cluster # 4562

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Oryza sativa
cluster # 4562 cluster # 4562 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4562#0 length = 937 sequences # 2

consensus_4562#1 length = 248 sequences # 1

consensusID : consensus_4562#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 937
fasta sequence

                              [TATGAAANTCAAANAAGCGGTGCGTGANAGGGGAAANATAGGAGGTGCCTTTCCATGGCGGCCGAGGGTTCCAGCCGCGGCGGCNGCGGACGGCCGGAAAGCCTCCTGGCTGGGGATGTCATCGGAGGGCGGCGCGGCCAAGTTCCTGTCTGGCTTGCCGTCGCGCGGCAATTTCTCCTCGATCTCCGCCTCTTCCACTCTCGGACGGCTCAGGGTTTACGTCTGCGAGCATGACACGGATCCTCCAGAGGGACAAGTTATAGAGACCGATACAACAAATATTTTGATCAGACATCTCCAGCTAAAGAAAAAGGAGATGGATGCCAAAGAAGCCAAAGAGGCCAGAGATGCAGGTTCTAGGAACCAAGGGGAAACCGTCAAATGGAAAAGAGTTGCTCCCAGAAGTTTGGATGGCCAAAGTTCATCTAAAAGGCCCAATTTGGGTAGCTCCTCTGGGCTGTCTTCTGCTGAAGAAGCGGCACCTGGATTTTCAGGTCACACACTACAGACATTCACAGTTGAGAGGTTGCGTGCACTTCTGCGACAGAGGGGCCTCATGACCAAAGGGAAAAAGGATGAACTCATCGCTCGCTTAAGAGAATCACAGGACTGATCTAGAGAAAGCTCGTGCCGTACTCTCTTTGTAGGTTGATGCAATGTGTTTCCTGATTTGCTATGTCAAGCTTTGCTGGGAGCAGAATGAGAACCAGGCTTCATCTGTTGGCTGGATGTTAAGGCTCTAGGAGATGTAGTCACTTAGGTTGGGCCTTGAGAACTTGTGCCTAATTGCATTAGCTTGTCAGAAATTTGGGCTTGGGTTCCCTGTTTGTTAGGGCTTATCCAGTGCTTTACTTGGTACATGTAGAAGGCTAATCTGGCAGTGTTTGTAACCTTTTGTCTCATACTGGAGGAGTTACCATGCTAATTTACAAGCATA]

[+] EMBL C74820               [TATGAAANTCAAANAAGCGGTGCGTGANAGGGGAAANATAGGAGGTGCCTTTCCATGGCGGCCGAGGGTTCCAGCCGCGGCGGCNGCGGACGGCCGGAAAGCCTCCTGGCTGGGGATGTCATCGGAGGGCGGCGCGGCCAAGTTCCTGTCTGGCTTGCCGTCGCGCGGCAATTTCTCCTCGATCTCCGCCTCTTCCACTCTCGGACGGCTCAGGGTTTACGTCTGCGAGCATGACACGGATCCTCCAGAGGGACAAGTTATAGAGACCGATACAACAAATATTTTGATCAGACATCTCCAGCTAAAGAAAAAGGAGATGGATGCCAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK103748             [                             GGGGAAAGAAAGGAGGTGCCTTTCCATGGCGGCCGAGGGTTCCAGCCGCGGCGGCGGCGG CGGCCGGAAAGCCTCCTGGCTGGGGATGTCATCGGAGGGCGGCGCGGCCAAGTTCCTGTCTGGCTTGCCGTCGCGCGGCAATTTCTCCTCGATCTCCGCCTCTTCCACTCTCGGACGGCTCAGGGTTTACGTCTGCGAGCATGACACGGATCCTCCAGAGGGACAAGTTATAGAGACCGATACAACAAATATTTTGATCAGACATCTCCAGCTAAAGAAAAAGGAGATGGATGCCAAAGAAGCCAAAGAGGCCAGAGATGCAGGTTCTAGGAACCAAGGGGAAACCGTCAAATGGAAAAGAGTTGCTCCCAGAAGTTTGGATGGCCAAAGTTCATCTAAAAGGCCCAATTTGGGTAGCTCCTCTGGGCTGTCTTCTGCTGAAGAAGCGGCACCTGGATTTTCAGGTCACACACTACAGACATTCACAGTTGAGAGGTTGCGTGCACTTCTGCGACAGAGGGGCCTCATGACCAAAGGGAAAAAGGATGAACTCATCGCTCGCTTAAGAGAATCACAGGACTGATCTAGAGAAAGCTCGTGCCGTACTCTCTTTGTAGGTTGATGCAATGTGTTTCCTGATTTGCTATGTCAAGCTTTGCTGGGAGCAGAATGAGAACCAGGCTTCATCTGTTGGCTGGATGTTAAGGCTCTAGGAGATGTAGTCACTTAGGTTGGGCCTTGAGAACTTGTGCCTAATTGCATTAGCTTGTCAGAAATTTGGGCTTGGGTTCCCTGTTTGTTAGGGCTTATCCAGTGCTTTACTTGGTACATGTAGAAGGCTAATCTGGCAGTGTTTGTAACCTTTTGTCTCATACTGGAGGAGTTACCATGCTAATTTACAAGCATA]




>consensus_4562#0
TATGAAANTCAAANAAGCGGTGCGTGANAGGGGAAANATAGGAGGTGCCTTTCCATGGCG
GCCGAGGGTTCCAGCCGCGGCGGCNGCGGACGGCCGGAAAGCCTCCTGGCTGGGGATGTC
ATCGGAGGGCGGCGCGGCCAAGTTCCTGTCTGGCTTGCCGTCGCGCGGCAATTTCTCCTC
GATCTCCGCCTCTTCCACTCTCGGACGGCTCAGGGTTTACGTCTGCGAGCATGACACGGA
TCCTCCAGAGGGACAAGTTATAGAGACCGATACAACAAATATTTTGATCAGACATCTCCA
GCTAAAGAAAAAGGAGATGGATGCCAAAGAAGCCAAAGAGGCCAGAGATGCAGGTTCTAG
GAACCAAGGGGAAACCGTCAAATGGAAAAGAGTTGCTCCCAGAAGTTTGGATGGCCAAAG
TTCATCTAAAAGGCCCAATTTGGGTAGCTCCTCTGGGCTGTCTTCTGCTGAAGAAGCGGC
ACCTGGATTTTCAGGTCACACACTACAGACATTCACAGTTGAGAGGTTGCGTGCACTTCT
GCGACAGAGGGGCCTCATGACCAAAGGGAAAAAGGATGAACTCATCGCTCGCTTAAGAGA
ATCACAGGACTGATCTAGAGAAAGCTCGTGCCGTACTCTCTTTGTAGGTTGATGCAATGT
GTTTCCTGATTTGCTATGTCAAGCTTTGCTGGGAGCAGAATGAGAACCAGGCTTCATCTG
TTGGCTGGATGTTAAGGCTCTAGGAGATGTAGTCACTTAGGTTGGGCCTTGAGAACTTGT
GCCTAATTGCATTAGCTTGTCAGAAATTTGGGCTTGGGTTCCCTGTTTGTTAGGGCTTAT
CCAGTGCTTTACTTGGTACATGTAGAAGGCTAATCTGGCAGTGTTTGTAACCTTTTGTCT
CATACTGGAGGAGTTACCATGCTAATTTACAAGCATA

consensusID : consensus_4562#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 248
fasta sequence

                              [AGAAGAGTATAAAGAAGCGGCGCGAGAAAGGGGAAAGAAAGGAGGTGCCTTTCCATGGCGGCCGAGGGTTCCAGCCGCGGCGGCGGCGGCGGCCGGAAAGCCTCCTGGCTGGGGATGTCATCGGAGGGCGGCGCGGCCAACTTCCTGTCTGGTTTGCCGTCGCGCGGTTTTTTCTCCTCGATCTCCGCCTCTTCCACTCTCGGACGGCTCAGGGTTTACGTCTGCGACCATGACACGGATCCTCCAGA]

[+] EMBL CA997956             [AGAAGAGTATAAAGAAGCGGCGCGAGAAAGGGGAAAGAAAGGAGGTGCCTTTCCATGGCGGCCGAGGGTTCCAGCCGCGGCGGCGGCGGCGGCCGGAAAGCCTCCTGGCTGGGGATGTCATCGGAGGGCGGCGCGGCCAACTTCCTGTCTGGTTTGCCGTCGCGCGGTTTTTTCTCCTCGATCTCCGCCTCTTCCACTCTCGGACGGCTCAGGGTTTACGTCTGCGACCATGACACGGATCCTCCAGA]




>consensus_4562#1
AGAAGAGTATAAAGAAGCGGCGCGAGAAAGGGGAAAGAAAGGAGGTGCCTTTCCATGGCG
GCCGAGGGTTCCAGCCGCGGCGGCGGCGGCGGCCGGAAAGCCTCCTGGCTGGGGATGTCA
TCGGAGGGCGGCGCGGCCAACTTCCTGTCTGGTTTGCCGTCGCGCGGTTTTTTCTCCTCG
ATCTCCGCCTCTTCCACTCTCGGACGGCTCAGGGTTTACGTCTGCGACCATGACACGGAT
CCTCCAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4562#0      TATGAAANT-CAAANAAGCGGTGCGTGANAGGGGAAANATAGGAGGTGCCTTTCCATGGC 59
consensus_4562#1      -AGAAGAGTATAAAGAAGCGGCGCGAGAAAGGGGAAAGAAAGGAGGTGCCTTTCCATGGC 59
                       *  * * *  *** ****** *** ** ******** * ********************

consensus_4562#0      GGCCGAGGGTTCCAGCCGCGGCGGCNGCGGACGGCCGGAAAGCCTCCTGGCTGGGGATGT 119
consensus_4562#1      GGCCGAGGGTTCCAGCCGCGGCGGCGGCGG-CGGCCGGAAAGCCTCCTGGCTGGGGATGT 118
                      ************************* **** *****************************

consensus_4562#0      CATCGGAGGGCGGCGCGGCCAAGTTCCTGTCTGGCTTGCCGTCGCGCGGCAATTTCTCCT 179
consensus_4562#1      CATCGGAGGGCGGCGCGGCCAACTTCCTGTCTGGTTTGCCGTCGCGCGGTTTTTTCTCCT 178
                      ********************** *********** **************   ********

consensus_4562#0      CGATCTCCGCCTCTTCCACTCTCGGACGGCTCAGGGTTTACGTCTGCGAGCATGACACGG 239
consensus_4562#1      CGATCTCCGCCTCTTCCACTCTCGGACGGCTCAGGGTTTACGTCTGCGACCATGACACGG 238
                      ************************************************* **********

consensus_4562#0      ATCCTCCAGAGGGACAAGTTATAGAGACCGATACAACAAATATTTTGATCAGACATCTCC 299
consensus_4562#1      ATCCTCCAGA-------------------------------------------------- 248
                      **********                                                  

consensus_4562#0      AGCTAAAGAAAAAGGAGATGGATGCCAAAGAAGCCAAAGAGGCCAGAGATGCAGGTTCTA 359
consensus_4562#1      ------------------------------------------------------------
                                                                                  

consensus_4562#0      GGAACCAAGGGGAAACCGTCAAATGGAAAAGAGTTGCTCCCAGAAGTTTGGATGGCCAAA 419
consensus_4562#1      ------------------------------------------------------------
                                                                                  

consensus_4562#0      GTTCATCTAAAAGGCCCAATTTGGGTAGCTCCTCTGGGCTGTCTTCTGCTGAAGAAGCGG 479
consensus_4562#1      ------------------------------------------------------------
                                                                                  

consensus_4562#0      CACCTGGATTTTCAGGTCACACACTACAGACATTCACAGTTGAGAGGTTGCGTGCACTTC 539
consensus_4562#1      ------------------------------------------------------------
                                                                                  

consensus_4562#0      TGCGACAGAGGGGCCTCATGACCAAAGGGAAAAAGGATGAACTCATCGCTCGCTTAAGAG 599
consensus_4562#1      ------------------------------------------------------------
                                                                                  

consensus_4562#0      AATCACAGGACTGATCTAGAGAAAGCTCGTGCCGTACTCTCTTTGTAGGTTGATGCAATG 659
consensus_4562#1      ------------------------------------------------------------
                                                                                  

consensus_4562#0      TGTTTCCTGATTTGCTATGTCAAGCTTTGCTGGGAGCAGAATGAGAACCAGGCTTCATCT 719
consensus_4562#1      ------------------------------------------------------------
                                                                                  

consensus_4562#0      GTTGGCTGGATGTTAAGGCTCTAGGAGATGTAGTCACTTAGGTTGGGCCTTGAGAACTTG 779
consensus_4562#1      ------------------------------------------------------------
                                                                                  

consensus_4562#0      TGCCTAATTGCATTAGCTTGTCAGAAATTTGGGCTTGGGTTCCCTGTTTGTTAGGGCTTA 839
consensus_4562#1      ------------------------------------------------------------
                                                                                  

consensus_4562#0      TCCAGTGCTTTACTTGGTACATGTAGAAGGCTAATCTGGCAGTGTTTGTAACCTTTTGTC 899
consensus_4562#1      ------------------------------------------------------------
                                                                                  

consensus_4562#0      TCATACTGGAGGAGTTACCATGCTAATTTACAAGCATA 937
consensus_4562#1      --------------------------------------