These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4569#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1027 fasta sequence [AGGACCTGCGCCTTGAAGGCGTCCACGTGCGCCGGGTCGATGGACACCGAGAGCTGCACCTCGCCGTCGCGCCGGCCGCCGACGAGCACCATCTCGCCGTCGTGGTTCATCGACACGAGCTCGACGCGCGCCGGCCTCCCGAACCCGAAGTCGGCGGCGCCGTACGCCCCGAACCGTGGGCTCGCCGCCACGTTCGCCATGCGGGAGAAGGGGATCTGCATCACCCGCGCGATCGCCGACCCGTCCGCCGTCCCGGCGAGCGGCGCCGCCTCCATCTCCGCCACCGCCGCCTGAACCGCCCGCGCCGCGCGCAGCAGCCCGCGCTCGCCGCGGAGCTCCGCCGCGTTGGCGCAGCGCGCCAGGCACATCCTCACGCAGTTCCCGAGGTACCCCTCGCCGACGGCGGGGTCGAGCCGCGCCCGGAGGTCGGCGAGGAAGATCAGGTACGTGTCGTCCCCGTCGGCGAGCGCCTTGGACCGGACGAACGCCGCCCACCCCATCGCCGCCAGCGCCACGAACGTCGACACCGGCTTGGCGGCGCCGCCGCCATCGGCAGCCTCCTCCGCCGAGGCGAGCTCGTCGATGCGCCGCTTCAACGCGCGGATGGCGTCGGCGCCGAGGCGGAACGTCCGGCGAGCCAGCCGGAATCGCTGGCTGAAGTCCTGCTGATCCCCGCTCGCCTGCAAGCATCCATGGCGGGTGGTGGTGATCTCGTCAGTAAATTTGCATTCACGGCGAGCGAGAGAGAGATCATGACGCGTGCATGCCATTGCTTGCTCCGCCACGCCACCGCGGCGAGCTCCGCATGCGCTTAACATTGGGGGGAGAAGGAAACCATGGTTGGATGGCGTACCAAGCAAAGGTTGACGACACATACACACTTCGAAGAGGCTACACTACACTACAGTACATGCTTCATGCATGATGGAAGCTTCGATTTTTGTTTATTTATTTGAACTACCAGAAAGATTTTTTGGGCTGTTTTTTTTATTTGGTTGAATTTTATTCAGAATTCAAATACATTACA] [+] EMBL AK108243 [AGGACCTGCGCCTTGAAGGCGTCCACGTGCGCCGGGTCGATGGACACCGAGAGCTGCACCTCGCCGTCGCGCCGGCCGCCGACGAGCACCATCTCGCCGTCGTGGTTCATCGACACGAGCTCGACGCGCGCCGGCCTCCCGAACCCGAAGTCGGCGGCGCCGTACGCCCCGAACCGTGGGCTCGCCGCCACGTTCGCCATGCGGGAGAAGGGGATCTGCATCACCCGCGCGATCGCCGACCCGTCCGCCGTCCCGGCGAGCGGCGCCGCCTCCATCTCCGCCACCGCCGCCTGAACCGCCCGCGCCGCGCGCAGCAGCCCGCGCTCGCCGCGGAGCTCCGCCGCGTTGGCGCAGCGCGCCAGGCACATCCTCACGCAGTTCCCGAGGTACCCCTCGCCGACGGCGGGGTCGAGCCGCGCCCGGAGGTCGGCGAGGAAGATCAGGTACGTGTCGTCCCCGTCGGCGAGCGCCTTGGACCGGACGAACGCCGCCCACCCCATCGCCGCCAGCGCCACGAACGTCGACACCGGCTTGGCGGCGCCGCCGCCATCGGCAGCCTCCTCCGCCGAGGCGAGCTCGTCGATGCGCCGCTTCAACGCGCGGATGGCGTCGGCGCCGAGGCGGAACGTCCGGCGAGCCAGCCGGAATCGCTGGCTGAAGTCCTGCTGATCCCCGCTCGCCTGCAAGCATCCATGGCGGGTGGTGGTGATCTCGTCAGTAAATTTGCATTCACGGCGAGCGAGAGAGAGATCATGACGCGTGCATGCCATTGCTTGCTCCGCCACGCCACCGCGGCGAGCTCCGCATGCGCTTAACATTGGGGGGAGAAGGAAACCATGGTTGGATGGCGTACCAAGCAAAGGTTGACGACACATACACACTTCGAAGAGGCTACACTACACTACAGTACATGCTTCATGCATGATGGAAGCTTCGATTTTTGTTTATTTATTTGAACTACCAGAAAGATTTTTTGGGCTGTTTTTTTTATTTGGTTGAATTTTATTCAGAATTCAAATACATTACA] consensusID : consensus_4569#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [TTTTTTTTGGAGTAGAAAAAACTATTACTTTGCTGTTTAACTTTGATTTCTGACACTAACATCAGAAGCTTGATTACAAGACAGGCAAAAATACAAATAANANTATNATTATTATTATTAACTAATTAANNGATAGNGCCAAANGGTACTCCTANGGCACTGAGNAGCATCAGCTAGCCGAGGACCTGCGCCTTGAAGGCGNCCACGTGCGCCGGGTCGATGGACACCGAGAGCTGCACCTCGCCGTCGCGCCGGCCGCCGACGAGCACCATCTCGCCGNCGNGGNTCATCGACACGAGCTCGACGCGCGCCGGCCTCCCGAACCCGAAGCCGGANGNGCCNGACGCCCNNGNAACGCGNTCNCNGAGNCAGCGCGTGCTNNGCCGNGANGANTGNGAATGGCGNNNCCG] [-] EMBL AT003518 [TTTTTTTTGGAGTAGAAAAAACTATTACTTTGCTGTTTAACTTTGATTTCTGACACTAACATCAGAAGCTTGATTACAAGACAGGCAAAAATACAAATAANANTATNATTATTATTATTAACTAATTAANNGATAGNGCCAAANGGTACTCCTANGGCACTGAGNAGCATCAGCTAGCCGAGGACCTGCGCCTTGAAGGCGNCCACGTGCGCCGGGTCGATGGACACCGAGAGCTGCACCTCGCCGTCGCGCCGGCCGCCGACGAGCACCATCTCGCCGNCGNGGNTCATCGACACGAGCTCGACGCGCGCCGGCCTCCCGAACCCGAAGCCGGANGNGCCNGACGCCCNNGNAACGCGNTCNCNGAGNCAGCGCGTGCTNNGCCGNGANGANTGNGAATGGCGNNNCCG] consensusID : consensus_4569#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 91 fasta sequence [TATTTGTATTTNTGCCTGTCTTGTAATCAAACTTCTGATGTTAGTGTCAGNAATNNNAGTTANACAGCAAAGTNATNGTTTTTTCTAANAA] [+] EMBL AU091888 [TATTTGTATTTNTGCCTGTCTTGTAATCAAACTTCTGATGTTAGTGTCAGNAATNNNAGTTANACAGCAAAGTNATNGTTTTTTCTAANAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4569#0 AGGACCTGCGCCTTGAAGGCGTCCACGTGCGCCGGGTCGATGGACACCGAGAGCTGC-AC 59 consensus_4569#1 --------------------------------TTTTTTTTGGAGTAGAAAAAACTATTAC 28 consensus_4569#2 ------------------------------------------------------------ consensus_4569#0 CTCGCCGTC--GCGCCGGCCGCCGACGAGCACCATCTCGCCGTCG--TGGTTCATCGACA 115 consensus_4569#1 TTTGCTGTTTAACTTTGATTTCTGAC-ACTAACATCAGAAGCTTGATTACAAGACAGGCA 87 consensus_4569#2 ------------------------------------------------------------ consensus_4569#0 CGAGCTCGACGCGCGCCGGCCTCCCGAACCCGAAGTCGGCGGCGCCGTACGCCCCGAACC 175 consensus_4569#1 AAAATACAAATAANANTATNATTATTATTATTAACTAATTAAN--NGATAGNGCCAAANG 145 consensus_4569#2 ------------------------------------------------------------ consensus_4569#0 GTGGGCTCGCCGCCACGTTCGCCATGCGGGAGAAGGGGATCTGCATCACCCGCGCGATCG 235 consensus_4569#1 GTACTCCTANGGCACTGAGNAGCATCAGCTAGCCGAGGACCTGCGCCTTGAAGGCGNCCA 205 consensus_4569#2 ------------------------------------------------------------ consensus_4569#0 CCGACCCGTCCGCCGTCCCGGCGAGCGGCGCCGCCTCCATCTCCGCCACCGCCGCCTGAA 295 consensus_4569#1 C------GTGCGCCGGGTCGATGGACACCGAGAGCTGCACCTC----GCCGTCGC----G 251 consensus_4569#2 ------------------------------------------------------------ consensus_4569#0 CCGCCCGCGCCGCGCGCAGCAGCCCGCGCTCGCCGCGGAGCTCCGCCGCGTTGGCGCAGC 355 consensus_4569#1 CCGGCCGC-CGACGAGCACCATCTCGC---CGNCGNGGNTCATCGACACGAGCTCGACGC 307 consensus_4569#2 ------------------------------------------------------------ consensus_4569#0 GCGCCAGGCACATCCTCACGCAGTTCCCGAGGTACCCCTCGCCGACGG--CGGGGTCG-A 412 consensus_4569#1 GCGCCGGCCTC--CCGAACCCGAAGCCGGANGNGCCNGACGCCCNNGNAACGCGNTCNCN 365 consensus_4569#2 -----------------------TATTTGTATTTNTGCCTGTCTTGTAATCAAACTTCTG 37 * * * * * consensus_4569#0 GCCGCGCCCGGAGGTCGGCGAGGAAGATCAGGTACGTGTCGTCCCCGTCGGCGAGCGCCT 472 consensus_4569#1 GAGNCAGCGCGTGCTNNGCCGNGANGANTGNGAA--TGGCGNNNCCG------------- 410 consensus_4569#2 ATGTTAGTGTCAGNAATNNNAGTTANACAGCAAAGTNATNGTTTTTTCTAANAA------ 91 * * * * consensus_4569#0 TGGACCGGACGAACGCCGCCCACCCCATCGCCGCCAGCGCCACGAACGTCGACACCGGCT 532 consensus_4569#1 ------------------------------------------------------------ consensus_4569#2 ------------------------------------------------------------ consensus_4569#0 TGGCGGCGCCGCCGCCATCGGCAGCCTCCTCCGCCGAGGCGAGCTCGTCGATGCGCCGCT 592 consensus_4569#1 ------------------------------------------------------------ consensus_4569#2 ------------------------------------------------------------ consensus_4569#0 TCAACGCGCGGATGGCGTCGGCGCCGAGGCGGAACGTCCGGCGAGCCAGCCGGAATCGCT 652 consensus_4569#1 ------------------------------------------------------------ consensus_4569#2 ------------------------------------------------------------ consensus_4569#0 GGCTGAAGTCCTGCTGATCCCCGCTCGCCTGCAAGCATCCATGGCGGGTGGTGGTGATCT 712 consensus_4569#1 ------------------------------------------------------------ consensus_4569#2 ------------------------------------------------------------ consensus_4569#0 CGTCAGTAAATTTGCATTCACGGCGAGCGAGAGAGAGATCATGACGCGTGCATGCCATTG 772 consensus_4569#1 ------------------------------------------------------------ consensus_4569#2 ------------------------------------------------------------ consensus_4569#0 CTTGCTCCGCCACGCCACCGCGGCGAGCTCCGCATGCGCTTAACATTGGGGGGAGAAGGA 832 consensus_4569#1 ------------------------------------------------------------ consensus_4569#2 ------------------------------------------------------------ consensus_4569#0 AACCATGGTTGGATGGCGTACCAAGCAAAGGTTGACGACACATACACACTTCGAAGAGGC 892 consensus_4569#1 ------------------------------------------------------------ consensus_4569#2 ------------------------------------------------------------ consensus_4569#0 TACACTACACTACAGTACATGCTTCATGCATGATGGAAGCTTCGATTTTTGTTTATTTAT 952 consensus_4569#1 ------------------------------------------------------------ consensus_4569#2 ------------------------------------------------------------ consensus_4569#0 TTGAACTACCAGAAAGATTTTTTGGGCTGTTTTTTTTATTTGGTTGAATTTTATTCAGAA 1012 consensus_4569#1 ------------------------------------------------------------ consensus_4569#2 ------------------------------------------------------------ consensus_4569#0 TTCAAATACATTACA 1027 consensus_4569#1 --------------- consensus_4569#2 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||