These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4555#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 385 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGAAAAAAACCCGGGCTTTTTTTTTAAAATTTCCCCCCCCAAAAAAAATGGGGGGCCTTTAAAAAAAAACCCCCCCGGAGGGGGGGGGAAAAAATTTTTCCTTTTGGTTAAAAACCAAGGGCCTTGGAAAGGGGCCAAACCCAACCGGGAAAAAAAAAAATTTTGCCAATTTTTTTTTGGGTTTTTAAAAAAAAAGCCCCAAAAAAAAGGGGTTTTTTTTTTTTTTGGGGGGAATCCCCCCCCGGGGAGGTTGGTTTTTACTTAATTGGCCCCAAAATTCTTTAAAACTGGGGGGTTTTTGGGCAAAAAAATAAAAA] [+] EMBL CF336667 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGAAAAAAACCCGGGCTTTTTTTTTAAAATTTCCCCCCCCAAAAAAAATGGGGGGCCTTTAAAAAAAAACCCCCCCGGAGGGGGGGGGAAAAAATTTTTCCTTTTGGTTAAAAACCAAGGGCCTTGGAAAGGGGCCAAACCCAACCGGGAAAAAAAAAAATTTTGCCAATTTTTTTTTGGGTTTTTAAAAAAAAAGCCCCAAAAAAAAGGGGTTTTTTTTTTTTTTGGGGGGAATCCCCCCCCGGGGAGGTTGGTTTTTACTTAATTGGCCCCAAAATTCTTTAAAACTGGGGGGTTTTTGGGCAAAAAAATAAAAA] [+] EMBL CF298332 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGG AAAAAACCGGGGCTTTTTTTTTAAAAATTCCCCCCCCAAAAAAATTGGGGGTCCTTTAAAAAAAAAACCCCCCGGAAGGGGGGGGAAAAAATTTTTCCTTTTTGTTAAAAACCAAGGGCCTTTGAAAGGGGCCTAACCCAACCGGGAAAAAAAAAAATATAACCAATTTTTTTTTGGGATTTTAAAAAAAAAACCCCAAAAAAAAGGGGGTTTTTTTTTTTTTGGGGGGAATTCCCCCCCGGGGAGGTTGGTTTTTATTTAATTGGCCCCAAAATCCTTCCAAACTGGGGGGTTTTGGGGGAAAAAAAAAAA ] consensusID : consensus_4555#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 202 fasta sequence [TAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAACCCCCCCCCAACAAAAATGGGAAACCTTTAAAAAAAAACCCGCCGGGAGGGGGGGGGAAAAAATTTTTCCTTTTGGGTAAAAACCAAGGGCCTTGGAAAGGGCCCAAACCCAACCGG] [+] EMBL CF325740 [TAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAACCCCCCCCCAACAAAAATGGGAAACCTTTAAAAAAAAACCCGCCGGGAGGGGGGGGGAAAAAATTTTTCCTTTTGGGTAAAAACCAAGGGCCTTGGAAAGGGCCCAAACCCAACCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4555#0 ---TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 57 consensus_4555#1 TAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 * * ************************************************** consensus_4555#0 TTTTTTTTTGGGGAAAAAAACCCGGGCTTTTTTTTTAAAATTTCCCCCCCCAAAAAAAAT 117 consensus_4555#1 TTTTTTTTT-----------------TTTTTTTTTAAAAAAACCCCCCCCCAACAAAAAT 103 ********* ******** **** ********** ****** consensus_4555#0 GGGGGGCCTTTAAAAAAAAACCCCCCCGGAGGGGGGGGGAAAAAATTTTTCCTTTTGGTT 177 consensus_4555#1 GGGAAACCTTTAAAAAAAAACCCGCCGGGAGGGGGGGGGAAAAAATTTTTCCTTTTGGGT 163 *** ***************** ** ******************************* * consensus_4555#0 AAAAACCAAGGGCCTTGGAAAGGGGCCAAACCCAACCGGGAAAAAAAAAAATTTTGCCAA 237 consensus_4555#1 AAAAACCAAGGGCCTTGGAAAGGGCCCAAACCCAACCGG--------------------- 202 ************************ ************** consensus_4555#0 TTTTTTTTTGGGTTTTTAAAAAAAAAGCCCCAAAAAAAAGGGGTTTTTTTTTTTTTTGGG 297 consensus_4555#1 ------------------------------------------------------------ consensus_4555#0 GGGAATCCCCCCCCGGGGAGGTTGGTTTTTACTTAATTGGCCCCAAAATTCTTTAAAACT 357 consensus_4555#1 ------------------------------------------------------------ consensus_4555#0 GGGGGGTTTTTGGGCAAAAAAATAAAAA 385 consensus_4555#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||