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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4533#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1613 fasta sequence
[CGAAACAACACACCAAATTAACCCATTCCCTTTCCGGGCTCCGGCCGATCCCCTCTGCCGCCGGCGGCGGCTCAGTTTGATGGGGAAGCGAAAAACGGCCACCCGAGCGCAGACAGCGGACGCCCCTAGGCGGGCGAAGCGGCCTAGGAGCCTCGACGCTCAGCTCCGCTCCTGTTCCGGCGCCGGCGCCGTCGGCCAGGCCCAGATCCGCTCCCCCTTCGCGAAACGAAGGGGCGATCACCTGCTGGATTGCTGCTCCAAGCGGCCGCCGCCGTCTTGGGGGTCAAAGCGAGCGCGCTCGGCCGCTCCAAGCTGCCGCCCGCCGCCGCACGGCTCCTCCCCCGTTCCCGATCCTTCCTGGAGAGACTGGCGGAAGGGCCAGCCGGGTTGATCGCGGAGCGCTTGCTCGCCGCCGACGTGGCCGACTACGTCCGCTTCCGCGCCGTGTGCGGCCCGTGGCGCCGCTGCTGCGCCAGCCCGCGCGGCGGCGGCGGCCCGGTTGATGGCCGCTTCCTCCCCCGGCGGTGGATCATGATCGACAAGGCGTCGCCCGCCGCCGCCACCGCTTCCTCAACGTCGCCACCGGCGAGTGCATCCACACGGACCTGCCGGAGCTCGCGGAGCACGACCTGCTCATGGTGACCCCCGAGGGCCTCCTCCTGCTGTTCCGCAAGGACGCCCCCCACGGCGTCCGCCTGCTGAACCCGCTCACCCGCCACCTCACCGAGCTCCCGCCGTTCGCCACGGTCCTGACGCCGGAGCAGCGCAACGACCCCCACCAGGGACTGCGCGGGGAGGATTTCCGGGTCAGAGGCGTCGCCATTGCCGACTCCTCCTCCACCTCCACCTCCACCGTGGTAGCGTATCTCAAATCCCCCACGACACTCGCCGTCGCCAAGCCCGGCGACAAGCGTTGTACCAAGATAGACTTCGACCACAGGCTCATGCTCTACTCGACGGTGCCCTTCGCCGGCCGCATCTACCATGCCACCGCCATTGGTATCATGACACCGGAGACCACCACCAGCTCAGATCAGCCACCGCGCATGCTGACGGCGGTCGACACGACGATCGACCCGCCATTCTCCTTCTGCTCGATGAGCGACAGCCTTCACCTGGTGGACAATGGCGGGCGGGAGCTGATCCTGGTGTACCGAACCGTAAGCCACGACGAATTCAGGAGGGAGTACGCGGTGTACCGGATGGATTTGGACTCCCGGCTGCTGATTCCGGCGAGGAGCCTGAGCGGCCGCGCCGTGTTCATCGGATTGTCTCGGTCGGTGTCGATTTCTCCGAGCACATTTCCCTCCGTCACCGGTGATACGGTCTACCTGGGTTTCGACTGCGGCGAAAGAACGAAAATCAGCGGGTACCATGTTGGGGATGGAAGCATCGAACATTCCCAGTTGATCAAGCATGCGTCGTGGTTTAAGCCGTCTACTCTCGTGGACTGCCTCTCCTGGTGCATCAAGAGCAACGGCAAGCAACTTGGTTGAGTCCTGAGCTGACCACTTGATCACGACATCTCTATTCCCTTGAGACCCTCGATCCTTCAAATCCTGGCNTTTGAAACAGATGGAATTTTGTGTNTNAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK108612 [CGAAACAACACACCAAATTAACCCATTCCCTTTCCGGGCTCCGGCCGATCCCCTCTGCCGCCGGCGGCGGCTCAGTTTGATGGGGAAGCGAAAAACGGCCACCCGAGCGCAGACAGCGGACGCCCCTAGGCGGGCGAAGCGGCCTAGGAGCCTCGACGCTCAGCTCCGCTCCTGTTCCGGCGCCGGCGCCGTCGGCCAGGCCCAGATCCGCTCCCCCTTCGCGAAACGAAGGGGCGATCACCTGCTGGATTGCTGCTCCAAGCGGCCGCCGCCGTCTTGGGGGTCAAAGCGAGCGCGCTCGGCCGCTCCAAGCTGCCGCCCGCCGCCGCACGGCTCCTCCCCCGTTCCCGATCCTTCCTGGAGAGACTGGCGGAAGGGCCAGCCGGGTTGATCGCGGAGCGCTTGCTCGCCGCCGACGTGGCCGACTACGTCCGCTTCCGCGCCGTGTGCGGCCCGTGGCGCCGCTGCTGCGCCAGCCCGCGCGGCGGCGGCGGCCCGGTTGATGGCCGCTTCCTCCCCCGGCGGTGGATCATGATCGACAAGGCGTCGCCCGCCGCCGCCACCGCTTCCTCAACGTCGCCACCGGCGAGTGCATCCACACGGACCTGCCGGAGCTCGCGGAGCACGACCTGCTCATGGTGACCCCCGAGGGCCTCCTCCTGCTGTTCCGCAAGGACGCCCCCCACGGCGTCCGCCTGCTGAACCCGCTCACCCGCCACCTCACCGAGCTCCCGCCGTTCGCCACGGTCCTGACGCCGGAGCAGCGCAACGACCCCCACCAGGGACTGCGCGGGGAGGATTTCCGGGTCAGAGGCGTCGCCATTGCCGACTCCTCCTCCACCTCCACCTCCACCGTGGTAGCGTATCTCAAATCCCCCACGACACTCGCCGTCGCCAAGCCCGGCGACAAGCGTTGTACCAAGATAGACTTCGACCACAGGCTCATGCTCTACTCGACGGTGCCCTTCGCCGGCCGCATCTACCATGCCACCGCCATTGGTATCATGACACCGGAGACCACCACCAGCTCAGATCAGCCACCGCGCATGCTGACGGCGGTCGACACGACGATCGACCCGCCATTCTCCTTCTGCTCGATGAGCGACAGCCTTCACCTGGTGGACAATGGCGGGCGGGAGCTGATCCTGGTGTACCGAACCGTAAGCCACGACGAATTCAGGAGGGAGTACGCGGTGTACCGGATGGATTTGGACTCCCGGCTGCTGATTCCGGCGAGGAGCCTGAGCGGCCGCGCCGTGTTCATCGGATTGTCTCGGTCGGTGTCGATTTCTCCGAGCACATTTCCCTCCGTCACCGGTGATACGGTCTACCTGGGTTTCGACTGCGGCGAAAGAACGAAAATCAGCGGGTACCATGTTGGGGATGGAAGCATCGAACATTCCCAGTTGATCAAGCATGCGTCGTGGTTTAAGCCGTCTACTCTCGTGGACTGCCTCTCCTGGTGCATCAAGAGCAACGGCAAGCAACTTGGTTGAGTCCTGAGCTGACCACTTGATCACGACATCTCTATTCCCTTGAGACCCTCGATCCTTCAAATCCTGG ]
[+] EMBL AU033228 [ CGAGCACATTTCCCTCCGTCACCGGTGATACGGTCTACCTGGGTTTCGACTGCGGCGAAAGAACNAAAATCAGCGGGTACCATGTTGGGGATGGAAGCATCGAACATTCCCAGTTGATCAANCATGCGTCGTGGTTTAAGCCGTCTACTCTCGTGGACTGCCTCTCCTGGTGCATCAAGAGCAACGGCAAGCAACTTGGTTGAGTCCTGAGNTGACCACTTGATCACGACATCTCTATTCCCTTGAGACCCTCGATCCTTNAAATCCTGGCNTTTGAAACAGATGGAATTTTGTGTNTNAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_4533#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 758 fasta sequence
[TCGCTGTCGCCCGAAACAACACACCAAATTAACCCATTCCCCTTCCGGGCTCCGGCCGATCCCCTCTGCCGCCGCCGGCGGCTCAGTTTGATGGGGAAGCGAAAAACGGCCACCCGAGCGCAGACAGCGGACGCCCCTAGGCGGGCGAAGCGGCCTAGGAGCCTCGACGCTCAGCTCCGCTCCTGTTCCGGCGCCGGCGCCGTCGGCCAGGCCCAGATCCGCTCCCCCTTCGCGAAACGAAGGGGCGATCACCTGCTGGATTGCTGCTCCAAGCGGCCGCCGCCGTCTTGGGGGTCAAAGCGAGCGCCGCCCGCCGCCGCACGGCTCCTCCCCCGTTCCCGATCCTTCCTGGAGAGACTGGGGGAATCTGGCGGAAGGGCCAGCCGGGTTGATCGCGGAGCGCTTGCTCGCCGCCGACGTGGCCGACTACGTCCGCTTCCGCGCCGTGTGCGGCCCGTGGCGCCGCTGCTGCGCCAGCCCGCGCGGCGGCGGCGGCCCGGTTGATGGCCGCTTCCTCCCCCCGGGGGGGATCATGATCGACAAGGGCTCGTCCGCCGTCTGCGGCGTACGCCGGCACCGTTTTCTAAAACGTTGCCACCGGCGAGTGCATTCACACGGACCTTGCCGAGCTCGCGGAGGCCGACCCGGTTATGGTGACCCCCAAGGGCCTCTTCTTGTTGTCCCAAGGACGCCCCCCAAGGGGTCCGCTGGTAAACCCTTAACCCGCACTTATACAGATTCCGCCTTTCCACGGTCTT]
[+] EMBL CA758633 [TCGCTGTCGCCCGAAACAACACACCAAATTAACCCATTCCCCTTCCGGGCTCCGGCCGATCCCCTCTGCCGCCGCCGGCGGCTCAGTTTGATGGGGAAGCGAAAAACGGCCACCCGAGCGCAGACAGCGGACGCCCCTAGGCGGGCGAAGCGGCCTAGGAGCCTCGACGCTCAGCTCCGCTCCTGTTCCGGCGCCGGCGCCGTCGGCCAGGCCCAGATCCGCTCCCCCTTCGCGAAACGAAGGGGCGATCACCTGCTGGATTGCTGCTCCAAGCGGCCGCCGCCGTCTTGGGGGTCAAAGCGAGCGCCGCCCGCCGCCGCACGGCTCCTCCCCCGTTCCCGATCCTTCCTGGAGAGACTGGGGGAATCTGGCGGAAGGGCCAGCCGGGTTGATCGCGGAGCGCTTGCTCGCCGCCGACGTGGCCGACTACGTCCGCTTCCGCGCCGTGTGCGGCCCGTGGCGCCGCTGCTGCGCCAGCCCGCGCGGCGGCGGCGGCCCGGTTGATGGCCGCTTCCTCCCCCCGGGGGGGATCATGATCGACAAGGGCTCGTCCGCCGTCTGCGGCGTACGCCGGCACCGTTTTCTAAAACGTTGCCACCGGCGAGTGCATTCACACGGACCTTGCCGAGCTCGCGGAGGCCGACCCGGTTATGGTGACCCCCAAGGGCCTCTTCTTGTTGTCCCAAGGACGCCCCCCAAGGGGTCCGCTGGTAAACCCTTAACCCGCACTTATACAGATTCCGCCTTTCCACGGTCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4533#0 -----------CGAAACAACACACCAAATTAACCCATTCCCTTTCCGGGCTCCGGCCGAT 49
consensus_4533#1 TCGCTGTCGCCCGAAACAACACACCAAATTAACCCATTCCCCTTCCGGGCTCCGGCCGAT 60
****************************** ******************
consensus_4533#0 CCCCTCTGCCGCCGGCGGCGGCTCAGTTTGATGGGGAAGCGAAAAACGGCCACCCGAGCG 109
consensus_4533#1 CCCCTCTGCCGCCGCCGGCGGCTCAGTTTGATGGGGAAGCGAAAAACGGCCACCCGAGCG 120
************** *********************************************
consensus_4533#0 CAGACAGCGGACGCCCCTAGGCGGGCGAAGCGGCCTAGGAGCCTCGACGCTCAGCTCCGC 169
consensus_4533#1 CAGACAGCGGACGCCCCTAGGCGGGCGAAGCGGCCTAGGAGCCTCGACGCTCAGCTCCGC 180
************************************************************
consensus_4533#0 TCCTGTTCCGGCGCCGGCGCCGTCGGCCAGGCCCAGATCCGCTCCCCCTTCGCGAAACGA 229
consensus_4533#1 TCCTGTTCCGGCGCCGGCGCCGTCGGCCAGGCCCAGATCCGCTCCCCCTTCGCGAAACGA 240
************************************************************
consensus_4533#0 AGGGGCGATCACCTGCTGGATTGCTGCTCCAAGCGGCCGCCGCCGTCTTGGGGGTCAAAG 289
consensus_4533#1 AGGGGCGATCACCTGCTGGATTGCTGCTCCAAGCGGCCGCCGCCGTCTTGGGGGTCAAAG 300
************************************************************
consensus_4533#0 CGAGCGCGCTCGGCCGCTCCAAGCTGCCGCCCGCCGCCGCACGGCTCCTCCCCCGTTCCC 349
consensus_4533#1 CGAGCGC--------------------CGCCCGCCGCCGCACGGCTCCTCCCCCGTTCCC 340
******* *********************************
consensus_4533#0 GATCCTTCCTGGAGAGACTGG----------CGGAAGGGCCAGCCGGGTTGATCGCGGAG 399
consensus_4533#1 GATCCTTCCTGGAGAGACTGGGGGAATCTGGCGGAAGGGCCAGCCGGGTTGATCGCGGAG 400
********************* *****************************
consensus_4533#0 CGCTTGCTCGCCGCCGACGTGGCCGACTACGTCCGCTTCCGCGCCGTGTGCGGCCCGTGG 459
consensus_4533#1 CGCTTGCTCGCCGCCGACGTGGCCGACTACGTCCGCTTCCGCGCCGTGTGCGGCCCGTGG 460
************************************************************
consensus_4533#0 CGCCGCTGCTGCGCCAGCCCGCGCGGCGGCGGCGGCCCGGTTGATGGCCGCTTCCTCCCC 519
consensus_4533#1 CGCCGCTGCTGCGCCAGCCCGCGCGGCGGCGGCGGCCCGGTTGATGGCCGCTTCCTCCCC 520
************************************************************
consensus_4533#0 CGGCGGTGGATCATGATCGACAAGGCGTCGCCCGCCG-------------CCGCCACCGC 566
consensus_4533#1 CCGGGGGGGATCATGATCGACAAGGGCTCGTCCGCCGTCTGCGGCGTACGCCGGCACCGT 580
* * ** ****************** *** ****** *** *****
consensus_4533#0 TTCCTCAA-CGTCGCCACCGGCGAGTGCATCCACACGGACCTGCCGGAGCTCGCGGAGCA 625
consensus_4533#1 TTTCTAAAACGTTGCCACCGGCGAGTGCATTCACACGGACCTTGCCGAGCTCGCGGAGGC 640
** ** ** *** ***************** *********** * ************
consensus_4533#0 CGACCTGCTCATGGTGACCCCCGAGGGCCTCCTCCTGCTGTTCCGCAAGGACGCCCCCCA 685
consensus_4533#1 CGACCCGGTTATGGTGACCCCCAAGGGCCTCTTCTTGTTGTCCC--AAGGACGCCCCCCA 698
***** * * ************ ******** ** ** *** ** **************
consensus_4533#0 CGGCGTCCGCCTGCTGAACCCGCTCACCCGCCACCTCACCGAGCTCCCGCCGTTCGCCAC 745
consensus_4533#1 AGGGGTCCGC-TGGTAAACCC-TTAACCCGCA--CTTATACAGATTCCGCCTTTC--CAC 752
** ****** ** * ***** * ****** ** * ** * ***** *** ***
consensus_4533#0 GGTCCTGACGCCGGAGCAGCGCAACGACCCCCACCAGGGACTGCGCGGGGAGGATTTCCG 805
consensus_4533#1 GGTCTT------------------------------------------------------ 758
**** *
consensus_4533#0 GGTCAGAGGCGTCGCCATTGCCGACTCCTCCTCCACCTCCACCTCCACCGTGGTAGCGTA 865
consensus_4533#1 ------------------------------------------------------------
consensus_4533#0 TCTCAAATCCCCCACGACACTCGCCGTCGCCAAGCCCGGCGACAAGCGTTGTACCAAGAT 925
consensus_4533#1 ------------------------------------------------------------
consensus_4533#0 AGACTTCGACCACAGGCTCATGCTCTACTCGACGGTGCCCTTCGCCGGCCGCATCTACCA 985
consensus_4533#1 ------------------------------------------------------------
consensus_4533#0 TGCCACCGCCATTGGTATCATGACACCGGAGACCACCACCAGCTCAGATCAGCCACCGCG 1045
consensus_4533#1 ------------------------------------------------------------
consensus_4533#0 CATGCTGACGGCGGTCGACACGACGATCGACCCGCCATTCTCCTTCTGCTCGATGAGCGA 1105
consensus_4533#1 ------------------------------------------------------------
consensus_4533#0 CAGCCTTCACCTGGTGGACAATGGCGGGCGGGAGCTGATCCTGGTGTACCGAACCGTAAG 1165
consensus_4533#1 ------------------------------------------------------------
consensus_4533#0 CCACGACGAATTCAGGAGGGAGTACGCGGTGTACCGGATGGATTTGGACTCCCGGCTGCT 1225
consensus_4533#1 ------------------------------------------------------------
consensus_4533#0 GATTCCGGCGAGGAGCCTGAGCGGCCGCGCCGTGTTCATCGGATTGTCTCGGTCGGTGTC 1285
consensus_4533#1 ------------------------------------------------------------
consensus_4533#0 GATTTCTCCGAGCACATTTCCCTCCGTCACCGGTGATACGGTCTACCTGGGTTTCGACTG 1345
consensus_4533#1 ------------------------------------------------------------
consensus_4533#0 CGGCGAAAGAACGAAAATCAGCGGGTACCATGTTGGGGATGGAAGCATCGAACATTCCCA 1405
consensus_4533#1 ------------------------------------------------------------
consensus_4533#0 GTTGATCAAGCATGCGTCGTGGTTTAAGCCGTCTACTCTCGTGGACTGCCTCTCCTGGTG 1465
consensus_4533#1 ------------------------------------------------------------
consensus_4533#0 CATCAAGAGCAACGGCAAGCAACTTGGTTGAGTCCTGAGCTGACCACTTGATCACGACAT 1525
consensus_4533#1 ------------------------------------------------------------
consensus_4533#0 CTCTATTCCCTTGAGACCCTCGATCCTTCAAATCCTGGCNTTTGAAACAGATGGAATTTT 1585
consensus_4533#1 ------------------------------------------------------------
consensus_4533#0 GTGTNTNAAAAAAAAAAAAAAAAAAAAA 1613
consensus_4533#1 ----------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||