These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4571#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1288 fasta sequence [GGCAGAAGCTTTTTTTTTTTCCTTAGGCAGAAGACAGAGGCAGAGGTCGTCAGTCAGTGTAGATTAGGTATACTTCGTACTGACCACCAGCTTCGTGCGCATGCATGAATGGCGAAGTGGTGGTGTAACTGACGATCGATTTCGGGAGGTAACCGGCGAGTAAGCTAGGAGAGGATGCACAGCCGCAGGACCCCCCCACCATCCATGCACAGTGGCCTTCACAAGCTCGCAGAGCTCAGCTCCGGCTGCCTGCACTGCACTGGCTGCAACATACGGTGTAGGTCGCCCAGATAGTAGCAAATATTCTCTCTACTCGAGTCTCGTCATCTCTTATCTTCAGAGTTCGCACTCTTCAAGAATACACCGGGCAACTCGCCGAAGAAGAAGCTTCAGCGGCAGAAGAAGAATCACCCATCGAGAGTTTTCCCCTCCCAAGGAAGATCAGGGATCTCTTCTTGAGATAAAAACAGTCATGTCTGAGACCATAGATTTAACCGGAGATAGATGCATTCTTAAGACAGTGATCAGGAGAGCAAAGGATGATGCTACTGCACCTTCAGATAGTCTTCCCATTGTTGATGTTCACTATGAAGGAACACTTGCTGAGAACGGGGAAGTGTTTGACACTACTCATGAAGACAACTCCGTCTTCTCATTTGAAATTGGAGAGGGAACTGTCATCAAGGCATGGGATATCGCCGTGAAAACAATGAAGGTTGGAGAGGTTGCAAAGATCACATGCAAGCCAGAATATGCTTATGGAGCTGCAGGTTCACCTCCAGAGATACCGCCAGATGCAACTCTCACTTTTGAGGTTGAGTTAATCGCATGCAGGCCGAGGAAAGGTTCTAGTGTGGAAAGTGTATCTGAAGAGAAAGCTAGGCTTGAGGAGTTGAAGAAGCAGAGGGAGATCGCTGCTGCAGCCAAAGAGGAAGAGAAGAGGAAAAGGGAGGAAGCAAAAGCAGCTGCAGCTGCGCGTGTACAAGCAAAACTTGAAGCAAAAAAGGGCAAGGGAAAGAAGGCCAAATAGATAATATCACACTAAGACAAGTTATGAGGTAGGAGTATATAAAAAGTATAAAGTTATGTATGAACCTGGTAACTGTATGCTGTTGAAATTCCACACAAACACAAACTTTGTTTGGTTGTAGTTAAAATGGGCCATGAATATGCATATAAACAAAAAGAAGTCGTGTCACTTTGATCACAGTGTGCACCAGCCCATTTGTGCAAGAGTTTAATGTTTTTAGGGCATGTTCAGAGATGCAATTGGTAAAATATATGAAGT] [+] EMBL AK105246 [GGCAGAAGCTTTTTTTTTTTCCTTAGGCAGAAGACAGAGGCAGAGGTCGTCAGTCAGTGTAGATTAGGTATACTTCGTACTGACCACCAGCTTCGTGCGCATGCATGAATGGCGAAGTGGTGGTGTAACTGACGATCGATTTCGGGAGGTAACCGGCGAGTAAGCTAGGAGAGGATGCACAGCCGCAGGACCCCCCCACCATCCATGCACAGTGGCCTTCACAAGCTCGCAGAGCTCAGCTCCGGCTGCCTGCACTGCACTGGCTGCAACATACGGTGTAGGTCGCCCAGATAGTAGCAAATATTCTCTCTACTCGAGTCTCGTCATCTCTTATCTTCAGAGTTCGCACTCTTCAAGAATACACCGGGCAACTCGCCGAAGAAGAAGCTTCAGCGGCAGAAGAAGAATCACCCATCGAGAGTTTTCCCCTCCCAAGGAAGATCAGGGATCTCTTCTTGAGATAAAAACAGTCATGTCTGAGACCATAGATTTAACCGGAGATAGATGCATTCTTAAGACAGTGATCAGGAGAGCAAAGGATGATGCTACTGCACCTTCAGATAGTCTTCCCATTGTTGATGTTCACTATGAAGGAACACTTGCTGAGAACGGGGAAGTGTTTGACACTACTCATGAAGACAACTCCGTCTTCTCATTTGAAATTGGAGAGGGAACTGTCATCAAGGCATGGGATATCGCCGTGAAAACAATGAAGGTTGGAGAGGTTGCAAAGATCACATGCAAGCCAGAATATGCTTATGGAGCTGCAGGTTCACCTCCAGAGATACCGCCAGATGCAACTCTCACTTTTGAGGTTGAGTTAATCGCATGCAGGCCGAGGAAAGGTTCTAGTGTGGAAAGTGTATCTGAAGAGAAAGCTAGGCTTGAGGAGTTGAAGAAGCAGAGGGAGATCGCTGCTGCAGCCAAAGAGGAAGAGAAGAGGAAAAGGGAGGAAGCAAAAGCAGCTGCAGCTGCGCGTGTACAAGCAAAACTTGAAGCAAAAAAGGGCAAGGGAAAGAAGGCCAAATAGATAATATCACACTAAGACAAGTTATGAGGTAGGAGTATATAAAAAGTATAAAGTTATGTATGAACCTGGTAACTGTATGCTGTTGAAATTCCACACAAACACAAACTTTGTTTGGTTGTAGTTAAAATGGGCCATGAATATGCATATAAACAAAAAGAAGTCGTGTCACTTTGATCACAGTGTGCACCAGCCCATTTGTGCAAGAGTTTAATGTTTTTAGGGCATGTTCAGAGATGCAATTGGTAAAATATATGAAGT] consensusID : consensus_4571#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 802 fasta sequence [CTCGTTTCAGTACTTGATGGAGCATATTATTCAGGAAGAATATTCAGGGAACATGATTGTCCATTTTTCATGTTTTGCTCGTTTGCTGGGATAATCTCTTAGGCATTCAATTTGAAGGAATCAGATATCAGCGCACCATGTTTTTTCATTAGATCCTAATAGTTTTGTTTTTTTGAGAAAATGCATTCTTGGATCAAATAGAAGAAATAAAATTTTTAAAAAAATGCATAAAAGCAGGAAGAAATTGGTTGTGGTTTGCTTCAACTATATGCTAGTGGGTTCTATGCTGATTTTCAGGATCTCTTCTTGAGATAAAAACAGTCATGTCTGAGACCATAGATTTAACCGGAGATAGATGCATTCTTAAGACAGTGATCAGGAGGGCAAAGGATGATGCTACTGCACCTTCAGATAGTCTTCCCATTGTTGATGTTCACTATGAAGGAACACTTGCTGAGAACGGGGAAGTGTTTGACACTACTCATGAAGACAACTCCGTCTTCTCATTTGAAATTGGAGAGGGAACTGTCATCAAGGCATGGGATATCGCCGTGAAAACAATGAAGGTAAATGGATGAACTGTTCGCTAGTTCATTATGATCAATAGCCCAAACAGTTCTTTTGCTGATAATACTGTTGTTAAATTGGACACCTGANGTGGGAAGAGGTTGCAAAGATCACATGCAAGCCAGAATATGCCTTATGGAGCCTGGCAGGNTCACCTNCAGAGATACCGGCAGATGCAACTCTCACTTTTTGGGGGTTGAGNTAATCGCATGCAGGCCGGGGGAAGGGTTCTAGN] [+] EMBL CA764584 [CTCGTTTCAGTACTTGATGGAGCATATTATTCAGGAAGAATATTCAGGGAACATGATTGTCCATTTTTCATGTTTTGCTCGTTTGCTGGGATAATCTCTTAGGCATTCAATTTGAAGGAATCAGATATCAGCGCACCATGTTTTTTCATTAGATCCTAATAGTTTTGTTTTTTTGAGAAAATGCATTCTTGGATCAAATAGAAGAAATAAAATTTTTAAAAAAATGCATAAAAGCAGGAAGAAATTGGTTGTGGTTTGCTTCAACTATATGCTAGTGGGTTCTATGCTGATTTTCAGGATCTCTTCTTGAGATAAAAACAGTCATGTCTGAGACCATAGATTTAACCGGAGATAGATGCATTCTTAAGACAGTGATCAGGAGGGCAAAGGATGATGCTACTGCACCTTCAGATAGTCTTCCCATTGTTGATGTTCACTATGAAGGAACACTTGCTGAGAACGGGGAAGTGTTTGACACTACTCATGAAGACAACTCCGTCTTCTCATTTGAAATTGGAGAGGGAACTGTCATCAAGGCATGGGATATCGCCGTGAAAACAATGAAGGTAAATGGATGAACTGTTCGCTAGTTCATTATGATCAATAGCCCAAACAGTTCTTTTGCTGATAATACTGTTGTTAAATTGGACACCTGANGTGGGAAGAGGTTGCAAAGATCACATGCAAGCCAGAATATGCCTTATGGAGCCTGGCAGGNTCACCTNCAGAGATACCGGCAGATGCAACTCTCACTTTTTGGGGGTTGAGNTAATCGCATGCAGGCCGGGGGAAGGGTTCTAGN] consensusID : consensus_4571#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 213 fasta sequence [AGTATATAAAAAGATAAAGTTATGTATGAACCTGGTAACTGTATGCTGTTGAAATTCCACACAAACACAAACTTTGTTTGGTTGTAGTTAAAATGGGCCATGAATATGCATATAAACAAAAAGAAGTCGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF302011 [AGTATATAAAAAGATAAAGTTATGTATGAACCTGGTAACTGTATGCTGTTGAAATTCCACACAAACACAAACTTTGTTTGGTTGTAGTTAAAATGGGCCATGAATATGCATATAAACAAAAAGAAGTCGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4571#0 GGCAGAAGCTTTTTTTTTTTCCTTAGGCAGAAGACAGAGGCAGAGGTCGTCAGTCAGTGT 60 consensus_4571#2 ------------------------------------------------------------ consensus_4571#1 ------------------------------------------------------------ consensus_4571#0 AGATTAGGTATACTTCGTACTGACCACCAGCTTCGTGCGCATGCATGAATGGCGAAGTGG 120 consensus_4571#2 ------------------------------------------------------------ consensus_4571#1 ------------------------------------------------------------ consensus_4571#0 TGGTGTAACTGACGATCGATTTCGGGAGGTAACCGGCGAGTAAGCTAGGAGAGGATGCAC 180 consensus_4571#2 ------------------------------------------------------------ consensus_4571#1 ------------------------------------------------------------ consensus_4571#0 AGCCGCAGGACCCCCCCACCATCCATGCACAGTGGCCTTCACAAGCTCGCAGAGCTCAGC 240 consensus_4571#2 ------------------------------------------------------------ consensus_4571#1 ------------------------------------------------------------ consensus_4571#0 TCCGGCTGCCTGCACTGCACTGGCTGCAACATACGGTGTAGGTCGCCCAGATAGTAGCAA 300 consensus_4571#2 ------------------------------------------------------------ consensus_4571#1 ------------------------------------------------------------ consensus_4571#0 ATATTCTCTCTACTCGAGTCTCGTCATCTCTTATCTTCAGAGTTCGCACTCTTCAAGAAT 360 consensus_4571#2 ------------------------------------------------------------ consensus_4571#1 ------------------------------------------------------------ consensus_4571#0 ACACCGGGCAACTCGCCGAAGAAGAAGCTTCAGCGGCAGAAGAAGAATCACCCATCGAGA 420 consensus_4571#2 ------------------------------------------------------------ consensus_4571#1 ------------------------------------------------------------ consensus_4571#0 GTTTTCCCCTCCCAAGGAAGATCAGGGATCTCTTCTTGAGATAAAAACAGTCATGTCTGA 480 consensus_4571#2 ------------------------------------------------------------ consensus_4571#1 ------------------------------------------------------------ consensus_4571#0 GACCATAGATTTAACCGGAGATAGATGCATTCTTAAGACAGTGATCAGGAGAGCAAAGGA 540 consensus_4571#2 ------------------------------------------------------------ consensus_4571#1 -CTCGTTTCAGTACTTGATGGAGCATATTATTCAGGAAGAATATTCAGGGAACATGATTG 59 consensus_4571#0 TGATGCTACTGCACCTTCAGATAGTCTTCCCATTGTTGATGTTCACTATGAAGGAACACT 600 consensus_4571#2 ------------------------------------------------------------ consensus_4571#1 TCCATTTTTCATGTTTTGCTCGTTTGCTGGGATAATCTCTTAGGCATTCAATTTGAAGGA 119 consensus_4571#0 TGCTGAGAACGGGGAAGTGTTTGACACTACTCATGAAGACAACTCCGTCTTCTCATTTGA 660 consensus_4571#2 ------------------------------------------------------------ consensus_4571#1 ATCAGATATCAGCGCACCATGTTTTTTCATTAGATCCTAATAGTTTTGTTTTTTTGAGAA 179 consensus_4571#0 AATTGGAGAGGGAACTGTCATCAAGGCATGGGATATCGCCGTGAAAACAATGAAGGTTGG 720 consensus_4571#2 ------------------------------------------------------------ consensus_4571#1 AATGCATTCTTGGATCAAATAGAAGAAATAAAATTTTTAAAAAAATGCATAAAAGCAGGA 239 consensus_4571#0 AGAGGTTGCAAAGATCACATGCAAGCCAGAATATGCTTATGGAGCTGCAGGTTCACCTCC 780 consensus_4571#2 ------------------------------------------------------------ consensus_4571#1 AGAAATTGGTTGTGGTTTGCTTCAACTATA----TGCTAGTGGGTTCTATGCTGATTTTC 295 consensus_4571#0 AGAGATACCGCCAGATGCAACTCTCACTTTTGAGGTTGAGTTAATCGCATGCAGGCCGAG 840 consensus_4571#2 ------------------------------------------------------------ consensus_4571#1 AGGATCTCTTCTTGAGATAAAAACAGTCATGTCTGAGACCATAGATTTAACCGGAGATAG 355 consensus_4571#0 GAAAGGTTCTAGTGTGGAAAGTGTATCTGAAGAGAAAGCTAGGCTTGAGGAGTTGAAGAA 900 consensus_4571#2 ------------------------------------------------------------ consensus_4571#1 ATGCATTCTTAAGACAGTGATCAGGAGGGCAAAGGATGATGCTACTGCACCTTCAGATAG 415 consensus_4571#0 GCAGAGGGAGATCGCTGCTGCAGCCAAAGAGGAAGAGAAGAGGAAAAGGGAGGAAGCAAA 960 consensus_4571#2 ------------------------------------------------------------ consensus_4571#1 TCTTCCCATTGTTGATGTTCACTATGAAGGAACACTTGCTGAGAACGGGGAAGTGTTTGA 475 consensus_4571#0 AGCAGCTGCAGCTGCGCGTGTACAAGCAAAACTTGAAGCAAAAAAGGGCAAGGGAAAGAA 1020 consensus_4571#2 ------------------------------------------------------------ consensus_4571#1 CACTACTCATGAAGACAACTCCGTCTTCTCATTTGAAATTGGAGAGGGAACTGTCATCAA 535 consensus_4571#0 GGCCAAATAGATAATATCACACTAAGACAAGTTATGAGGTAGGAGTATATAAAAAGTATA 1080 consensus_4571#2 -------------------------------------------AGTATATAAAAAG-ATA 16 consensus_4571#1 GGCATGGGATATCGCCGTGAAAACAATGAAGGTAAATGGATGAACTGT-TCGCTAGTTCA 594 * * * * ** * consensus_4571#0 AAGTTATGTATGAACCTGGTAACTGTAT-GCTGTTGAAATTCCACACAAACACAA-ACTT 1138 consensus_4571#2 AAGTTATGTATGAACCTGGTAACTGTAT-GCTGTTGAAATTCCACACAAACACAA-ACTT 74 consensus_4571#1 TTATGATCAATAGCCCAAACAGTTCTTTTGCTGATAATACTGTTGTTAAATTGGACACCT 654 * ** ** ** * * * * **** * * * * *** * ** * consensus_4571#0 TGTTTGGTTGTAGTTAAAATGGGCCATGAATATGC--ATATAAACAAAAAGAAGTCGTGT 1196 consensus_4571#2 TGTTTGGTTGTAGTTAAAATGGGCCATGAATATGC--ATATAAACAAAAAGAAGTCGTGT 132 consensus_4571#1 GANGTGGGAAGAGGTTGCAAAGATCACATGCAAGCCAGAATATGCCTTATGGAGCC-TGG 713 *** ** * * * ** * ** *** * * * ** * ** consensus_4571#0 CACTTTGATCACAGTGTGCACCAGCCCATTTGTGCAAGAGTTTAATGTTTTTAGGGCATG 1256 consensus_4571#2 CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 192 consensus_4571#1 CAGGNTCACCTNCAGAGATACCGGCAGATGCAACTCTCACTTTTTGGGGGTTGAGNTAAT 773 ** * * * * * consensus_4571#0 TTCAGAGATGCAATTGGTAAAATATATGAAGT 1288 consensus_4571#2 AAAAAAAAAAAAAAAAAAAAA----------- 213 consensus_4571#1 CGCATGCAGGCCGGGGGAAGGGTTCTAGN--- 802 * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||