Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 454 cluster # 454       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_454#0 length = 1356 sequences # 2  

consensusID : consensus_454#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1356
fasta sequence
                              [GAATTGCCTAATTGCTTGCTCACTGAATATCCTATACTGACAACCTTGAAGGTCTCAAACAACAAACTTGGTGGCCCCATATTTGGTGGTACGAATCATTTGTCGATCAAACATGCATTATACCTTGATGGCAACAAATTTGAAGGAACACTGCCGCGATATCTAACAGCAGATTTCGATGCTCATGGAACATTGGATTTGCATGACAATAATTTATCAGGTAAACTCGATTTTTCACAATGGAACCTTTCCACTTTATGCACCTTGAGTCTTGCGGGCAATAGTCTAATCGGTGAAATCCATCCAAGCATTTGCAATTTGACAAGAATTATGCTTTTGGATCTATCTCATAACAACCTTTCAGGGGCTATACCAGACTGTATGACCGCATTAGAGCTTGATTTTTTTATCGTCTCTCATAATTCTTTGTCCGGACATATAGTACCTTTTTCTTTCTTCAATAGCTCTACTGTCATGGCTTTGGATCTCAGTCACAACCAATTCAACGGAAACATTGAATGGGTACAACATCTAGGTGAAAGTAAGTACCTTTCACTGGGCAGCAACAAGTTTGAAGGGCAGATATCTCCCAGCCTTTGTCAGCTCCAGTCTTTAAGGATACTTGATTTCTCACACAACAGTCTATCAGGGCCATTGCCATCATGTATTGGAAACCTCTCATTTGGACAAAATCCAGTTGGTATCCCTTTATGGTCGCTAATCTGTGAGAATCACTTTAGGTACCCAATTTTCGATTACATCGGATGCTATGAAGAAAGAGGCTTCAGCTTCCGTACTAAAGGCAACATTTACGTATACAAACACAATTTCATCAATTGGATGTCTGGCATCGACTTATCTGCAAACATGTTGTCTGGACAAATTCCCAGGGAGTTGGGAAATCTGGGACATATCAAGGCCCTCAATCTGTCCTACAATTTCTTTGCCGGACCAATCCCAGCAACCTTTGCAAGCATGAGTTCAGTTGAAAGCTTAGACCTATCCCACAACAAGCTGAGTGGAGCAATACCATGGCAGTTAACTCGTTTG-TCA-TCACTGTCCGTGTTCTCAGTGATGTACAACAACTTATCAGGATGTATACCAAACTCTGGTCAGTTCGGCTCATTTGATATGGATAGCTACCAAGGAAACAACCTCCTACACCCAGCGTCAGAAGGGAGCGAGTGTGCTCCCAGTTCAGGTCATTCGCTACCGGATGATGGAGATGGAAAGGGAAATGATCCAATCCTTTACGCGGTCACTGCTGCCTCGTTCGTAGTGACATTTTGGATTACTTTCGCATTCACAAGCTTCCGAATGTAGAGCTTCAGATTTTTTAATACTTACTTTGTCCTA]

[+] EMBL AK110734             [GAATTGCCTAATTGCTTGCTCACTGAATATCCTATACTGACAACCTTGAAGGTCTCAAACAACAAACTTGGTGGCCCCATATTTGGTGGTACGAATCATTTGTCGATCAAACATGCATTATACCTTGATGGCAACAAATTTGAAGGAACACTGCCGCGATATCTAACAGCAGATTTCGATGCTCATGGAACATTGGATTTGCATGACAATAATTTATCAGGTAAACTCGATTTTTCACAATGGAACCTTTCCACTTTATGCACCTTGAGTCTTGCGGGCAATAGTCTAATCGGTGAAATCCATCCAAGCATTTGCAATTTGACAAGAATTATGCTTTTGGATCTATCTCATAACAACCTTTCAGGGGCTATACCAGACTGTATGACCGCATTAGAGCTTGATTTTTTTATCGTCTCTCATAATTCTTTGTCCGGACATATAGTACCTTTTTCTTTCTTCAATAGCTCTACTGTCATGGCTTTGGATCTCAGTCACAACCAATTCAACGGAAACATTGAATGGGTACAACATCTAGGTGAAAGTAAGTACCTTTCACTGGGCAGCAACAAGTTTGAAGGGCAGATATCTCCCAGCCTTTGTCAGCTCCAGTCTTTAAGGATACTTGATTTCTCACACAACAGTCTATCAGGGCCATTGCCATCATGTATTGGAAACCTCTCATTTGGACAAAATCCAGTTGGTATCCCTTTATGGTCGCTAATCTGTGAGAATCACTTTAGGTACCCAATTTTCGATTACATCGGATGCTATGAAGAAAGAGGCTTCAGCTTCCGTACTAAAGGCAACATTTACGTATACAAACACAATTTCATCAATTGGATGTCTGGCATCGACTTATCTGCAAACATGTTGTCTGGACAAATTCCCAGGGAGTTGGGAAATCTGGGACATATCAAGGCCCTCAATCTGTCCTACAATTTCTTTGCCGGACCAATCCCAGCAACCTTTGCAAGCATGAGTTCAGTTGAAAGCTTAGACCTATCCCACAACAAGCTGAGTGGAGCAATACCATGGCAGTTAACTCGTTTG TCA TCACTGTCCGTGTTCTCAGTGATGTACAACAACTTATCAGGATGTATACCAAACTCTGGTCAGTTCGGCTCATTTGATATGGATAGCTACCAAGGAAACAACCTCCTACACCCAGCGTCAGAAGGGAGCGAGTGTGCTCCCAGTTCAGGTCATTCGCTACCGGATGATGGAGATGGAAAGGGAAATGATCCAATCCTTTACGCGGTCACTGCTGCCTCGTTCGTAGTGACATTTTGGATTACTTTCGCATTCACAAGCTTCCGAATGTAGAGCTTCAGATTTTTTAATACTTACTTTGTCCTA]
[+] EMBL AA754534             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  aggaaAGAA CACTTTAGGNGCCCCATTTTCGAANACATCGNTTGCTATGAAGAAAGAGGCTTCAGCTTCCGTACTAAAGGC CCNTTTACATANACAAACACAATTTCATCAATTGGATGTCTGGCATCGACTTATCTGCAAACATGTTGTCTGGACAAATTCCCAGGGAGTTGGGAAATCTGGGACATATCAAGGCCCTCAATCTGTCCTACAATTTCTTTGCCGGACCAATCCCAGCAACCTTTGCAAGCATGAGTTCAGTTGAAAGCTTAGACCTATCCCACAACAAGCTGAGTGGAGCAATACCATGGCAGTTAACTCGTTTGNTCATTCACTGTCCGTGTTCTCAGTGATGTACAACAACTTATCAGGATGTATACCAAACTCTGGTCAGTTCGGCTCATTTGATATGGATAGCTACCAAGGAAACAACCTCCTACACCCAGCGTCAGAAGGGAGCGAGTGTGCTCCCAGTTCAGGTCATTCGCTACCGGATGATGGAGATGGAAAGGGAAATGATCCAATCCTTTACGC GTCACTGCTGCCTCGTTCGTAGTGACATTTTGGATTACTTTCGCATTCACAAGCTTC                                          ]


>consensus_454#0 GAATTGCCTAATTGCTTGCTCACTGAATATCCTATACTGACAACCTTGAAGGTCTCAAAC AACAAACTTGGTGGCCCCATATTTGGTGGTACGAATCATTTGTCGATCAAACATGCATTA TACCTTGATGGCAACAAATTTGAAGGAACACTGCCGCGATATCTAACAGCAGATTTCGAT GCTCATGGAACATTGGATTTGCATGACAATAATTTATCAGGTAAACTCGATTTTTCACAA TGGAACCTTTCCACTTTATGCACCTTGAGTCTTGCGGGCAATAGTCTAATCGGTGAAATC CATCCAAGCATTTGCAATTTGACAAGAATTATGCTTTTGGATCTATCTCATAACAACCTT TCAGGGGCTATACCAGACTGTATGACCGCATTAGAGCTTGATTTTTTTATCGTCTCTCAT AATTCTTTGTCCGGACATATAGTACCTTTTTCTTTCTTCAATAGCTCTACTGTCATGGCT TTGGATCTCAGTCACAACCAATTCAACGGAAACATTGAATGGGTACAACATCTAGGTGAA AGTAAGTACCTTTCACTGGGCAGCAACAAGTTTGAAGGGCAGATATCTCCCAGCCTTTGT CAGCTCCAGTCTTTAAGGATACTTGATTTCTCACACAACAGTCTATCAGGGCCATTGCCA TCATGTATTGGAAACCTCTCATTTGGACAAAATCCAGTTGGTATCCCTTTATGGTCGCTA ATCTGTGAGAATCACTTTAGGTACCCAATTTTCGATTACATCGGATGCTATGAAGAAAGA GGCTTCAGCTTCCGTACTAAAGGCAACATTTACGTATACAAACACAATTTCATCAATTGG ATGTCTGGCATCGACTTATCTGCAAACATGTTGTCTGGACAAATTCCCAGGGAGTTGGGA AATCTGGGACATATCAAGGCCCTCAATCTGTCCTACAATTTCTTTGCCGGACCAATCCCA GCAACCTTTGCAAGCATGAGTTCAGTTGAAAGCTTAGACCTATCCCACAACAAGCTGAGT GGAGCAATACCATGGCAGTTAACTCGTTTGTCATCACTGTCCGTGTTCTCAGTGATGTAC AACAACTTATCAGGATGTATACCAAACTCTGGTCAGTTCGGCTCATTTGATATGGATAGC TACCAAGGAAACAACCTCCTACACCCAGCGTCAGAAGGGAGCGAGTGTGCTCCCAGTTCA GGTCATTCGCTACCGGATGATGGAGATGGAAAGGGAAATGATCCAATCCTTTACGCGGTC ACTGCTGCCTCGTTCGTAGTGACATTTTGGATTACTTTCGCATTCACAAGCTTCCGAATG TAGAGCTTCAGATTTTTTAATACTTACTTTGTCCTA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)