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Oryza sativa
cluster # 4574 cluster # 4574       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4574#0 length = 1370 sequences # 2  
consensus_4574#1 length = 533 sequences # 1  

consensusID : consensus_4574#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1370
fasta sequence
                              [CGGCGACGGCGGAGGCGACGAGGCCGAAGCCGCCGGCGGTCTGGCCGGCGATGGAAGGGGGGGGGGGGACCCGCCGGCCGTAGGCGCGATGGGTCGGCCGCCCAGATCCTCTCCACCGTGAAGATCTCCCCATCTTATCCTCGGCGATCTGCGTTTCCCTTGCTCGGAAAGGCGACCCAGAATCAGTAACTACGCATAAGGAGAATACAAGCACCACGGCTGATCACAAAAGAAGCTGGACCACCTGCAGATGAAGCTATATTCAGAAGTGATTCAGTGAAATCCGCAGTTCTAAGCTCACCACTAGTTGAGTTTAGCACGATTTATTCAGCAACAAATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAGGGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAACAGATCCAGTCAGGGATTGGAAGAGTTCAAGAACGAGATGAAAGTAAGAGGCTAATATTTGGATGGAAATTGCGATACAAGATTATTCAGGGAATTGGGAGAGGATTATTGTACCTTCATCAGGATTCCAGGCTCAAAATTATTCACAGGGATCTCAAAGCGAGCAATATTCTGCTTGATGATGATTTCAACCCCAAGATATCTGACTTTGGTATGGCTAGAATATTTGGTGAACACCAACTTCAAGCCCTTACCCACCGAATTGTTGGAACCTATGGCTACATCTCTCCAGAGTACGCAATGGAGGGCAAATTCTCTGAGAAATCAGACATCTTCAGTTTCGGCGTGTTGATCCTAGAGATTGTGAGCGGACGAAGGAACAGCTCATTTGTTGATGAAGAATGGTCAATGAATCTCTTGGGTTACGCGTGGACACTGTGGAAGGAAGGCAGTGTCTCGGAGCTGATCGATCCACTCATGGGCACCATATGCTCTTACGATGAAGTATGCAGATGCATCCAGGTTGGTCTTCTGTGCGTGCAGGAATTACCAGGTGATAGGCCAAGCATGCCCCTGGTGCTCAGGATGCTCAGTGGGGATGTTACACTTCCTGCTCCGAAGCAAGCTGCATTTTTCGTCGGAAGGGTTCCTCTGGATGATAACAATACTGGATCGGGGAATCAGTTGACGTATACTCAATTGCAAGGCAGATAGCTCCTTGTCAGTGCCTCTGAATCTCTTGTTCAACTTGCC-AACCTGGATTACTGAAGTTGGTGTCTCTCATTTTCCCTGTTTGTTTGTTGTTAACCTAGTAATAAACCTGTTATTATTTTTGTATATAGGTTTGCTTGTAATATGTGGAACTGTAAGCGTATTTGGGAATTGGAATGCCGTTTGTTTATACATCTGGGTATCAGGGTATGCAACACCAGGAAA]

[+] EMBL AK071656             [CGGCGACGGCGGAGGCGACGAGGCCGAAGCCGCCGGCGGTCTGGCCGGCGATGGAAGGGGGGGGGGGGACCCGCCGGCCGTAGGCGCGATGGGTCGGCCGCCCAGATCCTCTCCACCGTGAAGATCTCCCCATCTTATCCTCGGCGATCTGCGTTTCCCTTGCTCGGAAAGGCGACCCAGAATCAGTAACTACGCATAAGGAGAATACAAGCACCACGGCTGATCACAAAAGAAGCTGGACCACCTGCAGATGAAGCTATATTCAGAAGTGATTCAGTGAAATCCGCAGTTCTAAGCTCACCACTAGTTGAGTTTAGCACGATTTATTCAGCAACAAATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAGGGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAACAGATCCAGTCAGGGATTGGAAGAGTTCAAGAACGAGATGAAAGTAAGAGGCTAATATTTGGATGGAAATTGCGATACAAGATTATTCAGGGAATTGGGAGAGGATTATTGTACCTTCATCAGGATTCCAGGCTCAAAATTATTCACAGGGATCTCAAAGCGAGCAATATTCTGCTTGATGATGATTTCAACCCCAAGATATCTGACTTTGGTATGGCTAGAATATTTGGTGAACACCAACTTCAAGCCCTTACCCACCGAATTGTTGGAACCTATGGCTACATCTCTCCAGAGTACGCAATGGAGGGCAAATTCTCTGAGAAATCAGACATCTTCAGTTTCGGCGTGTTGATCCTAGAGATTGTGAGCGGACGAAGGAACAGCTCATTTGTTGATGAAGAATGGTCAATGAATCTCTTGGGTTACGCGTGGACACTGTGGAAGGAAGGCAGTGTCTCGGAGCTGATCGATCCACTCATGGGCACCATATGCTCTTACGATGAAGTATGCAGATGCATCCAGGTTGGTCTTCTGTGCGTGCAGGAATTACCAGGTGATAGGCCAAGCATGCCCCTGGTGCTCAGGATGCTCAGTGGGGATGTTACACTTCCTGCTCCGAAGCAAGCTGCATTTTTCGTCGGAAGGGTTCCTCTGGATGATAACAATACTGGATCGGGGAATCAGTTGACGTATACTCAATTGCAAGGCAGATAGCTCCTTGTCAGTGCCTCTGAATCTCTTGTTCAACTTGCC AACCTGGATTACTGAAGTTGGTGTCTCTCATTTTCCCTGTTTGTTTGTTGTTAACCTAGTAATAAACCTGTTATTATTTTTGTATATAGGTTTGCTTGTAATATGTGGAACTGTAAGCGTATTTGGGAATTGGAATGCCGTTTGTTTATACATCTGGGTATCAGGGTATGCAACACCAGGAAA]
[+] EMBL BI813089             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTGCCAAACCTGGATTACTGAA TTGGTGTCTCTCATTTTCCCTGTTTGTTTGTTGTTAACCTAGTAATAAACCTGTTATTATTTTTGTATATAGGTTTGCTTGTAATATGTGGAACTGTAAGCGTATTTGGGCACTGGAATGCCGTTTGTTTATAaaaa                             ]


>consensus_4574#0 CGGCGACGGCGGAGGCGACGAGGCCGAAGCCGCCGGCGGTCTGGCCGGCGATGGAAGGGG GGGGGGGGACCCGCCGGCCGTAGGCGCGATGGGTCGGCCGCCCAGATCCTCTCCACCGTG AAGATCTCCCCATCTTATCCTCGGCGATCTGCGTTTCCCTTGCTCGGAAAGGCGACCCAG AATCAGTAACTACGCATAAGGAGAATACAAGCACCACGGCTGATCACAAAAGAAGCTGGA CCACCTGCAGATGAAGCTATATTCAGAAGTGATTCAGTGAAATCCGCAGTTCTAAGCTCA CCACTAGTTGAGTTTAGCACGATTTATTCAGCAACAAATAATTTTAGCAACAAGCTTGGT GGAGGCGGATTTGGTTTTGTTTACAAGGGGGTACTACCTGATGGCCAGGAGATTGCTGTC AAGAGGCTGTCAAACAGATCCAGTCAGGGATTGGAAGAGTTCAAGAACGAGATGAAAGTA AGAGGCTAATATTTGGATGGAAATTGCGATACAAGATTATTCAGGGAATTGGGAGAGGAT TATTGTACCTTCATCAGGATTCCAGGCTCAAAATTATTCACAGGGATCTCAAAGCGAGCA ATATTCTGCTTGATGATGATTTCAACCCCAAGATATCTGACTTTGGTATGGCTAGAATAT TTGGTGAACACCAACTTCAAGCCCTTACCCACCGAATTGTTGGAACCTATGGCTACATCT CTCCAGAGTACGCAATGGAGGGCAAATTCTCTGAGAAATCAGACATCTTCAGTTTCGGCG TGTTGATCCTAGAGATTGTGAGCGGACGAAGGAACAGCTCATTTGTTGATGAAGAATGGT CAATGAATCTCTTGGGTTACGCGTGGACACTGTGGAAGGAAGGCAGTGTCTCGGAGCTGA TCGATCCACTCATGGGCACCATATGCTCTTACGATGAAGTATGCAGATGCATCCAGGTTG GTCTTCTGTGCGTGCAGGAATTACCAGGTGATAGGCCAAGCATGCCCCTGGTGCTCAGGA TGCTCAGTGGGGATGTTACACTTCCTGCTCCGAAGCAAGCTGCATTTTTCGTCGGAAGGG TTCCTCTGGATGATAACAATACTGGATCGGGGAATCAGTTGACGTATACTCAATTGCAAG GCAGATAGCTCCTTGTCAGTGCCTCTGAATCTCTTGTTCAACTTGCCAACCTGGATTACT GAAGTTGGTGTCTCTCATTTTCCCTGTTTGTTTGTTGTTAACCTAGTAATAAACCTGTTA TTATTTTTGTATATAGGTTTGCTTGTAATATGTGGAACTGTAAGCGTATTTGGGAATTGG AATGCCGTTTGTTTATACATCTGGGTATCAGGGTATGCAACACCAGGAAA



consensusID : consensus_4574#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 533
fasta sequence
                              [AGTAACTACGCATAAGGAGAATACAAGCACCACGGCTGATCACAAAAGAAGCTGGACCACCTGCAGATGAAGCTATATTCAGAAGTGATTCAGTGAAATCCGCAGTTCTAAGCTCACCACTAGTTGAGTTTAGCACGATTTATTCAGCAACAAATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAGGGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAACAGATCCAGTCAGGGATTGGAAGAGTTCAAGAACGAGGTGATAGTTCTATCCAAACTGCAACACCGGAATTTGGTTAGGCTCTTTGGTTGTTGTGTTCATGGAGAAGAGAAGATGTTGCTGTATGAATACATGCCCAACAAGAGCCTTGACTCATTTATTTTTGATGAAAGTAAGAGGCTAATATTTGGATGGAAATTGCGATACAAGATTATTCAGGGAATTGGGAGAGGATTATTGTACCTTCATCAGGATTCCAGGCTCAAAATTATTCACAGGGATCTC]

[+] EMBL BP184664             [AGTAACTACGCATAAGGAGAATACAAGCACCACGGCTGATCACAAAAGAAGCTGGACCACCTGCAGATGAAGCTATATTCAGAAGTGATTCAGTGAAATCCGCAGTTCTAAGCTCACCACTAGTTGAGTTTAGCACGATTTATTCAGCAACAAATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAGGGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAACAGATCCAGTCAGGGATTGGAAGAGTTCAAGAACGAGGTGATAGTTCTATCCAAACTGCAACACCGGAATTTGGTTAGGCTCTTTGGTTGTTGTGTTCATGGAGAAGAGAAGATGTTGCTGTATGAATACATGCCCAACAAGAGCCTTGACTCATTTATTTTTGATGAAAGTAAGAGGCTAATATTTGGATGGAAATTGCGATACAAGATTATTCAGGGAATTGGGAGAGGATTATTGTACCTTCATCAGGATTCCAGGCTCAAAATTATTCACAGGGATCTC]


>consensus_4574#1 AGTAACTACGCATAAGGAGAATACAAGCACCACGGCTGATCACAAAAGAAGCTGGACCAC CTGCAGATGAAGCTATATTCAGAAGTGATTCAGTGAAATCCGCAGTTCTAAGCTCACCAC TAGTTGAGTTTAGCACGATTTATTCAGCAACAAATAATTTTAGCAACAAGCTTGGTGGAG GCGGATTTGGTTTTGTTTACAAGGGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGA GGCTGTCAAACAGATCCAGTCAGGGATTGGAAGAGTTCAAGAACGAGGTGATAGTTCTAT CCAAACTGCAACACCGGAATTTGGTTAGGCTCTTTGGTTGTTGTGTTCATGGAGAAGAGA AGATGTTGCTGTATGAATACATGCCCAACAAGAGCCTTGACTCATTTATTTTTGATGAAA GTAAGAGGCTAATATTTGGATGGAAATTGCGATACAAGATTATTCAGGGAATTGGGAGAG GATTATTGTACCTTCATCAGGATTCCAGGCTCAAAATTATTCACAGGGATCTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4574#0      CGGCGACGGCGGAGGCGACGAGGCCGAAGCCGCCGGCGGTCTGGCCGGCGATGGAAGGGG 60
consensus_4574#1      ------------------------------------------------------------
                                                                                  

consensus_4574#0      GGGGGGGGACCCGCCGGCCGTAGGCGCGATGGGTCGGCCGCCCAGATCCTCTCCACCGTG 120
consensus_4574#1      ------------------------------------------------------------
                                                                                  

consensus_4574#0      AAGATCTCCCCATCTTATCCTCGGCGATCTGCGTTTCCCTTGCTCGGAAAGGCGACCCAG 180
consensus_4574#1      ------------------------------------------------------------
                                                                                  

consensus_4574#0      AATCAGTAACTACGCATAAGGAGAATACAAGCACCACGGCTGATCACAAAAGAAGCTGGA 240
consensus_4574#1      ----AGTAACTACGCATAAGGAGAATACAAGCACCACGGCTGATCACAAAAGAAGCTGGA 56
                          ********************************************************

consensus_4574#0      CCACCTGCAGATGAAGCTATATTCAGAAGTGATTCAGTGAAATCCGCAGTTCTAAGCTCA 300
consensus_4574#1      CCACCTGCAGATGAAGCTATATTCAGAAGTGATTCAGTGAAATCCGCAGTTCTAAGCTCA 116
                      ************************************************************

consensus_4574#0      CCACTAGTTGAGTTTAGCACGATTTATTCAGCAACAAATAATTTTAGCAACAAGCTTGGT 360
consensus_4574#1      CCACTAGTTGAGTTTAGCACGATTTATTCAGCAACAAATAATTTTAGCAACAAGCTTGGT 176
                      ************************************************************

consensus_4574#0      GGAGGCGGATTTGGTTTTGTTTACAAGGGGGTACTACCTGATGGCCAGGAGATTGCTGTC 420
consensus_4574#1      GGAGGCGGATTTGGTTTTGTTTACAAGGGGGTACTACCTGATGGCCAGGAGATTGCTGTC 236
                      ************************************************************

consensus_4574#0      AAGAGGCTGTCAAACAGATCCAGTCAGGGATTGGAAGAGTTCAAGAACGAGATGAAAGTA 480
consensus_4574#1      AAGAGGCTGTCAAACAGATCCAGTCAGGGATTGGAAGAGTTCAAGAACGAGGTGA----- 291
                      *************************************************** ***     

consensus_4574#0      AGAGGCTAATATTTGGATGGAAATTGCGATACAAGATTATTCAGGGAATTGGGAGAGGAT 540
consensus_4574#1      ---------TAGTTCTATCCAAACTGCAACACC-----------GGAATTTGGTTAGGCT 331
                               ** **  **  *** *** * **            ****** **  *** *

consensus_4574#0      TATTGTACCTTCATCAGGATTCCAGGCTCAAAATTATTCACAGGGATCTCAAAGCGAGCA 600
consensus_4574#1      CTTTGGTTGTT-----GTGTTCATGGAGAAGAG---------AAGATGTTGCTGTATG-A 376
                        ***    **     *  ***  **   * *            *** *    *   * *

consensus_4574#0      ATATTCTGCTTGATGATGATTTCAACCCCAAGATATCTGACTTTGGTATGGCTAGAATAT 660
consensus_4574#1      ATACA-TGCCCAACAAGAGCCTTGACTCATTTATTTTTGATGAAAGTAAGAGGCTAATAT 435
                      ***   ***   *  *     *  ** *    ** * ***     *** *     *****

consensus_4574#0      TTGGTGAACACCAACTTCAAGCCCTTACCCACCGAATTGTTGGAACCTATGGCTACATCT 720
consensus_4574#1      TTGGATGGAAATTGCGATACAAGATTATTCAGGGAATTGGGAGAGGATTATTGTACCTTC 495
                      ****     *    *   *     ***  **  ******   **   *     *** *  

consensus_4574#0      CTCCAGAGTACGCAATGGAGGGCAAATTCTCTGAGAAATCAGACATCTTCAGTTTCGGCG 780
consensus_4574#1      ATCAGGATTCCAGGCTCAAAATT--ATTCACAGGGATCTC-------------------- 533
                       **  ** * *    *  *      **** * * **  **                    

consensus_4574#0      TGTTGATCCTAGAGATTGTGAGCGGACGAAGGAACAGCTCATTTGTTGATGAAGAATGGT 840
consensus_4574#1      ------------------------------------------------------------
                                                                                  

consensus_4574#0      CAATGAATCTCTTGGGTTACGCGTGGACACTGTGGAAGGAAGGCAGTGTCTCGGAGCTGA 900
consensus_4574#1      ------------------------------------------------------------
                                                                                  

consensus_4574#0      TCGATCCACTCATGGGCACCATATGCTCTTACGATGAAGTATGCAGATGCATCCAGGTTG 960
consensus_4574#1      ------------------------------------------------------------
                                                                                  

consensus_4574#0      GTCTTCTGTGCGTGCAGGAATTACCAGGTGATAGGCCAAGCATGCCCCTGGTGCTCAGGA 1020
consensus_4574#1      ------------------------------------------------------------
                                                                                  

consensus_4574#0      TGCTCAGTGGGGATGTTACACTTCCTGCTCCGAAGCAAGCTGCATTTTTCGTCGGAAGGG 1080
consensus_4574#1      ------------------------------------------------------------
                                                                                  

consensus_4574#0      TTCCTCTGGATGATAACAATACTGGATCGGGGAATCAGTTGACGTATACTCAATTGCAAG 1140
consensus_4574#1      ------------------------------------------------------------
                                                                                  

consensus_4574#0      GCAGATAGCTCCTTGTCAGTGCCTCTGAATCTCTTGTTCAACTTGCCAACCTGGATTACT 1200
consensus_4574#1      ------------------------------------------------------------
                                                                                  

consensus_4574#0      GAAGTTGGTGTCTCTCATTTTCCCTGTTTGTTTGTTGTTAACCTAGTAATAAACCTGTTA 1260
consensus_4574#1      ------------------------------------------------------------
                                                                                  

consensus_4574#0      TTATTTTTGTATATAGGTTTGCTTGTAATATGTGGAACTGTAAGCGTATTTGGGAATTGG 1320
consensus_4574#1      ------------------------------------------------------------
                                                                                  

consensus_4574#0      AATGCCGTTTGTTTATACATCTGGGTATCAGGGTATGCAACACCAGGAAA 1370
consensus_4574#1      --------------------------------------------------
                                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)