Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4554 cluster # 4554       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4554#0 length = 2274 sequences # 3  

consensusID : consensus_4554#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2274
fasta sequence
                              [CATCATGTTTGTTGTGACAATGTTGCAGCTTCTCCTCCTACTCCTCCTACTCCTCTCCATTTCGCTTGATGTTTCACACCTCATTGCTGAAGCAGCAGCAGCAGCAAAGCCACCTGTGTCCTTCAGCTTCAACTTCTCTGATCCATCCACCTACAGCCTAGATGACCTCCTGTTCGAAGGCGACGCGGCCAAGCCGAAAGACGGGCTGGTCGACCTCACCTCCGGCCGCAGTTGTTATCCCTATTGCCCCGCCGGCCGGATGTCGTACGCTCACCCGGTGCAGCTCTACGACGACACCACCGGCGGCGAAAAGGTGGTGGTGGCCAGCTTCTCCACGAGGTTCACCTTCACAATCAGACCCATCGACGACGGTATCAGAGGGGATGGTCTGGCTTTCTTCCTGGCCAGTTACCCATCTAAGCTGCCGGCCAACTCGTTCGGCGGCAACCTTGGACTCATCAATAACGGGACGACCACCGCCTTCGGTTCGGACCGATTCATCGCCGTCGAGTTCGACACATACAACAACACTTTCGACCCCAAGAGCATCAACCACATTGGCATTGACATCAACTCCGTCGTCAGTTCCTTGAACACCACACTCTTGCCCAACTTCAGTCTGAACGGGACAATGACAGCCCACATCGAATTCAACGGCATAACGCAGATGCTGGTCGCCTCACTGTGGCTCGCTGGCCGTCCATGGTCTGCAGCGCCTGATTATCAGGTGAGTTTACGACTGCCAGATCCGATCACGTCGTTGCTCCTGCCGCAGGTGGCCGTGGGTTTTACTGGAGCCACCGCGGACCTCAAGGAGCTCAACCAGATAATGTTATGGTCATTCAACTCAACTCTTACGCTAGTAAACCAAGACAGACGCAATAAGGCACTGCTTTTTGGAGGACCGATCATCGGAGGAGCTGTTGCATTGGCGTTAGTGCTGTGGTTCTTGATCTCTTGTTTGATGCAGAAGAGGGTACGTAATACCTTTGGAAAGGGCACAGGCGGCGCCAGGCGATTCGAATACGACGATTTGGCCATCGCGACTGGCAATTTCTCTGATGATCGCAAGCTCGGAGAGGGGGCCTTTGGGGTAGTGTACAGCGGATTCCTGAAGCGGTTGGAGCGTGAAGTTGCTGTGAAGAAAATAGTGAGGGAGTCCAGCCAAGAGCATAAAGACTTCTTCGCCGAAGTCAGCACTATCAGCGAAGCTAAGCACAAGAATCTCGTCAAGTTTTTTGGTTGGTGCTGCCGGGGACACAGCTGGAACATTCTCCGTTTCATGTGCAGCTGTTTATGGAGCAACAATAATAAGGAGCTCTTCCTTGTATATGAATTGATGAAAAATGGCAACCTCAACGACTACTTGTACAAGAGCGAGTCAGCAGCAGTACTTTCATGGCAAACAAGGTATAAAATAGCCAAGGACATTGGGTCAGGCCTGTTGTACCTACATCACGAGTGCTACCCATATATCATACACAGAGATATCAAACCAGGCAACGTACTCTTGGACGACGATTTCAACGCCAAGCTCGCTGATTTTGGTCTGTCAAGGGTCGCGAACCCGAACAATGCAACGCTGAAGACAACTGCCATAGGCTCACAAGGATACATTGATCCACAGTGCATGAAGGATGGTGAGGTCAGCTTCAACCGTAACT-CCGACGTGTACAGCTTCGGCATTGCCCTTCTTGAGATCGTCTGCGCGAGGAAACACAGGGAGCAGATCTGGGGCCTATACAAAAGCGGCGGTGATGTCGTCGAGGCTGCAGACTCAAGGCTAGCCATTGGTGTTGATGGCGCTGAAAGGAGGGAGATGGAGCGTGCCATCATCTTAGGGCTCTGGTGCTCTGTCTTCGAGACTAAACACCGGCCTACCATGCTCCAAGCAATGGATGTCCTGGAGCGTGATGCGCAGTTGCCTGACCTTAACTTAATCGTCAACTCTAATTTATCTTCAACAGACGCATCGTCAAGTTCGCCGGTCGAGAAGAGATATGACTCTGAGGAGGCACCGCTGGTTGCAGGCAGCTCTTCTAGCCAGCTAGCTGGTCGGTGAGCATCATGCTTGTCAAACAAGCTGAGACAACAAAATTCAATAAGCCTGGTGTATCACCAAGACTTCCATTCTCACGAGAGCTGCTTAGTGCTGACTGCACATTCTCATGTTGATCAGTTTATCATGTAATTGCCTTTTTCAAGAAACTTATAAACGAATAGACTACCTAAATTTGCTGCGTTGCTTTGTACGTAGCCAGATATATTAAACTT]

[+] EMBL AK073177             [CATCATGTTTGTTGTGACAATGTTGCAGCTTCTCCTCCTACTCCTCCTACTCCTCTCCATTTCGCTTGATGTTTCACACCTCATTGCTGAAGCAGCAGCAGCAGCAAAGCCACCTGTGTCCTTCAGCTTCAACTTCTCTGATCCATCCACCTACAGCCTAGATGACCTCCTGTTCGAAGGCGACGCGGCCAAGCCGAAAGACGGGCTGGTCGACCTCACCTCCGGCCGCAGTTGTTATCCCTATTGCCCCGCCGGCCGGATGTCGTACGCTCACCCGGTGCAGCTCTACGACGACACCACCGGCGGCGAAAAGGTGGTGGTGGCCAGCTTCTCCACGAGGTTCACCTTCACAATCAGACCCATCGACGACGGTATCAGAGGGGATGGTCTGGCTTTCTTCCTGGCCAGTTACCCATCTAAGCTGCCGGCCAACTCGTTCGGCGGCAACCTTGGACTCATCAATAACGGGACGACCACCGCCTTCGGTTCGGACCGATTCATCGCCGTCGAGTTCGACACATACAACAACACTTTCGACCCCAAGAGCATCAACCACATTGGCATTGACATCAACTCCGTCGTCAGTTCCTTGAACACCACACTCTTGCCCAACTTCAGTCTGAACGGGACAATGACAGCCCACATCGAATTCAACGGCATAACGCAGATGCTGGTCGCCTCACTGTGGCTCGCTGGCCGTCCATGGTCTGCAGCGCCTGATTATCAGGTGAGTTTACGACTGCCAGATCCGATCACGTCGTTGCTCCTGCCGCAGGTGGCCGTGGGTTTTACTGGAGCCACCGCGGACCTCAAGGAGCTCAACCAGATAATGTTATGGTCATTCAACTCAACTCTTACGCTAGTAAACCAAGACAGACGCAATAAGGCACTGCTTTTTGGAGGACCGATCATCGGAGGAGCTGTTGCATTGGCGTTAGTGCTGTGGTTCTTGATCTCTTGTTTGATGCAGAAGAGGGTACGTAATACCTTTGGAAAGGGCACAGGCGGCGCCAGGCGATTCGAATACGACGATTTGGCCATCGCGACTGGCAATTTCTCTGATGATCGCAAGCTCGGAGAGGGGGCCTTTGGGGTAGTGTACAGCGGATTCCTGAAGCGGTTGGAGCGTGAAGTTGCTGTGAAGAAAATAGTGAGGGAGTCCAGCCAAGAGCATAAAGACTTCTTCGCCGAAGTCAGCACTATCAGCGAAGCTAAGCACAAGAATCTCGTCAAGTTTTTTGGTTGGTGCTGCCGGGGACACAGCTGGAACATTCTCCGTTTCATGTGCAGCTGTTTATGGAGCAACAATAATAAGGAGCTCTTCCTTGTATATGAATTGATGAAAAATGGCAACCTCAACGACTACTTGTACAAGAGCGAGTCAGCAGCAGTACTTTCATGGCAAACAAGGTATAAAATAGCCAAGGACATTGGGTCAGGCCTGTTGTACCTACATCACGAGTGCTACCCATATATCATACACAGAGATATCAAACCAGGCAACGTACTCTTGGACGACGATTTCAACGCCAAGCTCGCTGATTTTGGTCTGTCAAGGGTCGCGAACCCGAACAATGCAACGCTGAAGACAACTGCCATAGGCTCACAAGGATACATTGATCCACAGTGCATGAAGGATGGTGAGGTCAGCTTCAACCGTAACT CCGACGTGTACAGCTTCGGCATTGCCCTTCTTGAGATCGTCTGCGCGAGGAAACACAGGGAGCAGATCTGGGGCCTATACAAAAGCGGCGGTGATGTCGTCGAGGCTGCAGACTCAAGGCTAGCCATTGGTGTTGATGGCGCTGAAAGGAGGGAGATGGAGCGTGCCATCATCTTAGGGCTCTGGTGCTCTGTCTTCGAGACTAAACACCGGCCTACCATGCTCCAAGCAATGGATGTCCTGGAGCGTGATGCGCAGTTGCCTGACCTTAACTTAATCGTCAACTCTAATTTATCTTCAACAGACGCATCGTCAAGTTCGCCGGTCGAGAAGAGATATGACTCTGAGGAGGCACCGCTGGTTGCAGGCAGCTCTTCTAGCCAGCTAGCTGGTCGGTGAGCATCATGCTTGTCAAACAAGCTGAGACAACAAAATTCAATAAGCCTGGTGTATCACCAAGACTTCCATTCTCACGAGAGCTGCTTAGTGCTGACTGCACATTCTCATGTTGATCAGTTTATCATGTAATTGCCTTTTTCAAGAAACTTATAAACGAATAGACTACCTAAATTTGCTGCGTTGCTTTGTACGTAGCCAGATATATTAAACTT]
[+] EMBL AU032426             [                                                                                                                                                                                                                                                                                                                                                                                  GGTATCAGAGGGGATGGTCTGGCTTTCTTCCTGGCCAGTTACCCATCTAAGCTGCCGGCCAACTCGTTCGGCGGCAACCTTGGACTCATCAATAACGGGACGACCACCGNCTTNGGTTCGGACCGATTCATCGNCGTCGAGTTCGACACATACAACAACACTTTCGACCCTAAGAGCATCANCCACATTGGTATTGACATCAACTNCGTCGTCAGTTCCTTGAGCACCACACTCTTGCCCAACTTNAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU082731             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CAACCGTAACTACCGACGTGTACAGCTTCGGCATTGCCCTTCTTGAGATCGTCTGCNCGAGGAANCACAGGGAGCAGATCTGGGGCCTATACAAAANCGGCGGTGATGTCGTCGAGGCTGCAGACTCAAGGCTAGCCATTGGTGTTGATGGCGCTGAAAGGAGGGAGATGGAGCGTGCCATCATCTTAGGGCTCTGGTGCTCTGTCTTCGAGACTAAACACCGGCCTACCATGCTCCAAGCAATGGATGTCCTGGAGCGTGATGCGCAGTTGCCTGACCTTAACTTAATCGTCAACTCTAATTTATCTTCAACAGACGCATCGTCAAGTTCGCCGGTCGAGAAGAGATATGACTCTGAGGAGGCACCGCTGGTTGCAGGCAGCTCTTCTAGCCAGCTAGCTGGTCGGTGAGCATCAGGCTTGTCAAACAAGCTGAGACAACAAAATTCAATAAGCCTGGTGTATCACCAAGACTTCCATTCTCACGAGAGCTGCTTAGTGCTGACTGCACATTCTCATGTTGATCAGTTTATCATGTAATTGCCTTTTTCAAGAAACTTATAAACGAATAGACTACCTAAAaaaa                                     ]


>consensus_4554#0 CATCATGTTTGTTGTGACAATGTTGCAGCTTCTCCTCCTACTCCTCCTACTCCTCTCCAT TTCGCTTGATGTTTCACACCTCATTGCTGAAGCAGCAGCAGCAGCAAAGCCACCTGTGTC CTTCAGCTTCAACTTCTCTGATCCATCCACCTACAGCCTAGATGACCTCCTGTTCGAAGG CGACGCGGCCAAGCCGAAAGACGGGCTGGTCGACCTCACCTCCGGCCGCAGTTGTTATCC CTATTGCCCCGCCGGCCGGATGTCGTACGCTCACCCGGTGCAGCTCTACGACGACACCAC CGGCGGCGAAAAGGTGGTGGTGGCCAGCTTCTCCACGAGGTTCACCTTCACAATCAGACC CATCGACGACGGTATCAGAGGGGATGGTCTGGCTTTCTTCCTGGCCAGTTACCCATCTAA GCTGCCGGCCAACTCGTTCGGCGGCAACCTTGGACTCATCAATAACGGGACGACCACCGC CTTCGGTTCGGACCGATTCATCGCCGTCGAGTTCGACACATACAACAACACTTTCGACCC CAAGAGCATCAACCACATTGGCATTGACATCAACTCCGTCGTCAGTTCCTTGAACACCAC ACTCTTGCCCAACTTCAGTCTGAACGGGACAATGACAGCCCACATCGAATTCAACGGCAT AACGCAGATGCTGGTCGCCTCACTGTGGCTCGCTGGCCGTCCATGGTCTGCAGCGCCTGA TTATCAGGTGAGTTTACGACTGCCAGATCCGATCACGTCGTTGCTCCTGCCGCAGGTGGC CGTGGGTTTTACTGGAGCCACCGCGGACCTCAAGGAGCTCAACCAGATAATGTTATGGTC ATTCAACTCAACTCTTACGCTAGTAAACCAAGACAGACGCAATAAGGCACTGCTTTTTGG AGGACCGATCATCGGAGGAGCTGTTGCATTGGCGTTAGTGCTGTGGTTCTTGATCTCTTG TTTGATGCAGAAGAGGGTACGTAATACCTTTGGAAAGGGCACAGGCGGCGCCAGGCGATT CGAATACGACGATTTGGCCATCGCGACTGGCAATTTCTCTGATGATCGCAAGCTCGGAGA GGGGGCCTTTGGGGTAGTGTACAGCGGATTCCTGAAGCGGTTGGAGCGTGAAGTTGCTGT GAAGAAAATAGTGAGGGAGTCCAGCCAAGAGCATAAAGACTTCTTCGCCGAAGTCAGCAC TATCAGCGAAGCTAAGCACAAGAATCTCGTCAAGTTTTTTGGTTGGTGCTGCCGGGGACA CAGCTGGAACATTCTCCGTTTCATGTGCAGCTGTTTATGGAGCAACAATAATAAGGAGCT CTTCCTTGTATATGAATTGATGAAAAATGGCAACCTCAACGACTACTTGTACAAGAGCGA GTCAGCAGCAGTACTTTCATGGCAAACAAGGTATAAAATAGCCAAGGACATTGGGTCAGG CCTGTTGTACCTACATCACGAGTGCTACCCATATATCATACACAGAGATATCAAACCAGG CAACGTACTCTTGGACGACGATTTCAACGCCAAGCTCGCTGATTTTGGTCTGTCAAGGGT CGCGAACCCGAACAATGCAACGCTGAAGACAACTGCCATAGGCTCACAAGGATACATTGA TCCACAGTGCATGAAGGATGGTGAGGTCAGCTTCAACCGTAACTCCGACGTGTACAGCTT CGGCATTGCCCTTCTTGAGATCGTCTGCGCGAGGAAACACAGGGAGCAGATCTGGGGCCT ATACAAAAGCGGCGGTGATGTCGTCGAGGCTGCAGACTCAAGGCTAGCCATTGGTGTTGA TGGCGCTGAAAGGAGGGAGATGGAGCGTGCCATCATCTTAGGGCTCTGGTGCTCTGTCTT CGAGACTAAACACCGGCCTACCATGCTCCAAGCAATGGATGTCCTGGAGCGTGATGCGCA GTTGCCTGACCTTAACTTAATCGTCAACTCTAATTTATCTTCAACAGACGCATCGTCAAG TTCGCCGGTCGAGAAGAGATATGACTCTGAGGAGGCACCGCTGGTTGCAGGCAGCTCTTC TAGCCAGCTAGCTGGTCGGTGAGCATCATGCTTGTCAAACAAGCTGAGACAACAAAATTC AATAAGCCTGGTGTATCACCAAGACTTCCATTCTCACGAGAGCTGCTTAGTGCTGACTGC ACATTCTCATGTTGATCAGTTTATCATGTAATTGCCTTTTTCAAGAAACTTATAAACGAA TAGACTACCTAAATTTGCTGCGTTGCTTTGTACGTAGCCAGATATATTAAACTT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)