These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4583#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 758 fasta sequence [CCGAAATGGATAAACCAGCGCCGCAGGCGTTCGTATACCGTATCAGCACGGCGGATGAGTGGGCGCAGCTTCAGCGCACCGGCGGCACCCTTGGCGGTGACCTCGACCGCTCCACCGGCTGTATCCACCTCAGCGACCTCAGTCAGGTGAGGAAAACGCTTAAGAACTTTTTCCTAGGAAGGAATGATCTATACCTACTACAAGTTGACACTTCCAAGCTTTCAGATGGCTTAGTTTATGAGGCAGCTGATGATTCAAACTATTTTCCTCATTTCTATGGCCCTGGTCGGAGTTTTGCACCTCTTCAACTAGACGCTGTTATCAAGGAGGCAGAGAAAATAGTTCTGGTAAACAATGATTTCACCTGCAGTCTACTTGATGGAGCAGACCCCTTATCGTGATGTGTAAGGGTGACCTTTCCCTTGATCTTTATAATGTTTTGAAAAATTCGCTACAGGACGCTCAAAAGTTTGCAGTTATTTGTAAAAAAAGCTGCAAAAATGCAAAAATATTACTGCTCCATATCTAACATCTCCAGGAAGTTGAACCTGGTATATTCCAAGGATCATAGTAAGGGCAGACATATTGTATGCATCATATTTATAAACATCATTGCATATTCTTCAGTAGCCTTAACTGTATGCCAAGAGACAATCTTATTTTTTGATCACCCCACCAAATTAATGTGAAGAATGATAGCTGTATAATCTCTAATTCCTGTTAAAAAGGGTGCAAACTTGAAGTATTGATTAGTTCTC] [+] EMBL CF326132 [CCGAAATGGATAAACCAGCGCCGCAGGCGTTCGTATACCGTATCAGCACGGCGGATGAGTGGGCGCAGCTTCAGCGCACCGGCGGCACCCTTGGCGGTGACCTCGACCGCTCCACCGGCTGTATCCACCTCAGCGACCTCAGTCAGGTGAGGAAAACGCTTAAGAACTTTTTCCTAGGAAGGAATGATCTATACCTACTACAAGTTGACACTTCCAAGCTTTCAGATGGCTTAGTTTATGAGGCAGCTGATGATTCAAACTATTTTCCTCATTTCTATGGCCCTGGTCGGAGTTTTGCACCTCTTCAACTAGACGCTGTTATCAAGGAGGCAGAGAAAATAGTTCTGGTAAACAATGATTTCACCTGCAGTCTACTTGATGGAGCAGACCCCTTATCGTGATGTGTAAGGGTGACCTTTCCCTTGATCTTTATAATGTTTTGAAAAATTCGCTACAGGACGCTCAAAAGTTTGCAGTTATTTGTAAAAAAAGCTGCAAAAATGCAAAAATATTACTGCTCCAT ] [+] EMBL AK064634 [ GCGGATGAGTGGGCGCAGCTTCAGCGCACCGGCGGCACCCTTGGCGGTGACCTCGACCGCTCCACCGGCTGTATCCACCTCAGCGACCTCGGTCAGGTGAGGAAAACGCTTAAGAACTTTTTCCTAGGAAGGAATGATCTATACCTACTACAAGTTGACACTTCCAAGCTTTCAGATGGCTTAGTTTATGAGGCAGCTGATGATTCAAACTATTTTCCTCATTTCTATGGCCCTGGTCGGAGTTTTGCACCTCTTCAACTAGACGCTGTTATCAAGGAGGCAGAGAAAATAGTTCTGGTAAACAATGATTTCACCTGCAGTCTACTTGATGGAGCAGACCCCTTATCGTGATGTGTAAGGGTGACCTTTCCCTTGATCTTTATAATGTTTTGAAAAATTCGCTACAGGACGCTCAAAAGTTTGCAGTTATTTGTAAAAAAAGCTGCAAAAATGCAAAAATATTACTGCTCCATATCTAACATCTCCAGGAAGTTGAACCTGGTATATTCCAAGGATCATAGTAAGGGCAGACATATTGTATGCATCATATTTATAAACATCATTGCATATTCTTCAGTAGCCTTAACTGTATGCCAAGAGACAATCTTATTTTTTGATCACCCCACCAAATTAATGTGAAGAATGATAGCTGTATAATCTCTAATTCCTGTTAAAAAGGGTGCAAACTTGAAGTATTGATTAGTTCTC] consensusID : consensus_4583#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [TCCTATAGGGGGAATTGGGGCGCGGGCNCCCCCTAGAGGTGGCCGGTACCCATAACCTTCCTTAGGTGGAGGCCGACCCAAGGGGGGGGCGCAGCTTTAGCGCACCGCGGGCACCCTAGGCGGTTTCCTTGCGCGCTCCACCGGCTGTTTCCCCCTCAGCGACCTCAGTCAGGTGAGGAAAACGCTTAAGAACCTTTTCCTAGGAAGGAATGATCTATACCTTCTACAAGTTCCCCCTTTCAAGCTTTTAGATGGCTTAGTTTTTGAGGCAGCTGATGATTCAAACTATTTTCCTCATTTTTATGGCCCTGGTCGGAGTTTTGCCCCTCTTCAACTAGACCCTGTTATCAAGGCAGAGGAAATAGTTTTGGTAAACAATGATTTCCCCTGCAGTTTACTTGATGGAGCAGACCCCTTATCGTGATGTGTAAGGGGGCCCTTTCCCCTGATCTTTATAATGTTTTGAAAAATTCGCTCCATGACGCTCAAAAGTTTGCAGTTATTTGTAAAAAAAGCTGCGAAAATGCAAAAATATTACTGCTCCATATCTAACATCTCCAGGAAGTTGAATTTGGTATATTCCAAGGATCATAGTAAGGGCAGCCATATTGTTTGCCTCATATATATAAACATCATTGCATATTTTTCAGTAGCCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA758999 [TCCTATAGGGGGAATTGGGGCGCGGGCNCCCCCTAGAGGTGGCCGGTACCCATAACCTTCCTTAGGTGGAGGCCGACCCAAGGGGGGGGCGCAGCTTTAGCGCACCGCGGGCACCCTAGGCGGTTTCCTTGCGCGCTCCACCGGCTGTTTCCCCCTCAGCGACCTCAGTCAGGTGAGGAAAACGCTTAAGAACCTTTTCCTAGGAAGGAATGATCTATACCTTCTACAAGTTCCCCCTTTCAAGCTTTTAGATGGCTTAGTTTTTGAGGCAGCTGATGATTCAAACTATTTTCCTCATTTTTATGGCCCTGGTCGGAGTTTTGCCCCTCTTCAACTAGACCCTGTTATCAAGGCAGAGGAAATAGTTTTGGTAAACAATGATTTCCCCTGCAGTTTACTTGATGGAGCAGACCCCTTATCGTGATGTGTAAGGGGGCCCTTTCCCCTGATCTTTATAATGTTTTGAAAAATTCGCTCCATGACGCTCAAAAGTTTGCAGTTATTTGTAAAAAAAGCTGCGAAAATGCAAAAATATTACTGCTCCATATCTAACATCTCCAGGAAGTTGAATTTGGTATATTCCAAGGATCATAGTAAGGGCAGCCATATTGTTTGCCTCATATATATAAACATCATTGCATATTTTTCAGTAGCCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4583#0 -----------------------------CCGAAATGGATAAACCAGCGCCGCAGGCGTT 31 consensus_4583#1 TCCTATAGGGGGAATTGGGGCGCGGGCNCCCCCTAGAGGTGGCCGGTACCCATAACCTTC 60 ** * * * * ** * * * consensus_4583#0 CGTATACCGTATCAGCACGGCGGATGAGTGGGCGCAGCTTCAGCGCACCGGCGGCACCCT 91 consensus_4583#1 CTTA---GGTGGAGGCCGACCCAAGGGGGGGGCGCAGCTTTAGCGCACCGCGGGCACCCT 117 * ** ** ** * * * * *********** ********* ******** consensus_4583#0 TGGCGGTGACCTCGACCGCTCCACCGGCTGTATCCACCTCAGCGACCTCAGTCAGGTGAG 151 consensus_4583#1 AGGCGGTTTCCTTGCGCGCTCCACCGGCTGTTTCCCCCTCAGCGACCTCAGTCAGGTGAG 177 ****** *** * *************** *** ************************ consensus_4583#0 GAAAACGCTTAAGAACTTTTTCCTAGGAAGGAATGATCTATACCTACTACAAGTTGACAC 211 consensus_4583#1 GAAAACGCTTAAGAACCTTTTCCTAGGAAGGAATGATCTATACCTTCTACAAGTTCCCCC 237 **************** **************************** ********* * * consensus_4583#0 TTCCAAGCTTTCAGATGGCTTAGTTTATGAGGCAGCTGATGATTCAAACTATTTTCCTCA 271 consensus_4583#1 TTTCAAGCTTTTAGATGGCTTAGTTTTTGAGGCAGCTGATGATTCAAACTATTTTCCTCA 297 ** ******** ************** ********************************* consensus_4583#0 TTTCTATGGCCCTGGTCGGAGTTTTGCACCTCTTCAACTAGACGCTGTTATCAAGGAGGC 331 consensus_4583#1 TTTTTATGGCCCTGGTCGGAGTTTTGCCCCTCTTCAACTAGACCCTGTTATCAA---GGC 354 *** *********************** *************** ********** *** consensus_4583#0 AGAGAAAATAGTTCTGGTAAACAATGATTTCACCTGCAGTCTACTTGATGGAGCAGACCC 391 consensus_4583#1 AGAGGAAATAGTTTTGGTAAACAATGATTTCCCCTGCAGTTTACTTGATGGAGCAGACCC 414 **** ******** ***************** ******** ******************* consensus_4583#0 CTTATCGTGATGTGTAAGGGTGACCTTTCCCTTGATCTTTATAATGTTTTGAAAAATTCG 451 consensus_4583#1 CTTATCGTGATGTGTAAGGGGGCCCTTTCCCCTGATCTTTATAATGTTTTGAAAAATTCG 474 ******************** * ******** **************************** consensus_4583#0 CTACAGGACGCTCAAAAGTTTGCAGTTATTTGTAAAAAAAGCTGCAAAAATGCAAAAATA 511 consensus_4583#1 CTCCATGACGCTCAAAAGTTTGCAGTTATTTGTAAAAAAAGCTGCGAAAATGCAAAAATA 534 ** ** *************************************** ************** consensus_4583#0 TTACTGCTCCATATCTAACATCTCCAGGAAGTTGAACCTGGTATATTCCAAGGATCATAG 571 consensus_4583#1 TTACTGCTCCATATCTAACATCTCCAGGAAGTTGAATTTGGTATATTCCAAGGATCATAG 594 ************************************ ********************** consensus_4583#0 TAAGGGCAGACATATTGTATGCATCATATTTATAAACATCATTGCATATTCTTCAGTAGC 631 consensus_4583#1 TAAGGGCAGCCATATTGTTTGCCTCATATATATAAACATCATTGCATATTTTTCAGTAGC 654 ********* ******** *** ****** ******************** ********* consensus_4583#0 CTTAACTGTATGCCAAGAGACAATCTTATTTTTTGATCACCCCACCAAATTAATGTGAAG 691 consensus_4583#1 CTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------------- 692 *** * * ** * * ** * * consensus_4583#0 AATGATAGCTGTATAATCTCTAATTCCTGTTAAAAAGGGTGCAAACTTGAAGTATTGATT 751 consensus_4583#1 ------------------------------------------------------------ consensus_4583#0 AGTTCTC 758 consensus_4583#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||