These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4546#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1526 fasta sequence [GTTAATGGAGGAGGCATTGGAGTAGTTGAGCTCGATCGATGAGGAAGAAGACTAGAAGAGGAGGAGGGACGGCGGTGGTGAGTGACAAGCGCCAACCGCGATTAATGGCGACGAGGACGTGCGCCGTAATGGCGGCAGTGACCGATCGGAGAGGCTCCAGGTTCTTGGCGGTTGAGGCTGGAGGCGTCGAGGCCAGCCGCGTCATCCACCCCCTTTAAATGCTTCCCGCCCCTTCGTTCTGCTCAATCACTCGCATCCATCCATCCATCGATCGATCGATCGGCGATGGTCGCCGCCGAGGAGAACCCGGAGTCCTTCTTCGCGGCGGCGCCGCCGCTGCGGGACGCCGACGCCGTGGCCGCGAGGCTGGGGGAATTCATCGCCCGCAACTCCTCCGCAGCGGGCGCGGGCGGCGGCGGCAGGCGGATCGTGTGCGTGACGTCGGGCGGGACGACGGTGCCGCTGGAGCAGCGCTGCGTGCGGTACATCGACAACTTCAGCTCCGGCCACCGCGGCGCCGCCTCCACCGAGTATTTTTTGAAGGCTGGCTATGCAGTTATCTTCCTCCATCGACGAGGAAGCTGCCAGCCTTATTGTAGGTTCCTCCCCGATGATTCATTCCTCAAATTCTTTGATGTCGATGCAGAATCGAAGGTTCAAGTGGCGGAGTGCCACGCGCCAGTGGTCAAGAAAGCAATTGGAGATTATTGCAAGGCAATTGAAGGCGGCTATCTGTTGAAACTCCCATTCACTACAATATTTGAATACCTTCAGCTATTGAAGATGGTTGCTACATCTATAAGTTCGGCTGGGCCACTCGGAATGTTCTATCTTGCTGCGGCTGTGTCTGATTTCTATGTCCCTTGGGATAGCATGGCCAAACATAAGATTCAGTCAGGTGGAGGCCCTCTGGATATGAGGCTCAGTCAAGTTCCGAAAATGCTTTCAGTGTTGCGAAACCAATGGGCCCCCTTGGCGTTCTGTATATCATTTAAGTTGGAGACGGATTCGGACATCCTTATTCAGAAAGCAGATATGGCTCTGAACAAGTACAAGATGAACATCGTTGTGGCCAATTTGCTTGCAACGTACAAAGAGGAAGTCATTATTGTAACAGACAAAGAAAGGAGTACTATCCGAAAGATGAACAAGGATGAGGATCTGGAAATGCAGATAATCAAAATCCTATCACAGAATCACTCGAAGTACATATGCGGAAGCACAAACGGGTGCGTCCAGAGCCCATATTGAATTGCGGGAATCTGTACTGTACCGTTTCACATTAGAGGTTTTACTTAAATTACTCTACTAAAGAGTTTGATTTGCTTTCTGGGCGTTGAAATGAAAAGAAAGCCCAACTGAATCTGGAATGAGAATTCAGTATACGGTGTAATCCGTGATGATGCCGATAGGTACACAAACAGCATCACTTTTTTTTCTCTCTTTCAGAATTACAAAAAAGAGAGTGAAGTTAACAGCGACAGCCCCAAATATAAATGGCTTATTTTATTTTAATCAAAATTAAT] [+] EMBL AK069567 [GTTAATGGAGGAGGCATTGGAGTAGTTGAGCTCGATCGATGAGGAAGAAGACTAGAAGAGGAGGAGGGACGGCGGTGGTGAGTGACAAGCGCCAACCGCGATTAATGGCGACGAGGACGTGCGCCGTAATGGCGGCAGTGACCGATCGGAGAGGCTCCAGGTTCTTGGCGGTTGAGGCTGGAGGCGTCGAGGCCAGCCGCGTCATCCACCCCCTTTAAATGCTTCCCGCCCCTTCGTTCTGCTCAATCACTCGCATCCATCCATCCATCGATCGATCGATCGGCGATGGTCGCCGCCGAGGAGAACCCGGAGTCCTTCTTCGCGGCGGCGCCGCCGCTGCGGGACGCCGACGCCGTGGCCGCGAGGCTGGGGGAATTCATCGCCCGCAACTCCTCCGCAGCGGGCGCGGGCGGCGGCGGCAGGCGGATCGTGTGCGTGACGTCGGGCGGGACGACGGTGCCGCTGGAGCAGCGCTGCGTGCGGTACATCGACAACTTCAGCTCCGGCCACCGCGGCGCCGCCTCCACCGAGTATTTTTTGAAGGCTGGCTATGCAGTTATCTTCCTCCATCGACGAGGAAGCTGCCAGCCTTATTGTAGGTTCCTCCCCGATGATTCATTCCTCAAATTCTTTGATGTCGATGCAGAATCGAAGGTTCAAGTGGCGGAGTGCCACGCGCCAGTGGTCAAGAAAGCAATTGGAGATTATTGCAAGGCAATTGAAGGCGGCTATCTGTTGAAACTCCCATTCACTACAATATTTGAATACCTTCAGCTATTGAAGATGGTTGCTACATCTATAAGTTCGGCTGGGCCACTCGGAATGTTCTATCTTGCTGCGGCTGTGTCTGATTTCTATGTCCCTTGGGATAGCATGGCCAAACATAAGATTCAGTCAGGTGGAGGCCCTCTGGATATGAGGCTCAGTCAAGTTCCGAAAATGCTTTCAGTGTTGCGAAACCAATGGGCCCCCTTGGCGTTCTGTATATCATTTAAGTTGGAGACGGATTCGGACATCCTTATTCAGAAAGCAGATATGGCTCTGAACAAGTACAAGATGAACATCGTTGTGGCCAATTTGCTTGCAACGTACAAAGAGGAAGTCATTATTGTAACAGACAAAGAAAGGAGTACTATCCGAAAGATGAACAAGGATGAGGATCTGGAAATGCAGATAATCAAAATCCTATCACAGAATCACTCGAAGTACATATGCGGAAGCACAAACGGGTGCGTCCAGAGCCCATATTGAATTGCGGGAATCTGTACTGTACCGTTTCACATTAGAGGTTTTACTTAAATTACTCTACTAAAGAGTTTGATTTGCTTTCTGGGCGTTGAAATGAAAAGAAAGCCCAACTGAATCTGGAATGAGAATTCAGTATACGGTGTAATCCGTGATGATGCCGATAGGTACACAAACAGCATCACTTTTTTTTCTCTCTTTCAGAATTACAAAAAAGAGAGTGAAGTTAACAGCGACAGCCCCAAATATAAATGGCTTATTTTATTTTAATCAAAATTAAT] [+] EMBL CA764506 [ aaggggCAGGTGGAGGCCCTCTGGATATGAGGCTCAGTCAAGTTCCGAAAATGCTTTCAGTGTTGCGAAACCAATGGGCCCCCTTGGCGTTCTGTATATCATTTAAGTCGGAGACGGATTCGGACATCCTTATTCAGAAAGCAGATATGGCTCTGAACAAGTACAAGATGAACATCGTTGTGGCCAATTTGCTTGCAACGTACAAAGAGGAAGTCATTATTGTAACAGACAAAGAAAGGAGTACTATCCGAAAGATGAACAAGGATGAGGATCTGGAAATGCAGATAATCAAAATCCTATCACACAATCACTCGAAGTACATATGCGGAAGCACAAACGGGTGCGTCCAGAGCCCATATTGAATTGCGGGAATCTGTACTGTACCGTTTCACATTAGAGGTTTTACTTAAATTACTCTACTAAAGAGTTTGATTTGCTTTCTGGGCGTTGAAATGAAAAGAAAGCCCGACTGAATCTGGAATGAGAATTCAGTATACGGTGTAATCCGTGATGATGCTGATAGGTACACAAACAGCATCACTTTTTTTTCTCTCTTTCAGAATTACAAAAAAGAGAGTGAAGTTAACA ] consensusID : consensus_4546#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 238 fasta sequence [ATCGTGTGCGTGACTTCGGGCGGGACGACGGTGCCGCTGGAGCAGCGCTGCGTGCGGTACATCGACAACTTCAGCTCCGGCCACCGCGGCGCCGCCTCCACCGAGTATTTTTTGAAGGCTGGCTATGCAGTTATCTTCCTCCATCGACNNNGAAGCTGCCNNCCTTATTGTAGNTTCCTCCCCGATGATTCATTCCTNGNATTCTTTGATNNNNNTGCNNNATCNNNNNNTNNNGNNN] [+] EMBL CF196702 [ATCGTGTGCGTGACTTCGGGCGGGACGACGGTGCCGCTGGAGCAGCGCTGCGTGCGGTACATCGACAACTTCAGCTCCGGCCACCGCGGCGCCGCCTCCACCGAGTATTTTTTGAAGGCTGGCTATGCAGTTATCTTCCTCCATCGACNNNGAAGCTGCCNNCCTTATTGTAGNTTCCTCCCCGATGATTCATTCCTNGNATTCTTTGATNNNNNTGCNNNATCNNNNNNTNNNGNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4546#0 GTTAATGGAGGAGGCATTGGAGTAGTTGAGCTCGATCGATGAGGAAGAAGACTAGAAGAG 60 consensus_4546#1 ------------------------------------------------------------ consensus_4546#0 GAGGAGGGACGGCGGTGGTGAGTGACAAGCGCCAACCGCGATTAATGGCGACGAGGACGT 120 consensus_4546#1 ------------------------------------------------------------ consensus_4546#0 GCGCCGTAATGGCGGCAGTGACCGATCGGAGAGGCTCCAGGTTCTTGGCGGTTGAGGCTG 180 consensus_4546#1 ------------------------------------------------------------ consensus_4546#0 GAGGCGTCGAGGCCAGCCGCGTCATCCACCCCCTTTAAATGCTTCCCGCCCCTTCGTTCT 240 consensus_4546#1 ------------------------------------------------------------ consensus_4546#0 GCTCAATCACTCGCATCCATCCATCCATCGATCGATCGATCGGCGATGGTCGCCGCCGAG 300 consensus_4546#1 ------------------------------------------------------------ consensus_4546#0 GAGAACCCGGAGTCCTTCTTCGCGGCGGCGCCGCCGCTGCGGGACGCCGACGCCGTGGCC 360 consensus_4546#1 ------------------------------------------------------------ consensus_4546#0 GCGAGGCTGGGGGAATTCATCGCCCGCAACTCCTCCGCAGCGGGCGCGGGCGGCGGCGGC 420 consensus_4546#1 ------------------------------------------------------------ consensus_4546#0 AGGCGGATCGTGTGCGTGACGTCGGGCGGGACGACGGTGCCGCTGGAGCAGCGCTGCGTG 480 consensus_4546#1 ------ATCGTGTGCGTGACTTCGGGCGGGACGACGGTGCCGCTGGAGCAGCGCTGCGTG 54 ************** *************************************** consensus_4546#0 CGGTACATCGACAACTTCAGCTCCGGCCACCGCGGCGCCGCCTCCACCGAGTATTTTTTG 540 consensus_4546#1 CGGTACATCGACAACTTCAGCTCCGGCCACCGCGGCGCCGCCTCCACCGAGTATTTTTTG 114 ************************************************************ consensus_4546#0 AAGGCTGGCTATGCAGTTATCTTCCTCCATCGACGAGGAAGCTGCCAGCCTTATTGTAGG 600 consensus_4546#1 AAGGCTGGCTATGCAGTTATCTTCCTCCATCGACNNNGAAGCTGCCNNCCTTATTGTAGN 174 ********************************** ********* *********** consensus_4546#0 TTCCTCCCCGATGATTCATTCCTCAAATTCTTTGATGTCGATGCAGAATCGAAGGTTCAA 660 consensus_4546#1 TTCCTCCCCGATGATTCATTCCTNGNATTCTTTGATNNNNNTGCNNNATCNNNNNNTNNN 234 *********************** ********** *** *** * consensus_4546#0 GTGGCGGAGTGCCACGCGCCAGTGGTCAAGAAAGCAATTGGAGATTATTGCAAGGCAATT 720 consensus_4546#1 GNNN-------------------------------------------------------- 238 * consensus_4546#0 GAAGGCGGCTATCTGTTGAAACTCCCATTCACTACAATATTTGAATACCTTCAGCTATTG 780 consensus_4546#1 ------------------------------------------------------------ consensus_4546#0 AAGATGGTTGCTACATCTATAAGTTCGGCTGGGCCACTCGGAATGTTCTATCTTGCTGCG 840 consensus_4546#1 ------------------------------------------------------------ consensus_4546#0 GCTGTGTCTGATTTCTATGTCCCTTGGGATAGCATGGCCAAACATAAGATTCAGTCAGGT 900 consensus_4546#1 ------------------------------------------------------------ consensus_4546#0 GGAGGCCCTCTGGATATGAGGCTCAGTCAAGTTCCGAAAATGCTTTCAGTGTTGCGAAAC 960 consensus_4546#1 ------------------------------------------------------------ consensus_4546#0 CAATGGGCCCCCTTGGCGTTCTGTATATCATTTAAGTTGGAGACGGATTCGGACATCCTT 1020 consensus_4546#1 ------------------------------------------------------------ consensus_4546#0 ATTCAGAAAGCAGATATGGCTCTGAACAAGTACAAGATGAACATCGTTGTGGCCAATTTG 1080 consensus_4546#1 ------------------------------------------------------------ consensus_4546#0 CTTGCAACGTACAAAGAGGAAGTCATTATTGTAACAGACAAAGAAAGGAGTACTATCCGA 1140 consensus_4546#1 ------------------------------------------------------------ consensus_4546#0 AAGATGAACAAGGATGAGGATCTGGAAATGCAGATAATCAAAATCCTATCACAGAATCAC 1200 consensus_4546#1 ------------------------------------------------------------ consensus_4546#0 TCGAAGTACATATGCGGAAGCACAAACGGGTGCGTCCAGAGCCCATATTGAATTGCGGGA 1260 consensus_4546#1 ------------------------------------------------------------ consensus_4546#0 ATCTGTACTGTACCGTTTCACATTAGAGGTTTTACTTAAATTACTCTACTAAAGAGTTTG 1320 consensus_4546#1 ------------------------------------------------------------ consensus_4546#0 ATTTGCTTTCTGGGCGTTGAAATGAAAAGAAAGCCCAACTGAATCTGGAATGAGAATTCA 1380 consensus_4546#1 ------------------------------------------------------------ consensus_4546#0 GTATACGGTGTAATCCGTGATGATGCCGATAGGTACACAAACAGCATCACTTTTTTTTCT 1440 consensus_4546#1 ------------------------------------------------------------ consensus_4546#0 CTCTTTCAGAATTACAAAAAAGAGAGTGAAGTTAACAGCGACAGCCCCAAATATAAATGG 1500 consensus_4546#1 ------------------------------------------------------------ consensus_4546#0 CTTATTTTATTTTAATCAAAATTAAT 1526 consensus_4546#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||