These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4568#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1662 fasta sequence [CTTGTCCTCACGCAGAGAGTAGACTTGCACTGCTCTTTTATCTCTTTCTCTGGCCACCAAGCCGGTTGTTGTATATTACTAGTAGTAATCCGTCGCCGATAGCTGCTTCGTGTTGCTCGATCTTTGACCAGCCAGTGGGGTTGGAGGAGGGAGGGAGCTAGCTATAGTTGCTAGCGTGTTTACGTTTTTGCCGGCGAGGCGATCGACGGAGATGTTTGAGGGGTGCTACGGCGGAGTCGGGTCGGCGGCGGCGGCGGCGGCGCGGGACCCGAAGCCGCGGCTGCGGTGGACGCCGGACCTCCACGAGCGCTTCGTCGACGCCGTCACCAGGCTCGGCGGCCCGGACAAAGCAACACCCAAGTCGGTGCTCAGATTAATGGGCATGAAAGGCCTCACCCTGTACCATCTAAAAAGCCACCTCCAGAAATATAGACTGGGAAGGCAAAGCAAGAAATCAGCAGGCCTGGAGCTAGCAGTAGCAGATAGTGGTGGTATGTGCCTACCTTGAAATATTACTGTCATGACTCATGAGCAGAATCAAAAGTATCATGCCTTAAAGCTAAGATTTGTCCACACTTCCTACCTTTATTTTATCAGAATTTACAGCGGAAGGCATCAGTTTTTCTATCGGAGCGCCTCCAAGGAATCCTGCCGGAGGAAACAACACGGGGTAACTAGCAATTGCCCTTCTGCTTGTCCTCATAATGCACTACAATAGAATCATCATAGTCTATTACAGCTACAATGGTATATTTGTAATGGGATGTAAATCCTACTGAATGCCTTTTGTTATGTGATCTTTGGGGATTTTTAATTTCCTTCAGTGGAAGTTCTATGAGTGTCTGACTAACCATCTTTAGAACATTTCTCTTGTGAAGCAGAGAAATACCGCTTGCAGATGCGCTAAAGTATCAAGTCGAAGTCCAAAGAAAACTGCAAGAACAACTTGAGGTTCAAAAGAAGCTGCAGATGCGAATAGAAGCCCAAGGGAGGTATTTAAAGGAAATACTAGAGAAAGCTCAGAAAAACATTTCCCTGGATGTAAATGGGTCTGCTAACCTCTCATCAACCAGATCACAGATTACAGACATCAACCTAGCTCTTTCAGGTTTCATGGACAATGCAACACAAGTTCAGGAGGAAAACAATGAACTGATGAAACCTATATCTGATGACAACCTAAAAGTTAATAATTTGGGCTTTCAGCTCTACCATTTAGGAAGTCAGGAGAGTAAGGATGTTAAGTGCACTCCAAAAACTGAAGAGTTGCTTCTACTAGACTTGAATATTCAAGGAGGATATGAACTCTCTTCTAGAGGAATGCAAGGGTGTGAGTTGGATCTGAAGATCAACCAGCAGAGAAGATAGAGAGTTGTTTCACAAACCTAACAGTTTTGGAAAGTTGACCGTTCGCTATTAGTTTATTCTTTTTCCATGTGCCAGTGTTGAGCATGCTTGTGTTCACAAGTTTGTTTTTTCTGTCTGCTAATGTTAAATTTCCTGAAAGGAACTTCTGAATAAATATGGTATTATTTAGTTGTTTGAAGCTTCAATTGTATATACGAGTGAAGTGTGCAAAATGAGGGAACATCCAACACAGATGTGTATATTCTATCCAAGTATCCTATAAATTGATGTTTTACTTTTGTTCTTATTAAAAAA] [+] EMBL AK106400 [CTTGTCCTCACGCAGAGAGTAGACTTGCACTGCTCTTTTATCTCTTTCTCTGGCCACCAAGCCGGTTGTTGTATATTACTAGTAGTAATCCGTCGCCGATAGCTGCTTCGTGTTGCTCGATCTTTGACCAGCCAGTGGGGTTGGAGGAGGGAGGGAGCTAGCTATAGTTGCTAGCGTGTTTACGTTTTTGCCGGCGAGGCGATCGACGGAGATGTTTGAGGGGTGCTACGGCGGAGTCGGGTCGGCGGCGGCGGCGGCGGCGCGGGACCCGAAGCCGCGGCTGCGGTGGACGCCGGACCTCCACGAGCGCTTCGTCGACGCCGTCACCAGGCTCGGCGGCCCGGACAAAGCAACACCCAAGTCGGTGCTCAGATTAATGGGCATGAAAGGCCTCACCCTGTACCATCTAAAAAGCCACCTCCAGAAATATAGACTGGGAAGGCAAAGCAAGAAATCAGCAGGCCTGGAGCTAGCAGTAGCAGATAGTGGTGGTATGTGCCTACCTTGAAATATTACTGTCATGACTCATGAGCAGAATCAAAAGTATCATGCCTTAAAGCTAAGATTTGTCCACACTTCCTACCTTTATTTTATCAGAATTTACAGCGGAAGGCATCAGTTTTTCTATCGGAGCGCCTCCAAGGAATCCTGCCGGAGGAAACAACACGGGGTAACTAGCAATTGCCCTTCTGCTTGTCCTCATAATGCACTACAATAGAATCATCATAGTCTATTACAGCTACAATGGTATATTTGTAATGGGATGTAAATCCTACTGAATGCCTTTTGTTATGTGATCTTTGGGGATTTTTAATTTCCTTCAGTGGAAGTTCTATGAGTGTCTGACTAACCATCTTTAGAACATTTCTCTTGTGAAGCAGAGAAATACCGCTTGCAGATGCGCTAAAGTATCAAGTCGAAGTCCAAAGAAAACTGCAAGAACAACTTGAGGTTCAAAAGAAGCTGCAGATGCGAATAGAAGCCCAAGGGAGGTATTTAAAGGAAATACTAGAGAAAGCTCAGAAAAACATTTCCCTGGATGTAAATGGGTCTGCTAACCTCTCATCAACCAGATCACAGATTACAGACATCAACCTAGCTCTTTCAGGTTTCATGGACAATGCAACACAAGTTCAGGAGGAAAACAATGAACTGATGAAACCTATATCTGATGACAACCTAAAAGTTAATAATTTGGGCTTTCAGCTCTACCATTTAGGAAGTCAGGAGAGTAAGGATGTTAAGTGCACTCCAAAAACTGAAGAGTTGCTTCTACTAGACTTGAATATTCAAGGAGGATATGAACTCTCTTCTAGAGGAATGCAAGGGTGTGAGTTGGATCTGAAGATCAACCAGCAGAGAAGATAGAGAGTTGTTTCACAAACCTAACAGTTTTGGAAAGTTGACCGTTCGCTATTAGTTTATTCTTTTTCCATGTGCCAGTGTTGAGCATGCTTGTGTTCACAAGTTTGTTTTTTCTGTCTGCTAATGTTAAATTTCCTGAAAGGAACTTCTGAATAAATATGGTATTATTTAGTTGTTTGAAGCTTCAATTGTATATACGAGTGAAGTGTGCAAAATGAGGGAACATCCAACACAGATGTGTATATTCTATCCAAGTATCCTATAAATTGATG ] [+] EMBL AU222497 [ GCAAGGGTGTGAGTTGGATNTGAAGATCAACCAGCAGAGAAGATAGAGAGTTGTTTCACAAACCTAACAGTTTTGGAAAGTTGACCGTTCGCTATTAGTTTATTCTTTTTCCATGTGCCAGTGTTGAGCATGCTTGTGTTCACAAGTTTGTTTTTTCTGTCTGCTAATGTTAAATTTCCTGAAAGGAACTTNTGAATAAATATGGTATTATTTAGTTATTTGAAGCTTCAATTGTATATACGAGTGAAGTGTGCAAAATGAGGGAACATCCAACACAGATGTGTATATTCTATCCAAGTATCCTATAAATTGATGTTTTACTTTTGTTCTTATTAAAAAA] consensusID : consensus_4568#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 234 fasta sequence [ACGTAGCATGTAAGACTTNCACNGCTCTTTTATCTCTTTCTCTGGCCACCAAGCTGGTTGTTGTATATNACTAGTAGTAATCCGTCGCCGATAGCTGCTTCGTGTTGCTCGATCTTTGACCAGCCAGTNGGGTTGGAGGAGGGAGGGAGCTAGCTATAGTTGCNAGCGTGTTTACGTTTTTACCGGCGANGAGTCGACGGAGATNTTTGAGGGGTGCTACGGCGGAGTCNGGTC] [+] EMBL C25910 [ACGTAGCATGTAAGACTTNCACNGCTCTTTTATCTCTTTCTCTGGCCACCAAGCTGGTTGTTGTATATNACTAGTAGTAATCCGTCGCCGATAGCTGCTTCGTGTTGCTCGATCTTTGACCAGCCAGTNGGGTTGGAGGAGGGAGGGAGCTAGCTATAGTTGCNAGCGTGTTTACGTTTTTACCGGCGANGAGTCGACGGAGATNTTTGAGGGGTGCTACGGCGGAGTCNGGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4568#0 CTTGTCCTCACGCAGAGAGTA-GACTTGCACTGCTCTTTTATCTCTTTCTCTGGCCACCA 59 consensus_4568#1 ---------ACGTAGCATGTAAGACTTNCACNGCTCTTTTATCTCTTTCTCTGGCCACCA 51 *** ** *** ***** *** **************************** consensus_4568#0 AGCCGGTTGTTGTATATTACTAGTAGTAATCCGTCGCCGATAGCTGCTTCGTGTTGCTCG 119 consensus_4568#1 AGCTGGTTGTTGTATATNACTAGTAGTAATCCGTCGCCGATAGCTGCTTCGTGTTGCTCG 111 *** ************* ****************************************** consensus_4568#0 ATCTTTGACCAGCCAGTGGGGTTGGAGGAGGGAGGGAGCTAGCTATAGTTGCTAGCGTGT 179 consensus_4568#1 ATCTTTGACCAGCCAGTNGGGTTGGAGGAGGGAGGGAGCTAGCTATAGTTGCNAGCGTGT 171 ***************** ********************************** ******* consensus_4568#0 TTACGTTTTTGCCGGCGAGGCGATCGACGGAGATGTTTGAGGGGTGCTACGGCGGAGTCG 239 consensus_4568#1 TTACGTTTTTACCGGCGANG-AGTCGACGGAGATNTTTGAGGGGTGCTACGGCGGAGTCN 230 ********** ******* * *********** ************************ consensus_4568#0 GGTCGGCGGCGGCGGCGGCGGCGCGGGACCCGAAGCCGCGGCTGCGGTGGACGCCGGACC 299 consensus_4568#1 GGTC-------------------------------------------------------- 234 **** consensus_4568#0 TCCACGAGCGCTTCGTCGACGCCGTCACCAGGCTCGGCGGCCCGGACAAAGCAACACCCA 359 consensus_4568#1 ------------------------------------------------------------ consensus_4568#0 AGTCGGTGCTCAGATTAATGGGCATGAAAGGCCTCACCCTGTACCATCTAAAAAGCCACC 419 consensus_4568#1 ------------------------------------------------------------ consensus_4568#0 TCCAGAAATATAGACTGGGAAGGCAAAGCAAGAAATCAGCAGGCCTGGAGCTAGCAGTAG 479 consensus_4568#1 ------------------------------------------------------------ consensus_4568#0 CAGATAGTGGTGGTATGTGCCTACCTTGAAATATTACTGTCATGACTCATGAGCAGAATC 539 consensus_4568#1 ------------------------------------------------------------ consensus_4568#0 AAAAGTATCATGCCTTAAAGCTAAGATTTGTCCACACTTCCTACCTTTATTTTATCAGAA 599 consensus_4568#1 ------------------------------------------------------------ consensus_4568#0 TTTACAGCGGAAGGCATCAGTTTTTCTATCGGAGCGCCTCCAAGGAATCCTGCCGGAGGA 659 consensus_4568#1 ------------------------------------------------------------ consensus_4568#0 AACAACACGGGGTAACTAGCAATTGCCCTTCTGCTTGTCCTCATAATGCACTACAATAGA 719 consensus_4568#1 ------------------------------------------------------------ consensus_4568#0 ATCATCATAGTCTATTACAGCTACAATGGTATATTTGTAATGGGATGTAAATCCTACTGA 779 consensus_4568#1 ------------------------------------------------------------ consensus_4568#0 ATGCCTTTTGTTATGTGATCTTTGGGGATTTTTAATTTCCTTCAGTGGAAGTTCTATGAG 839 consensus_4568#1 ------------------------------------------------------------ consensus_4568#0 TGTCTGACTAACCATCTTTAGAACATTTCTCTTGTGAAGCAGAGAAATACCGCTTGCAGA 899 consensus_4568#1 ------------------------------------------------------------ consensus_4568#0 TGCGCTAAAGTATCAAGTCGAAGTCCAAAGAAAACTGCAAGAACAACTTGAGGTTCAAAA 959 consensus_4568#1 ------------------------------------------------------------ consensus_4568#0 GAAGCTGCAGATGCGAATAGAAGCCCAAGGGAGGTATTTAAAGGAAATACTAGAGAAAGC 1019 consensus_4568#1 ------------------------------------------------------------ consensus_4568#0 TCAGAAAAACATTTCCCTGGATGTAAATGGGTCTGCTAACCTCTCATCAACCAGATCACA 1079 consensus_4568#1 ------------------------------------------------------------ consensus_4568#0 GATTACAGACATCAACCTAGCTCTTTCAGGTTTCATGGACAATGCAACACAAGTTCAGGA 1139 consensus_4568#1 ------------------------------------------------------------ consensus_4568#0 GGAAAACAATGAACTGATGAAACCTATATCTGATGACAACCTAAAAGTTAATAATTTGGG 1199 consensus_4568#1 ------------------------------------------------------------ consensus_4568#0 CTTTCAGCTCTACCATTTAGGAAGTCAGGAGAGTAAGGATGTTAAGTGCACTCCAAAAAC 1259 consensus_4568#1 ------------------------------------------------------------ consensus_4568#0 TGAAGAGTTGCTTCTACTAGACTTGAATATTCAAGGAGGATATGAACTCTCTTCTAGAGG 1319 consensus_4568#1 ------------------------------------------------------------ consensus_4568#0 AATGCAAGGGTGTGAGTTGGATCTGAAGATCAACCAGCAGAGAAGATAGAGAGTTGTTTC 1379 consensus_4568#1 ------------------------------------------------------------ consensus_4568#0 ACAAACCTAACAGTTTTGGAAAGTTGACCGTTCGCTATTAGTTTATTCTTTTTCCATGTG 1439 consensus_4568#1 ------------------------------------------------------------ consensus_4568#0 CCAGTGTTGAGCATGCTTGTGTTCACAAGTTTGTTTTTTCTGTCTGCTAATGTTAAATTT 1499 consensus_4568#1 ------------------------------------------------------------ consensus_4568#0 CCTGAAAGGAACTTCTGAATAAATATGGTATTATTTAGTTGTTTGAAGCTTCAATTGTAT 1559 consensus_4568#1 ------------------------------------------------------------ consensus_4568#0 ATACGAGTGAAGTGTGCAAAATGAGGGAACATCCAACACAGATGTGTATATTCTATCCAA 1619 consensus_4568#1 ------------------------------------------------------------ consensus_4568#0 GTATCCTATAAATTGATGTTTTACTTTTGTTCTTATTAAAAAA 1662 consensus_4568#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||