These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4562#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 937 fasta sequence [TATGAAANTCAAANAAGCGGTGCGTGANAGGGGAAANATAGGAGGTGCCTTTCCATGGCGGCCGAGGGTTCCAGCCGCGGCGGCNGCGGACGGCCGGAAAGCCTCCTGGCTGGGGATGTCATCGGAGGGCGGCGCGGCCAAGTTCCTGTCTGGCTTGCCGTCGCGCGGCAATTTCTCCTCGATCTCCGCCTCTTCCACTCTCGGACGGCTCAGGGTTTACGTCTGCGAGCATGACACGGATCCTCCAGAGGGACAAGTTATAGAGACCGATACAACAAATATTTTGATCAGACATCTCCAGCTAAAGAAAAAGGAGATGGATGCCAAAGAAGCCAAAGAGGCCAGAGATGCAGGTTCTAGGAACCAAGGGGAAACCGTCAAATGGAAAAGAGTTGCTCCCAGAAGTTTGGATGGCCAAAGTTCATCTAAAAGGCCCAATTTGGGTAGCTCCTCTGGGCTGTCTTCTGCTGAAGAAGCGGCACCTGGATTTTCAGGTCACACACTACAGACATTCACAGTTGAGAGGTTGCGTGCACTTCTGCGACAGAGGGGCCTCATGACCAAAGGGAAAAAGGATGAACTCATCGCTCGCTTAAGAGAATCACAGGACTGATCTAGAGAAAGCTCGTGCCGTACTCTCTTTGTAGGTTGATGCAATGTGTTTCCTGATTTGCTATGTCAAGCTTTGCTGGGAGCAGAATGAGAACCAGGCTTCATCTGTTGGCTGGATGTTAAGGCTCTAGGAGATGTAGTCACTTAGGTTGGGCCTTGAGAACTTGTGCCTAATTGCATTAGCTTGTCAGAAATTTGGGCTTGGGTTCCCTGTTTGTTAGGGCTTATCCAGTGCTTTACTTGGTACATGTAGAAGGCTAATCTGGCAGTGTTTGTAACCTTTTGTCTCATACTGGAGGAGTTACCATGCTAATTTACAAGCATA] [+] EMBL C74820 [TATGAAANTCAAANAAGCGGTGCGTGANAGGGGAAANATAGGAGGTGCCTTTCCATGGCGGCCGAGGGTTCCAGCCGCGGCGGCNGCGGACGGCCGGAAAGCCTCCTGGCTGGGGATGTCATCGGAGGGCGGCGCGGCCAAGTTCCTGTCTGGCTTGCCGTCGCGCGGCAATTTCTCCTCGATCTCCGCCTCTTCCACTCTCGGACGGCTCAGGGTTTACGTCTGCGAGCATGACACGGATCCTCCAGAGGGACAAGTTATAGAGACCGATACAACAAATATTTTGATCAGACATCTCCAGCTAAAGAAAAAGGAGATGGATGCCAAAG ] [+] EMBL AK103748 [ GGGGAAAGAAAGGAGGTGCCTTTCCATGGCGGCCGAGGGTTCCAGCCGCGGCGGCGGCGG CGGCCGGAAAGCCTCCTGGCTGGGGATGTCATCGGAGGGCGGCGCGGCCAAGTTCCTGTCTGGCTTGCCGTCGCGCGGCAATTTCTCCTCGATCTCCGCCTCTTCCACTCTCGGACGGCTCAGGGTTTACGTCTGCGAGCATGACACGGATCCTCCAGAGGGACAAGTTATAGAGACCGATACAACAAATATTTTGATCAGACATCTCCAGCTAAAGAAAAAGGAGATGGATGCCAAAGAAGCCAAAGAGGCCAGAGATGCAGGTTCTAGGAACCAAGGGGAAACCGTCAAATGGAAAAGAGTTGCTCCCAGAAGTTTGGATGGCCAAAGTTCATCTAAAAGGCCCAATTTGGGTAGCTCCTCTGGGCTGTCTTCTGCTGAAGAAGCGGCACCTGGATTTTCAGGTCACACACTACAGACATTCACAGTTGAGAGGTTGCGTGCACTTCTGCGACAGAGGGGCCTCATGACCAAAGGGAAAAAGGATGAACTCATCGCTCGCTTAAGAGAATCACAGGACTGATCTAGAGAAAGCTCGTGCCGTACTCTCTTTGTAGGTTGATGCAATGTGTTTCCTGATTTGCTATGTCAAGCTTTGCTGGGAGCAGAATGAGAACCAGGCTTCATCTGTTGGCTGGATGTTAAGGCTCTAGGAGATGTAGTCACTTAGGTTGGGCCTTGAGAACTTGTGCCTAATTGCATTAGCTTGTCAGAAATTTGGGCTTGGGTTCCCTGTTTGTTAGGGCTTATCCAGTGCTTTACTTGGTACATGTAGAAGGCTAATCTGGCAGTGTTTGTAACCTTTTGTCTCATACTGGAGGAGTTACCATGCTAATTTACAAGCATA] consensusID : consensus_4562#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 248 fasta sequence [AGAAGAGTATAAAGAAGCGGCGCGAGAAAGGGGAAAGAAAGGAGGTGCCTTTCCATGGCGGCCGAGGGTTCCAGCCGCGGCGGCGGCGGCGGCCGGAAAGCCTCCTGGCTGGGGATGTCATCGGAGGGCGGCGCGGCCAACTTCCTGTCTGGTTTGCCGTCGCGCGGTTTTTTCTCCTCGATCTCCGCCTCTTCCACTCTCGGACGGCTCAGGGTTTACGTCTGCGACCATGACACGGATCCTCCAGA] [+] EMBL CA997956 [AGAAGAGTATAAAGAAGCGGCGCGAGAAAGGGGAAAGAAAGGAGGTGCCTTTCCATGGCGGCCGAGGGTTCCAGCCGCGGCGGCGGCGGCGGCCGGAAAGCCTCCTGGCTGGGGATGTCATCGGAGGGCGGCGCGGCCAACTTCCTGTCTGGTTTGCCGTCGCGCGGTTTTTTCTCCTCGATCTCCGCCTCTTCCACTCTCGGACGGCTCAGGGTTTACGTCTGCGACCATGACACGGATCCTCCAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4562#0 TATGAAANT-CAAANAAGCGGTGCGTGANAGGGGAAANATAGGAGGTGCCTTTCCATGGC 59 consensus_4562#1 -AGAAGAGTATAAAGAAGCGGCGCGAGAAAGGGGAAAGAAAGGAGGTGCCTTTCCATGGC 59 * * * * *** ****** *** ** ******** * ******************** consensus_4562#0 GGCCGAGGGTTCCAGCCGCGGCGGCNGCGGACGGCCGGAAAGCCTCCTGGCTGGGGATGT 119 consensus_4562#1 GGCCGAGGGTTCCAGCCGCGGCGGCGGCGG-CGGCCGGAAAGCCTCCTGGCTGGGGATGT 118 ************************* **** ***************************** consensus_4562#0 CATCGGAGGGCGGCGCGGCCAAGTTCCTGTCTGGCTTGCCGTCGCGCGGCAATTTCTCCT 179 consensus_4562#1 CATCGGAGGGCGGCGCGGCCAACTTCCTGTCTGGTTTGCCGTCGCGCGGTTTTTTCTCCT 178 ********************** *********** ************** ******** consensus_4562#0 CGATCTCCGCCTCTTCCACTCTCGGACGGCTCAGGGTTTACGTCTGCGAGCATGACACGG 239 consensus_4562#1 CGATCTCCGCCTCTTCCACTCTCGGACGGCTCAGGGTTTACGTCTGCGACCATGACACGG 238 ************************************************* ********** consensus_4562#0 ATCCTCCAGAGGGACAAGTTATAGAGACCGATACAACAAATATTTTGATCAGACATCTCC 299 consensus_4562#1 ATCCTCCAGA-------------------------------------------------- 248 ********** consensus_4562#0 AGCTAAAGAAAAAGGAGATGGATGCCAAAGAAGCCAAAGAGGCCAGAGATGCAGGTTCTA 359 consensus_4562#1 ------------------------------------------------------------ consensus_4562#0 GGAACCAAGGGGAAACCGTCAAATGGAAAAGAGTTGCTCCCAGAAGTTTGGATGGCCAAA 419 consensus_4562#1 ------------------------------------------------------------ consensus_4562#0 GTTCATCTAAAAGGCCCAATTTGGGTAGCTCCTCTGGGCTGTCTTCTGCTGAAGAAGCGG 479 consensus_4562#1 ------------------------------------------------------------ consensus_4562#0 CACCTGGATTTTCAGGTCACACACTACAGACATTCACAGTTGAGAGGTTGCGTGCACTTC 539 consensus_4562#1 ------------------------------------------------------------ consensus_4562#0 TGCGACAGAGGGGCCTCATGACCAAAGGGAAAAAGGATGAACTCATCGCTCGCTTAAGAG 599 consensus_4562#1 ------------------------------------------------------------ consensus_4562#0 AATCACAGGACTGATCTAGAGAAAGCTCGTGCCGTACTCTCTTTGTAGGTTGATGCAATG 659 consensus_4562#1 ------------------------------------------------------------ consensus_4562#0 TGTTTCCTGATTTGCTATGTCAAGCTTTGCTGGGAGCAGAATGAGAACCAGGCTTCATCT 719 consensus_4562#1 ------------------------------------------------------------ consensus_4562#0 GTTGGCTGGATGTTAAGGCTCTAGGAGATGTAGTCACTTAGGTTGGGCCTTGAGAACTTG 779 consensus_4562#1 ------------------------------------------------------------ consensus_4562#0 TGCCTAATTGCATTAGCTTGTCAGAAATTTGGGCTTGGGTTCCCTGTTTGTTAGGGCTTA 839 consensus_4562#1 ------------------------------------------------------------ consensus_4562#0 TCCAGTGCTTTACTTGGTACATGTAGAAGGCTAATCTGGCAGTGTTTGTAACCTTTTGTC 899 consensus_4562#1 ------------------------------------------------------------ consensus_4562#0 TCATACTGGAGGAGTTACCATGCTAATTTACAAGCATA 937 consensus_4562#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||