These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4527#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 484 fasta sequence [CAGCCAACTGCATCGATATCGATCGATCACTCGACCGACCATCTCACAAGCAAAGCAAAAGCTCGTGGCAACAATGGCGAAGTGGGCGGCGATCATGGCGGTGCTGCTGCTGGCGGCGGCGTGGGCGCCGGCGCCGGCGACGGCGCAGTGCAACGCCGGGCAGCTGGCGATCTGCGCGGGCGCGATCATCGGCGGGTCGACGCCGTCGGCGTCGTGCTGCTCCAACCTGCGCGCGCAGAGGGGGTGCTTCTGCCAGTACGCGCGCAACCCGGCGTACGCCTCCTACATCAACAGCGCCAACGCCCGCAAGACCCTCACCTCCTGCGGCATCGCCATCCCCCGCTGCTAGGCACGCTCGATCTCCCGCCGCCGCGCGCCGCCGCTCGCCGGCGCCGGCGCCGGCCATGGTGCGTGGCAAATATATATATATATATATATATATACTGTGTGTACGTGCGCTTGAATAAAGGACGTGAGTTAATTT] [+] EMBL AK063196 [CAGCCAACTGCATCGATATCGATCGATCACTCGACCGACCATCTCACAAGCAAAGCAAAAGCTCGTGGCAACAATGGCGAAGTGGGCGGCGATCATGGCGGTGCTGCTGCTGGCGGCGGCGTGGGCGCCGGCGCCGGCGACGGCGCAGTGCAACGCCGGGCAGCTGGCGATCTGCGCGGGCGCGATCATCGGCGGGTCGACGCCGTCGGCGTCGTGCTGCTCCAACCTGCGCGCGCAGAGGGGGTGCTTCTGCCAGTACGCGCGCAACCCGGCGTACGCCTCCTACATCAACAGCGCCAACGCCCGCAAGACCCTCACCTCCTGCGGCATCGCCATCCCCCGCTGCTAGGCACGCTCGATCTCCCGCCGCCGCGCGCCGCCGCTCGCCGGCGCCGGCGCCGGCCATGGTGCGTGGCAAATATATATATATATATATATATATACTGTGTGTACGTGCGCTTGAATAAAGGACGTGAGTTAATTT] [+] EMBL OS1321804 [ CTCGACCGACCATCTCACAAGCAAAGCAAAAGCTCGTGGCAACAATGGCGAAGTGGGCGGCGATCATGGCGGTGCTGCTGCTGGCGGCGGCGTGGGCG CGGCGTCGGCGACGNATGA TGCAACGTCGGGCAGCTGGCGATCTGCGCGGGCGCGATCATCGGCGGGTCGACGTCGTCGGGNTNG NCTGCTCCAACCTGCGCGCGCAGAGTGGGTGCTTCT ] consensusID : consensus_4527#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [TCGACCGACCATCTCCAAGCAAAGCAATGGCGAAGTGGGCGGCGATCACGGCGGCGTTGCTGCTGCTGGCGGCGGCGGCGTGGGCAGCACGGCAGCCGGCGACGGCGCAGTGCAACGCCGGGCACTGGCGATCTGCGCGGGCGCGATCATCAGCGGTCGGCCCGTCGGCGTCGTGCTGCTCCAACCTGCGCGCGCAGAGGGGGTGCTTCTGCCAGTACGCGCGCAACCCGGCGTACGCCTCCTACATCAACAGCCCCAACGCCCGCAAGACCCTCACCTCCTGCGGCATCGCCATCCCCCGCTGCTAGGCTCGCTCGATCTCCCGCCGCCGCGCGCCCCGCTCGCCGGCGCCGGCGCCGGCCATGGTGTGTGTACGTCGCGTGCGCTTTGAATAAAAAGGACGTGAGCTTTGAATTAAAAAA] [+] EMBL BI806617 [TCGACCGACCATCTCCAAGCAAAGCAATGGCGAAGTGGGCGGCGATCACGGCGGCGTTGCTGCTGCTGGCGGCGGCGGCGTGGGCAGCACGGCAGCCGGCGACGGCGCAGTGCAACGCCGGGCACTGGCGATCTGCGCGGGCGCGATCATCAGCGGTCGGCCCGTCGGCGTCGTGCTGCTCCAACCTGCGCGCGCAGAGGGGGTGCTTCTGCCAGTACGCGCGCAACCCGGCGTACGCCTCCTACATCAACAGCCCCAACGCCCGCAAGACCCTCACCTCCTGCGGCATCGCCATCCCCCGCTGCTAGGCTCGCTCGATCTCCCGCCGCCGCGCGCCCCGCTCGCCGGCGCCGGCGCCGGCCATGGTGTGTGTACGTCGCGTGCGCTTTGAATAAAAAGGACGTGAGCTTTGAATTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4527#0 CAGCCAACTGCATCGATATCGATCGATCACTCGACCGACCATCTCACAAGCAAAGCAAAA 60 consensus_4527#1 ------------------------------TCGACCGACCATCTC-CAAGCAAAGCAA-- 27 *************** ************ consensus_4527#0 GCTCGTGGCAACAATGGCGAAGTGGGCGGCGATCATGGCGGTGCTGCTGCTG------GC 114 consensus_4527#1 --------------TGGCGAAGTGGGCGGCGATCACGGCGGCGTTGCTGCTGCTGGCGGC 73 ********************* ***** * ******** ** consensus_4527#0 GGCGGCGTGGGCGCC--GGC-GCCGGCGACGGCGCAGTGCAACGCCGGGCAGCTGGCGAT 171 consensus_4527#1 GGCGGCGTGGGCAGCACGGCAGCCGGCGACGGCGCAGTGCAACGCCGGGCA-CTGGCGAT 132 ************ * *** ****************************** ******** consensus_4527#0 CTGCGCGGGCGCGATCATCGGCGGGTCGACGCCGTCGGCGTCGTGCTGCTCCAACCTGCG 231 consensus_4527#1 CTGCGCGGGCGCGATCATCAGCGG-TCGGC-CCGTCGGCGTCGTGCTGCTCCAACCTGCG 190 ******************* **** *** * ***************************** consensus_4527#0 CGCGCAGAGGGGGTGCTTCTGCCAGTACGCGCGCAACCCGGCGTACGCCTCCTACATCAA 291 consensus_4527#1 CGCGCAGAGGGGGTGCTTCTGCCAGTACGCGCGCAACCCGGCGTACGCCTCCTACATCAA 250 ************************************************************ consensus_4527#0 CAGCGCCAACGCCCGCAAGACCCTCACCTCCTGCGGCATCGCCATCCCCCGCTGCTAGGC 351 consensus_4527#1 CAGCCCCAACGCCCGCAAGACCCTCACCTCCTGCGGCATCGCCATCCCCCGCTGCTAGGC 310 **** ******************************************************* consensus_4527#0 ACGCTCGATCTCCCGCCGCCGCGCGCCGCCGCTCGCCGGCGCCGGCGCCGGCCATGGTGC 411 consensus_4527#1 TCGCTCGATCTCCCGCCGCCGCGCGCC-CCGCTCGCCGGCGCCGGCGCCGGCCATGGTGT 369 ************************** ******************************* consensus_4527#0 GTGGCAAATATATATATATATATATATATATACTGTGTGTACGTGCGCTTGAATAAAGGA 471 consensus_4527#1 GTGTACGTCGCGTGCGCTT---TGAATAAAAAGGACGTGAGCTTTGAATTAAAAAA---- 422 *** * * * *** * * *** * * ** ** ** consensus_4527#0 CGTGAGTTAATTT 484 consensus_4527#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||