These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4574#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1370 fasta sequence [CGGCGACGGCGGAGGCGACGAGGCCGAAGCCGCCGGCGGTCTGGCCGGCGATGGAAGGGGGGGGGGGGACCCGCCGGCCGTAGGCGCGATGGGTCGGCCGCCCAGATCCTCTCCACCGTGAAGATCTCCCCATCTTATCCTCGGCGATCTGCGTTTCCCTTGCTCGGAAAGGCGACCCAGAATCAGTAACTACGCATAAGGAGAATACAAGCACCACGGCTGATCACAAAAGAAGCTGGACCACCTGCAGATGAAGCTATATTCAGAAGTGATTCAGTGAAATCCGCAGTTCTAAGCTCACCACTAGTTGAGTTTAGCACGATTTATTCAGCAACAAATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAGGGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAACAGATCCAGTCAGGGATTGGAAGAGTTCAAGAACGAGATGAAAGTAAGAGGCTAATATTTGGATGGAAATTGCGATACAAGATTATTCAGGGAATTGGGAGAGGATTATTGTACCTTCATCAGGATTCCAGGCTCAAAATTATTCACAGGGATCTCAAAGCGAGCAATATTCTGCTTGATGATGATTTCAACCCCAAGATATCTGACTTTGGTATGGCTAGAATATTTGGTGAACACCAACTTCAAGCCCTTACCCACCGAATTGTTGGAACCTATGGCTACATCTCTCCAGAGTACGCAATGGAGGGCAAATTCTCTGAGAAATCAGACATCTTCAGTTTCGGCGTGTTGATCCTAGAGATTGTGAGCGGACGAAGGAACAGCTCATTTGTTGATGAAGAATGGTCAATGAATCTCTTGGGTTACGCGTGGACACTGTGGAAGGAAGGCAGTGTCTCGGAGCTGATCGATCCACTCATGGGCACCATATGCTCTTACGATGAAGTATGCAGATGCATCCAGGTTGGTCTTCTGTGCGTGCAGGAATTACCAGGTGATAGGCCAAGCATGCCCCTGGTGCTCAGGATGCTCAGTGGGGATGTTACACTTCCTGCTCCGAAGCAAGCTGCATTTTTCGTCGGAAGGGTTCCTCTGGATGATAACAATACTGGATCGGGGAATCAGTTGACGTATACTCAATTGCAAGGCAGATAGCTCCTTGTCAGTGCCTCTGAATCTCTTGTTCAACTTGCC-AACCTGGATTACTGAAGTTGGTGTCTCTCATTTTCCCTGTTTGTTTGTTGTTAACCTAGTAATAAACCTGTTATTATTTTTGTATATAGGTTTGCTTGTAATATGTGGAACTGTAAGCGTATTTGGGAATTGGAATGCCGTTTGTTTATACATCTGGGTATCAGGGTATGCAACACCAGGAAA] [+] EMBL AK071656 [CGGCGACGGCGGAGGCGACGAGGCCGAAGCCGCCGGCGGTCTGGCCGGCGATGGAAGGGGGGGGGGGGACCCGCCGGCCGTAGGCGCGATGGGTCGGCCGCCCAGATCCTCTCCACCGTGAAGATCTCCCCATCTTATCCTCGGCGATCTGCGTTTCCCTTGCTCGGAAAGGCGACCCAGAATCAGTAACTACGCATAAGGAGAATACAAGCACCACGGCTGATCACAAAAGAAGCTGGACCACCTGCAGATGAAGCTATATTCAGAAGTGATTCAGTGAAATCCGCAGTTCTAAGCTCACCACTAGTTGAGTTTAGCACGATTTATTCAGCAACAAATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAGGGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAACAGATCCAGTCAGGGATTGGAAGAGTTCAAGAACGAGATGAAAGTAAGAGGCTAATATTTGGATGGAAATTGCGATACAAGATTATTCAGGGAATTGGGAGAGGATTATTGTACCTTCATCAGGATTCCAGGCTCAAAATTATTCACAGGGATCTCAAAGCGAGCAATATTCTGCTTGATGATGATTTCAACCCCAAGATATCTGACTTTGGTATGGCTAGAATATTTGGTGAACACCAACTTCAAGCCCTTACCCACCGAATTGTTGGAACCTATGGCTACATCTCTCCAGAGTACGCAATGGAGGGCAAATTCTCTGAGAAATCAGACATCTTCAGTTTCGGCGTGTTGATCCTAGAGATTGTGAGCGGACGAAGGAACAGCTCATTTGTTGATGAAGAATGGTCAATGAATCTCTTGGGTTACGCGTGGACACTGTGGAAGGAAGGCAGTGTCTCGGAGCTGATCGATCCACTCATGGGCACCATATGCTCTTACGATGAAGTATGCAGATGCATCCAGGTTGGTCTTCTGTGCGTGCAGGAATTACCAGGTGATAGGCCAAGCATGCCCCTGGTGCTCAGGATGCTCAGTGGGGATGTTACACTTCCTGCTCCGAAGCAAGCTGCATTTTTCGTCGGAAGGGTTCCTCTGGATGATAACAATACTGGATCGGGGAATCAGTTGACGTATACTCAATTGCAAGGCAGATAGCTCCTTGTCAGTGCCTCTGAATCTCTTGTTCAACTTGCC AACCTGGATTACTGAAGTTGGTGTCTCTCATTTTCCCTGTTTGTTTGTTGTTAACCTAGTAATAAACCTGTTATTATTTTTGTATATAGGTTTGCTTGTAATATGTGGAACTGTAAGCGTATTTGGGAATTGGAATGCCGTTTGTTTATACATCTGGGTATCAGGGTATGCAACACCAGGAAA] [+] EMBL BI813089 [ TTGCCAAACCTGGATTACTGAA TTGGTGTCTCTCATTTTCCCTGTTTGTTTGTTGTTAACCTAGTAATAAACCTGTTATTATTTTTGTATATAGGTTTGCTTGTAATATGTGGAACTGTAAGCGTATTTGGGCACTGGAATGCCGTTTGTTTATAaaaa ] consensusID : consensus_4574#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence [AGTAACTACGCATAAGGAGAATACAAGCACCACGGCTGATCACAAAAGAAGCTGGACCACCTGCAGATGAAGCTATATTCAGAAGTGATTCAGTGAAATCCGCAGTTCTAAGCTCACCACTAGTTGAGTTTAGCACGATTTATTCAGCAACAAATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAGGGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAACAGATCCAGTCAGGGATTGGAAGAGTTCAAGAACGAGGTGATAGTTCTATCCAAACTGCAACACCGGAATTTGGTTAGGCTCTTTGGTTGTTGTGTTCATGGAGAAGAGAAGATGTTGCTGTATGAATACATGCCCAACAAGAGCCTTGACTCATTTATTTTTGATGAAAGTAAGAGGCTAATATTTGGATGGAAATTGCGATACAAGATTATTCAGGGAATTGGGAGAGGATTATTGTACCTTCATCAGGATTCCAGGCTCAAAATTATTCACAGGGATCTC] [+] EMBL BP184664 [AGTAACTACGCATAAGGAGAATACAAGCACCACGGCTGATCACAAAAGAAGCTGGACCACCTGCAGATGAAGCTATATTCAGAAGTGATTCAGTGAAATCCGCAGTTCTAAGCTCACCACTAGTTGAGTTTAGCACGATTTATTCAGCAACAAATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAGGGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAACAGATCCAGTCAGGGATTGGAAGAGTTCAAGAACGAGGTGATAGTTCTATCCAAACTGCAACACCGGAATTTGGTTAGGCTCTTTGGTTGTTGTGTTCATGGAGAAGAGAAGATGTTGCTGTATGAATACATGCCCAACAAGAGCCTTGACTCATTTATTTTTGATGAAAGTAAGAGGCTAATATTTGGATGGAAATTGCGATACAAGATTATTCAGGGAATTGGGAGAGGATTATTGTACCTTCATCAGGATTCCAGGCTCAAAATTATTCACAGGGATCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4574#0 CGGCGACGGCGGAGGCGACGAGGCCGAAGCCGCCGGCGGTCTGGCCGGCGATGGAAGGGG 60 consensus_4574#1 ------------------------------------------------------------ consensus_4574#0 GGGGGGGGACCCGCCGGCCGTAGGCGCGATGGGTCGGCCGCCCAGATCCTCTCCACCGTG 120 consensus_4574#1 ------------------------------------------------------------ consensus_4574#0 AAGATCTCCCCATCTTATCCTCGGCGATCTGCGTTTCCCTTGCTCGGAAAGGCGACCCAG 180 consensus_4574#1 ------------------------------------------------------------ consensus_4574#0 AATCAGTAACTACGCATAAGGAGAATACAAGCACCACGGCTGATCACAAAAGAAGCTGGA 240 consensus_4574#1 ----AGTAACTACGCATAAGGAGAATACAAGCACCACGGCTGATCACAAAAGAAGCTGGA 56 ******************************************************** consensus_4574#0 CCACCTGCAGATGAAGCTATATTCAGAAGTGATTCAGTGAAATCCGCAGTTCTAAGCTCA 300 consensus_4574#1 CCACCTGCAGATGAAGCTATATTCAGAAGTGATTCAGTGAAATCCGCAGTTCTAAGCTCA 116 ************************************************************ consensus_4574#0 CCACTAGTTGAGTTTAGCACGATTTATTCAGCAACAAATAATTTTAGCAACAAGCTTGGT 360 consensus_4574#1 CCACTAGTTGAGTTTAGCACGATTTATTCAGCAACAAATAATTTTAGCAACAAGCTTGGT 176 ************************************************************ consensus_4574#0 GGAGGCGGATTTGGTTTTGTTTACAAGGGGGTACTACCTGATGGCCAGGAGATTGCTGTC 420 consensus_4574#1 GGAGGCGGATTTGGTTTTGTTTACAAGGGGGTACTACCTGATGGCCAGGAGATTGCTGTC 236 ************************************************************ consensus_4574#0 AAGAGGCTGTCAAACAGATCCAGTCAGGGATTGGAAGAGTTCAAGAACGAGATGAAAGTA 480 consensus_4574#1 AAGAGGCTGTCAAACAGATCCAGTCAGGGATTGGAAGAGTTCAAGAACGAGGTGA----- 291 *************************************************** *** consensus_4574#0 AGAGGCTAATATTTGGATGGAAATTGCGATACAAGATTATTCAGGGAATTGGGAGAGGAT 540 consensus_4574#1 ---------TAGTTCTATCCAAACTGCAACACC-----------GGAATTTGGTTAGGCT 331 ** ** ** *** *** * ** ****** ** *** * consensus_4574#0 TATTGTACCTTCATCAGGATTCCAGGCTCAAAATTATTCACAGGGATCTCAAAGCGAGCA 600 consensus_4574#1 CTTTGGTTGTT-----GTGTTCATGGAGAAGAG---------AAGATGTTGCTGTATG-A 376 *** ** * *** ** * * *** * * * * consensus_4574#0 ATATTCTGCTTGATGATGATTTCAACCCCAAGATATCTGACTTTGGTATGGCTAGAATAT 660 consensus_4574#1 ATACA-TGCCCAACAAGAGCCTTGACTCATTTATTTTTGATGAAAGTAAGAGGCTAATAT 435 *** *** * * * ** * ** * *** *** * ***** consensus_4574#0 TTGGTGAACACCAACTTCAAGCCCTTACCCACCGAATTGTTGGAACCTATGGCTACATCT 720 consensus_4574#1 TTGGATGGAAATTGCGATACAAGATTATTCAGGGAATTGGGAGAGGATTATTGTACCTTC 495 **** * * * *** ** ****** ** * *** * consensus_4574#0 CTCCAGAGTACGCAATGGAGGGCAAATTCTCTGAGAAATCAGACATCTTCAGTTTCGGCG 780 consensus_4574#1 ATCAGGATTCCAGGCTCAAAATT--ATTCACAGGGATCTC-------------------- 533 ** ** * * * * **** * * ** ** consensus_4574#0 TGTTGATCCTAGAGATTGTGAGCGGACGAAGGAACAGCTCATTTGTTGATGAAGAATGGT 840 consensus_4574#1 ------------------------------------------------------------ consensus_4574#0 CAATGAATCTCTTGGGTTACGCGTGGACACTGTGGAAGGAAGGCAGTGTCTCGGAGCTGA 900 consensus_4574#1 ------------------------------------------------------------ consensus_4574#0 TCGATCCACTCATGGGCACCATATGCTCTTACGATGAAGTATGCAGATGCATCCAGGTTG 960 consensus_4574#1 ------------------------------------------------------------ consensus_4574#0 GTCTTCTGTGCGTGCAGGAATTACCAGGTGATAGGCCAAGCATGCCCCTGGTGCTCAGGA 1020 consensus_4574#1 ------------------------------------------------------------ consensus_4574#0 TGCTCAGTGGGGATGTTACACTTCCTGCTCCGAAGCAAGCTGCATTTTTCGTCGGAAGGG 1080 consensus_4574#1 ------------------------------------------------------------ consensus_4574#0 TTCCTCTGGATGATAACAATACTGGATCGGGGAATCAGTTGACGTATACTCAATTGCAAG 1140 consensus_4574#1 ------------------------------------------------------------ consensus_4574#0 GCAGATAGCTCCTTGTCAGTGCCTCTGAATCTCTTGTTCAACTTGCCAACCTGGATTACT 1200 consensus_4574#1 ------------------------------------------------------------ consensus_4574#0 GAAGTTGGTGTCTCTCATTTTCCCTGTTTGTTTGTTGTTAACCTAGTAATAAACCTGTTA 1260 consensus_4574#1 ------------------------------------------------------------ consensus_4574#0 TTATTTTTGTATATAGGTTTGCTTGTAATATGTGGAACTGTAAGCGTATTTGGGAATTGG 1320 consensus_4574#1 ------------------------------------------------------------ consensus_4574#0 AATGCCGTTTGTTTATACATCTGGGTATCAGGGTATGCAACACCAGGAAA 1370 consensus_4574#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||