAGTAGATTAATTTCACCGACCATGGAGAAAAAGAGAGAGAGCCTAGCACATGATCAG 528 ************************************************************ consensus_4526#0 GAGAAGAAACATTGGAAGACGATTAATGCTGTACATCCAAACTCCATGTAAAATTGTATA 840 consensus_4526#1 GAGAAGAAACATTGGAAGACGATTAATGCTGTACATCCAAACTCCATGTAAAATTGTATA 588 ************************************************************ consensus_4526#0 CGTCTCCTGTAGCTACCAAATGGTCAGCATGAGTGTAATCAGGGATTGAAATTCGCTAAT 900 consensus_4526#1 CGTCTCCTGTAGCTACCAAATGGTCAGCATGAGTGTAATCAGGGATTGAAAAAAAAAAAA 648 *************************************************** ** consensus_4526#0 CTCAGAC--------- 907 consensus_4526#1 AAAAAAACTCGAGACT 664 * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||