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Oryza sativa
cluster # 4569 cluster # 4569       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4569#0 length = 1027 sequences # 1  
consensus_4569#1 length = 410 sequences # 1  
consensus_4569#2 length = 91 sequences # 1  

consensusID : consensus_4569#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1027
fasta sequence
                              [AGGACCTGCGCCTTGAAGGCGTCCACGTGCGCCGGGTCGATGGACACCGAGAGCTGCACCTCGCCGTCGCGCCGGCCGCCGACGAGCACCATCTCGCCGTCGTGGTTCATCGACACGAGCTCGACGCGCGCCGGCCTCCCGAACCCGAAGTCGGCGGCGCCGTACGCCCCGAACCGTGGGCTCGCCGCCACGTTCGCCATGCGGGAGAAGGGGATCTGCATCACCCGCGCGATCGCCGACCCGTCCGCCGTCCCGGCGAGCGGCGCCGCCTCCATCTCCGCCACCGCCGCCTGAACCGCCCGCGCCGCGCGCAGCAGCCCGCGCTCGCCGCGGAGCTCCGCCGCGTTGGCGCAGCGCGCCAGGCACATCCTCACGCAGTTCCCGAGGTACCCCTCGCCGACGGCGGGGTCGAGCCGCGCCCGGAGGTCGGCGAGGAAGATCAGGTACGTGTCGTCCCCGTCGGCGAGCGCCTTGGACCGGACGAACGCCGCCCACCCCATCGCCGCCAGCGCCACGAACGTCGACACCGGCTTGGCGGCGCCGCCGCCATCGGCAGCCTCCTCCGCCGAGGCGAGCTCGTCGATGCGCCGCTTCAACGCGCGGATGGCGTCGGCGCCGAGGCGGAACGTCCGGCGAGCCAGCCGGAATCGCTGGCTGAAGTCCTGCTGATCCCCGCTCGCCTGCAAGCATCCATGGCGGGTGGTGGTGATCTCGTCAGTAAATTTGCATTCACGGCGAGCGAGAGAGAGATCATGACGCGTGCATGCCATTGCTTGCTCCGCCACGCCACCGCGGCGAGCTCCGCATGCGCTTAACATTGGGGGGAGAAGGAAACCATGGTTGGATGGCGTACCAAGCAAAGGTTGACGACACATACACACTTCGAAGAGGCTACACTACACTACAGTACATGCTTCATGCATGATGGAAGCTTCGATTTTTGTTTATTTATTTGAACTACCAGAAAGATTTTTTGGGCTGTTTTTTTTATTTGGTTGAATTTTATTCAGAATTCAAATACATTACA]

[+] EMBL AK108243             [AGGACCTGCGCCTTGAAGGCGTCCACGTGCGCCGGGTCGATGGACACCGAGAGCTGCACCTCGCCGTCGCGCCGGCCGCCGACGAGCACCATCTCGCCGTCGTGGTTCATCGACACGAGCTCGACGCGCGCCGGCCTCCCGAACCCGAAGTCGGCGGCGCCGTACGCCCCGAACCGTGGGCTCGCCGCCACGTTCGCCATGCGGGAGAAGGGGATCTGCATCACCCGCGCGATCGCCGACCCGTCCGCCGTCCCGGCGAGCGGCGCCGCCTCCATCTCCGCCACCGCCGCCTGAACCGCCCGCGCCGCGCGCAGCAGCCCGCGCTCGCCGCGGAGCTCCGCCGCGTTGGCGCAGCGCGCCAGGCACATCCTCACGCAGTTCCCGAGGTACCCCTCGCCGACGGCGGGGTCGAGCCGCGCCCGGAGGTCGGCGAGGAAGATCAGGTACGTGTCGTCCCCGTCGGCGAGCGCCTTGGACCGGACGAACGCCGCCCACCCCATCGCCGCCAGCGCCACGAACGTCGACACCGGCTTGGCGGCGCCGCCGCCATCGGCAGCCTCCTCCGCCGAGGCGAGCTCGTCGATGCGCCGCTTCAACGCGCGGATGGCGTCGGCGCCGAGGCGGAACGTCCGGCGAGCCAGCCGGAATCGCTGGCTGAAGTCCTGCTGATCCCCGCTCGCCTGCAAGCATCCATGGCGGGTGGTGGTGATCTCGTCAGTAAATTTGCATTCACGGCGAGCGAGAGAGAGATCATGACGCGTGCATGCCATTGCTTGCTCCGCCACGCCACCGCGGCGAGCTCCGCATGCGCTTAACATTGGGGGGAGAAGGAAACCATGGTTGGATGGCGTACCAAGCAAAGGTTGACGACACATACACACTTCGAAGAGGCTACACTACACTACAGTACATGCTTCATGCATGATGGAAGCTTCGATTTTTGTTTATTTATTTGAACTACCAGAAAGATTTTTTGGGCTGTTTTTTTTATTTGGTTGAATTTTATTCAGAATTCAAATACATTACA]


>consensus_4569#0 AGGACCTGCGCCTTGAAGGCGTCCACGTGCGCCGGGTCGATGGACACCGAGAGCTGCACC TCGCCGTCGCGCCGGCCGCCGACGAGCACCATCTCGCCGTCGTGGTTCATCGACACGAGC TCGACGCGCGCCGGCCTCCCGAACCCGAAGTCGGCGGCGCCGTACGCCCCGAACCGTGGG CTCGCCGCCACGTTCGCCATGCGGGAGAAGGGGATCTGCATCACCCGCGCGATCGCCGAC CCGTCCGCCGTCCCGGCGAGCGGCGCCGCCTCCATCTCCGCCACCGCCGCCTGAACCGCC CGCGCCGCGCGCAGCAGCCCGCGCTCGCCGCGGAGCTCCGCCGCGTTGGCGCAGCGCGCC AGGCACATCCTCACGCAGTTCCCGAGGTACCCCTCGCCGACGGCGGGGTCGAGCCGCGCC CGGAGGTCGGCGAGGAAGATCAGGTACGTGTCGTCCCCGTCGGCGAGCGCCTTGGACCGG ACGAACGCCGCCCACCCCATCGCCGCCAGCGCCACGAACGTCGACACCGGCTTGGCGGCG CCGCCGCCATCGGCAGCCTCCTCCGCCGAGGCGAGCTCGTCGATGCGCCGCTTCAACGCG CGGATGGCGTCGGCGCCGAGGCGGAACGTCCGGCGAGCCAGCCGGAATCGCTGGCTGAAG TCCTGCTGATCCCCGCTCGCCTGCAAGCATCCATGGCGGGTGGTGGTGATCTCGTCAGTA AATTTGCATTCACGGCGAGCGAGAGAGAGATCATGACGCGTGCATGCCATTGCTTGCTCC GCCACGCCACCGCGGCGAGCTCCGCATGCGCTTAACATTGGGGGGAGAAGGAAACCATGG TTGGATGGCGTACCAAGCAAAGGTTGACGACACATACACACTTCGAAGAGGCTACACTAC ACTACAGTACATGCTTCATGCATGATGGAAGCTTCGATTTTTGTTTATTTATTTGAACTA CCAGAAAGATTTTTTGGGCTGTTTTTTTTATTTGGTTGAATTTTATTCAGAATTCAAATA CATTACA



consensusID : consensus_4569#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence
                              [TTTTTTTTGGAGTAGAAAAAACTATTACTTTGCTGTTTAACTTTGATTTCTGACACTAACATCAGAAGCTTGATTACAAGACAGGCAAAAATACAAATAANANTATNATTATTATTATTAACTAATTAANNGATAGNGCCAAANGGTACTCCTANGGCACTGAGNAGCATCAGCTAGCCGAGGACCTGCGCCTTGAAGGCGNCCACGTGCGCCGGGTCGATGGACACCGAGAGCTGCACCTCGCCGTCGCGCCGGCCGCCGACGAGCACCATCTCGCCGNCGNGGNTCATCGACACGAGCTCGACGCGCGCCGGCCTCCCGAACCCGAAGCCGGANGNGCCNGACGCCCNNGNAACGCGNTCNCNGAGNCAGCGCGTGCTNNGCCGNGANGANTGNGAATGGCGNNNCCG]

[-] EMBL AT003518             [TTTTTTTTGGAGTAGAAAAAACTATTACTTTGCTGTTTAACTTTGATTTCTGACACTAACATCAGAAGCTTGATTACAAGACAGGCAAAAATACAAATAANANTATNATTATTATTATTAACTAATTAANNGATAGNGCCAAANGGTACTCCTANGGCACTGAGNAGCATCAGCTAGCCGAGGACCTGCGCCTTGAAGGCGNCCACGTGCGCCGGGTCGATGGACACCGAGAGCTGCACCTCGCCGTCGCGCCGGCCGCCGACGAGCACCATCTCGCCGNCGNGGNTCATCGACACGAGCTCGACGCGCGCCGGCCTCCCGAACCCGAAGCCGGANGNGCCNGACGCCCNNGNAACGCGNTCNCNGAGNCAGCGCGTGCTNNGCCGNGANGANTGNGAATGGCGNNNCCG]


>consensus_4569#1 TTTTTTTTGGAGTAGAAAAAACTATTACTTTGCTGTTTAACTTTGATTTCTGACACTAAC ATCAGAAGCTTGATTACAAGACAGGCAAAAATACAAATAANANTATNATTATTATTATTA ACTAATTAANNGATAGNGCCAAANGGTACTCCTANGGCACTGAGNAGCATCAGCTAGCCG AGGACCTGCGCCTTGAAGGCGNCCACGTGCGCCGGGTCGATGGACACCGAGAGCTGCACC TCGCCGTCGCGCCGGCCGCCGACGAGCACCATCTCGCCGNCGNGGNTCATCGACACGAGC TCGACGCGCGCCGGCCTCCCGAACCCGAAGCCGGANGNGCCNGACGCCCNNGNAACGCGN TCNCNGAGNCAGCGCGTGCTNNGCCGNGANGANTGNGAATGGCGNNNCCG



consensusID : consensus_4569#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 91
fasta sequence
                              [TATTTGTATTTNTGCCTGTCTTGTAATCAAACTTCTGATGTTAGTGTCAGNAATNNNAGTTANACAGCAAAGTNATNGTTTTTTCTAANAA]

[+] EMBL AU091888             [TATTTGTATTTNTGCCTGTCTTGTAATCAAACTTCTGATGTTAGTGTCAGNAATNNNAGTTANACAGCAAAGTNATNGTTTTTTCTAANAA]


>consensus_4569#2 TATTTGTATTTNTGCCTGTCTTGTAATCAAACTTCTGATGTTAGTGTCAGNAATNNNAGT TANACAGCAAAGTNATNGTTTTTTCTAANAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4569#0      AGGACCTGCGCCTTGAAGGCGTCCACGTGCGCCGGGTCGATGGACACCGAGAGCTGC-AC 59
consensus_4569#1      --------------------------------TTTTTTTTGGAGTAGAAAAAACTATTAC 28
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      CTCGCCGTC--GCGCCGGCCGCCGACGAGCACCATCTCGCCGTCG--TGGTTCATCGACA 115
consensus_4569#1      TTTGCTGTTTAACTTTGATTTCTGAC-ACTAACATCAGAAGCTTGATTACAAGACAGGCA 87
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      CGAGCTCGACGCGCGCCGGCCTCCCGAACCCGAAGTCGGCGGCGCCGTACGCCCCGAACC 175
consensus_4569#1      AAAATACAAATAANANTATNATTATTATTATTAACTAATTAAN--NGATAGNGCCAAANG 145
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      GTGGGCTCGCCGCCACGTTCGCCATGCGGGAGAAGGGGATCTGCATCACCCGCGCGATCG 235
consensus_4569#1      GTACTCCTANGGCACTGAGNAGCATCAGCTAGCCGAGGACCTGCGCCTTGAAGGCGNCCA 205
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      CCGACCCGTCCGCCGTCCCGGCGAGCGGCGCCGCCTCCATCTCCGCCACCGCCGCCTGAA 295
consensus_4569#1      C------GTGCGCCGGGTCGATGGACACCGAGAGCTGCACCTC----GCCGTCGC----G 251
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      CCGCCCGCGCCGCGCGCAGCAGCCCGCGCTCGCCGCGGAGCTCCGCCGCGTTGGCGCAGC 355
consensus_4569#1      CCGGCCGC-CGACGAGCACCATCTCGC---CGNCGNGGNTCATCGACACGAGCTCGACGC 307
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      GCGCCAGGCACATCCTCACGCAGTTCCCGAGGTACCCCTCGCCGACGG--CGGGGTCG-A 412
consensus_4569#1      GCGCCGGCCTC--CCGAACCCGAAGCCGGANGNGCCNGACGCCCNNGNAACGCGNTCNCN 365
consensus_4569#2      -----------------------TATTTGTATTTNTGCCTGTCTTGTAATCAAACTTCTG 37
                                                  *           * *       *    *    

consensus_4569#0      GCCGCGCCCGGAGGTCGGCGAGGAAGATCAGGTACGTGTCGTCCCCGTCGGCGAGCGCCT 472
consensus_4569#1      GAGNCAGCGCGTGCTNNGCCGNGANGANTGNGAA--TGGCGNNNCCG------------- 410
consensus_4569#2      ATGTTAGTGTCAGNAATNNNAGTTANACAGCAAAGTNATNGTTTTTTCTAANAA------ 91
                                  *             *      *      *                   

consensus_4569#0      TGGACCGGACGAACGCCGCCCACCCCATCGCCGCCAGCGCCACGAACGTCGACACCGGCT 532
consensus_4569#1      ------------------------------------------------------------
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      TGGCGGCGCCGCCGCCATCGGCAGCCTCCTCCGCCGAGGCGAGCTCGTCGATGCGCCGCT 592
consensus_4569#1      ------------------------------------------------------------
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      TCAACGCGCGGATGGCGTCGGCGCCGAGGCGGAACGTCCGGCGAGCCAGCCGGAATCGCT 652
consensus_4569#1      ------------------------------------------------------------
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      GGCTGAAGTCCTGCTGATCCCCGCTCGCCTGCAAGCATCCATGGCGGGTGGTGGTGATCT 712
consensus_4569#1      ------------------------------------------------------------
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      CGTCAGTAAATTTGCATTCACGGCGAGCGAGAGAGAGATCATGACGCGTGCATGCCATTG 772
consensus_4569#1      ------------------------------------------------------------
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      CTTGCTCCGCCACGCCACCGCGGCGAGCTCCGCATGCGCTTAACATTGGGGGGAGAAGGA 832
consensus_4569#1      ------------------------------------------------------------
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      AACCATGGTTGGATGGCGTACCAAGCAAAGGTTGACGACACATACACACTTCGAAGAGGC 892
consensus_4569#1      ------------------------------------------------------------
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      TACACTACACTACAGTACATGCTTCATGCATGATGGAAGCTTCGATTTTTGTTTATTTAT 952
consensus_4569#1      ------------------------------------------------------------
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      TTGAACTACCAGAAAGATTTTTTGGGCTGTTTTTTTTATTTGGTTGAATTTTATTCAGAA 1012
consensus_4569#1      ------------------------------------------------------------
consensus_4569#2      ------------------------------------------------------------
                                                                                  

consensus_4569#0      TTCAAATACATTACA 1027
consensus_4569#1      ---------------
consensus_4569#2      ---------------
                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)