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Oryza sativa
cluster # 4578 cluster # 4578       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4578#0 length = 1075 sequences # 3  

consensusID : consensus_4578#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1075
fasta sequence
                              [TTGATTGCTCTATCAAAAAGTTGCATACATTTGGAAGATCTTGTGGCTGCAGGATGTAACAACATAACAGATGCAGGGATCTCAGGTCTAGCTGATGGTTGTCACAAGATGAAGTCACTAGACATGAGCAAATGCAATAAAGTCGGGGATCCTGGAGTCTGTAAATTTGCTGAGGTCTCTTCATCGTCATTGGTATCATTAAAACTGTTGGATTGCAACAAAGTGGGTGATAAGTCCATACATGCACTAGCTAAGTTCTGCCATAACCTGGAGACACTCGTCATTGGTGGATGTCGTGATGTTACTGATGCGTCCATAGAAGCACTGGCTTTTGCCTGCTATAGCAGACTAAAGTGCTTAAGAATGGATTGGTGCTTGAAGATAACAGACTCCTCACTGAGAAGTCTATTGTCTAACTGTAAACTTCTTGTGGCTATTGATGTGGGGTGCTGTGACCAAATTACAGATGCAGCATTTCAGGATATGGATGCAAATGGATTTCAATCTGCACTGAGACTTCTGAAGATCAGCAGCTGTGTTAGGATCACAGTTGCAGGAGTCAGGAATGTGATCGAATCCTGTATGGCCCTTGAGCACCTAGATGTTCGGTCATGCCCTCAGGTCACAAGGCAGAGCTGTGAGCAAGCTGGGCTGCAATTTCCTGGTAGCTGCAAGGTAAACTTTGAAGGCAGCTTATCTGAGTCTGATCCATCTGTTGCTATATTCTTTTAGGACGATCAATAGCGTCCCATAATTCTTTTCTAGATTTCGCCGAAGAACTTGAGAACTCATCATGTCAAAATGTACCTGATATTGTGGTTGGTTTTGGGCGTGTGTTGCACAATTTGAGGTAGAACTGGATGATGCCGTGGATGAAAAAATGTGCAGGTGTGCACTGTTCAATTCTCATGTGCTGTACCTGTAGTCCTGTACTATGTAGAAAGTAGCACACTACAGATTCTTGGAATCTGTTGGTTAGTACTTAGTAGTTAGCTTTTGAGAATATAGAGAAACTGGCTTCTAGTTCATGATTCTACAACTACATTTTCTTAGAATTTAGGCGACAATCTGGATT]

[+] EMBL CF326056             [TTGATTGCTCTATCAAAAAGTTGCATACATTTGGAAGATCTTGTGGCTGCAGGATGTAACAACATAACAGATGCAGGGATCTCAGGTCTAGCTGATGGTTGTCACAAGATGAAGTCACTAGACATGAGCAAATGCAATAAAGTCGGGGATCCTGGAGTCTGTAAATTTGCTGAGGTCTCTTCATCGTCATTGGTATCATTAAAACTGTTGGATTGCAACAAAGTGGGTGATAAGTCCATACATGCACTAGCTAAGTTCTGCCATAACCTGGAGACACTCGTCATTGGTGGATGTCGTGATGTTACTGATGCGTCCATAGAAGCACTGGCTTTTGCCTGCTATAGCAGACTAAAGTGCTTAAGAATGGATTGGTGCTTGAAGATAACAGACTCCTCACTGAGAAGTCTATTGTCTAACTGTAAACTTCTTGTGGCTATTGATGTGGGGTGCTGTGACCAAATTACAGATGCAGCATTTCAGGATATGGATGCAAATGGATTTCAATCTGCACTGAGACTTCTGAAGATCAGCAGCTGTGTTAGGATCACAGTTGCAGGAGTCAGGAATGTGATCGAATCCTGTATGGCCCTTGAGCACCTAGATGTTCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK063955             [                                                                                                                                         TAAAGTCGGGGATCCTGGAGTCTGTAAATTTGCTGAGGTCTCTTCATCGTCATTGGTATCATTAAAACTGTTGGATTGCAACAAAGTGGGTGATAAGTCCATACATGCACTAGCTAAGTTCTGCCATAACCTGGAGACACTCGTCATTGGTGGATGTCGTGATGTTACTGATGCGTCCATAGAAGCACTGGCTTTTGCCTGCTATAGCAGACTAAAGTGCTTAAGAATGGATTGGTGCTTGAAGATAACAGACTCCTCACTGAGAAGTCTATTGTCTAACTGTAAACTTCTTGTGGCTATTGATGTGGGGTGCTGTGACCAAATTACAGATGCAGCATTTCAGGATATGGATGCAAATGGATTTCAATCTGCACTGAGACTTCTGAAGATCAGCAGCTGTGTTAGGATCACAGTTGCAGGAGTCAGGAATGTGATCGAATCCTGTATGGCCCTTGAGCACCTAGATGTTCGGTCATGCCCTCAGGTCACAAGGCAGAGCTGTGAGCAAGCTGGGCTGCAATTTCCTGGTAGCTGCAAGGTAAACTTTGAAGGCAGCTTATCTGAGTCTGATCCATCTGTTGCTATATTCTTTTAGGACGATCAATAGCGTCCCATAATTCTTTTCTAGATTTCGCCGAAGAACTTGAGAACTCATCATGTCAAAATGTACCTGATATTGTGGTTGGTTTTGGGCGTGTGTTGCACAATTTGAGGTAGAACTGGATGATGCCGTGGATGAAAAAATGTGCAGGTGTGCACTGTTCAATTCTCATGTGCTGTACCTGTAGTCCTGTACTATGTAGAAAGTAGCACACTACAGATTCTTGGAATCTGTTGGTTAGTACTTAGTAGTTAGCTTTTGAGAATATAGAGAAACTGGCTTCTAGTTCATGATTCTACAACTACATTTTCTTAGAATTTAGGCGACAATCTGGATT]
[+] EMBL C73836               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TCATGCCCTCAGGTCACAAGGCAGAGCTGTGAGCAAGCTGGGCTGCAATTTCCTGGTAGCTGCAAGGTAAACTTTGAAGGCAGCTTATCTGAGTCTGATCCATCTGTTGCTATATTCTTTTAGGACGATCAATAGCGTCCCATAATTCTTTTCTAGATTTCGCCGAAGAACTTGAGAACTCATCATGTCAAAATGTACCTGATATTGTGGTTGGTTTTGGGCGTGTGTTGCACAATTTGAGGTAGAACTGGATGATGCCGTGGATGAAAAAATGTGCAGGTGTGCACTGTTCAATTCTCATGTGCTGTACCTGTAGTCCTGTACTATGTGGAAA                                                                                                                                    ]


>consensus_4578#0 TTGATTGCTCTATCAAAAAGTTGCATACATTTGGAAGATCTTGTGGCTGCAGGATGTAAC AACATAACAGATGCAGGGATCTCAGGTCTAGCTGATGGTTGTCACAAGATGAAGTCACTA GACATGAGCAAATGCAATAAAGTCGGGGATCCTGGAGTCTGTAAATTTGCTGAGGTCTCT TCATCGTCATTGGTATCATTAAAACTGTTGGATTGCAACAAAGTGGGTGATAAGTCCATA CATGCACTAGCTAAGTTCTGCCATAACCTGGAGACACTCGTCATTGGTGGATGTCGTGAT GTTACTGATGCGTCCATAGAAGCACTGGCTTTTGCCTGCTATAGCAGACTAAAGTGCTTA AGAATGGATTGGTGCTTGAAGATAACAGACTCCTCACTGAGAAGTCTATTGTCTAACTGT AAACTTCTTGTGGCTATTGATGTGGGGTGCTGTGACCAAATTACAGATGCAGCATTTCAG GATATGGATGCAAATGGATTTCAATCTGCACTGAGACTTCTGAAGATCAGCAGCTGTGTT AGGATCACAGTTGCAGGAGTCAGGAATGTGATCGAATCCTGTATGGCCCTTGAGCACCTA GATGTTCGGTCATGCCCTCAGGTCACAAGGCAGAGCTGTGAGCAAGCTGGGCTGCAATTT CCTGGTAGCTGCAAGGTAAACTTTGAAGGCAGCTTATCTGAGTCTGATCCATCTGTTGCT ATATTCTTTTAGGACGATCAATAGCGTCCCATAATTCTTTTCTAGATTTCGCCGAAGAAC TTGAGAACTCATCATGTCAAAATGTACCTGATATTGTGGTTGGTTTTGGGCGTGTGTTGC ACAATTTGAGGTAGAACTGGATGATGCCGTGGATGAAAAAATGTGCAGGTGTGCACTGTT CAATTCTCATGTGCTGTACCTGTAGTCCTGTACTATGTAGAAAGTAGCACACTACAGATT CTTGGAATCTGTTGGTTAGTACTTAGTAGTTAGCTTTTGAGAATATAGAGAAACTGGCTT CTAGTTCATGATTCTACAACTACATTTTCTTAGAATTTAGGCGACAATCTGGATT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)