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Oryza sativa
cluster # 4583 cluster # 4583       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4583#0 length = 758 sequences # 2  
consensus_4583#1 length = 692 sequences # 1  

consensusID : consensus_4583#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 758
fasta sequence
                              [CCGAAATGGATAAACCAGCGCCGCAGGCGTTCGTATACCGTATCAGCACGGCGGATGAGTGGGCGCAGCTTCAGCGCACCGGCGGCACCCTTGGCGGTGACCTCGACCGCTCCACCGGCTGTATCCACCTCAGCGACCTCAGTCAGGTGAGGAAAACGCTTAAGAACTTTTTCCTAGGAAGGAATGATCTATACCTACTACAAGTTGACACTTCCAAGCTTTCAGATGGCTTAGTTTATGAGGCAGCTGATGATTCAAACTATTTTCCTCATTTCTATGGCCCTGGTCGGAGTTTTGCACCTCTTCAACTAGACGCTGTTATCAAGGAGGCAGAGAAAATAGTTCTGGTAAACAATGATTTCACCTGCAGTCTACTTGATGGAGCAGACCCCTTATCGTGATGTGTAAGGGTGACCTTTCCCTTGATCTTTATAATGTTTTGAAAAATTCGCTACAGGACGCTCAAAAGTTTGCAGTTATTTGTAAAAAAAGCTGCAAAAATGCAAAAATATTACTGCTCCATATCTAACATCTCCAGGAAGTTGAACCTGGTATATTCCAAGGATCATAGTAAGGGCAGACATATTGTATGCATCATATTTATAAACATCATTGCATATTCTTCAGTAGCCTTAACTGTATGCCAAGAGACAATCTTATTTTTTGATCACCCCACCAAATTAATGTGAAGAATGATAGCTGTATAATCTCTAATTCCTGTTAAAAAGGGTGCAAACTTGAAGTATTGATTAGTTCTC]

[+] EMBL CF326132             [CCGAAATGGATAAACCAGCGCCGCAGGCGTTCGTATACCGTATCAGCACGGCGGATGAGTGGGCGCAGCTTCAGCGCACCGGCGGCACCCTTGGCGGTGACCTCGACCGCTCCACCGGCTGTATCCACCTCAGCGACCTCAGTCAGGTGAGGAAAACGCTTAAGAACTTTTTCCTAGGAAGGAATGATCTATACCTACTACAAGTTGACACTTCCAAGCTTTCAGATGGCTTAGTTTATGAGGCAGCTGATGATTCAAACTATTTTCCTCATTTCTATGGCCCTGGTCGGAGTTTTGCACCTCTTCAACTAGACGCTGTTATCAAGGAGGCAGAGAAAATAGTTCTGGTAAACAATGATTTCACCTGCAGTCTACTTGATGGAGCAGACCCCTTATCGTGATGTGTAAGGGTGACCTTTCCCTTGATCTTTATAATGTTTTGAAAAATTCGCTACAGGACGCTCAAAAGTTTGCAGTTATTTGTAAAAAAAGCTGCAAAAATGCAAAAATATTACTGCTCCAT                                                                                                                                                                                                                                           ]
[+] EMBL AK064634             [                                                  GCGGATGAGTGGGCGCAGCTTCAGCGCACCGGCGGCACCCTTGGCGGTGACCTCGACCGCTCCACCGGCTGTATCCACCTCAGCGACCTCGGTCAGGTGAGGAAAACGCTTAAGAACTTTTTCCTAGGAAGGAATGATCTATACCTACTACAAGTTGACACTTCCAAGCTTTCAGATGGCTTAGTTTATGAGGCAGCTGATGATTCAAACTATTTTCCTCATTTCTATGGCCCTGGTCGGAGTTTTGCACCTCTTCAACTAGACGCTGTTATCAAGGAGGCAGAGAAAATAGTTCTGGTAAACAATGATTTCACCTGCAGTCTACTTGATGGAGCAGACCCCTTATCGTGATGTGTAAGGGTGACCTTTCCCTTGATCTTTATAATGTTTTGAAAAATTCGCTACAGGACGCTCAAAAGTTTGCAGTTATTTGTAAAAAAAGCTGCAAAAATGCAAAAATATTACTGCTCCATATCTAACATCTCCAGGAAGTTGAACCTGGTATATTCCAAGGATCATAGTAAGGGCAGACATATTGTATGCATCATATTTATAAACATCATTGCATATTCTTCAGTAGCCTTAACTGTATGCCAAGAGACAATCTTATTTTTTGATCACCCCACCAAATTAATGTGAAGAATGATAGCTGTATAATCTCTAATTCCTGTTAAAAAGGGTGCAAACTTGAAGTATTGATTAGTTCTC]


>consensus_4583#0 CCGAAATGGATAAACCAGCGCCGCAGGCGTTCGTATACCGTATCAGCACGGCGGATGAGT GGGCGCAGCTTCAGCGCACCGGCGGCACCCTTGGCGGTGACCTCGACCGCTCCACCGGCT GTATCCACCTCAGCGACCTCAGTCAGGTGAGGAAAACGCTTAAGAACTTTTTCCTAGGAA GGAATGATCTATACCTACTACAAGTTGACACTTCCAAGCTTTCAGATGGCTTAGTTTATG AGGCAGCTGATGATTCAAACTATTTTCCTCATTTCTATGGCCCTGGTCGGAGTTTTGCAC CTCTTCAACTAGACGCTGTTATCAAGGAGGCAGAGAAAATAGTTCTGGTAAACAATGATT TCACCTGCAGTCTACTTGATGGAGCAGACCCCTTATCGTGATGTGTAAGGGTGACCTTTC CCTTGATCTTTATAATGTTTTGAAAAATTCGCTACAGGACGCTCAAAAGTTTGCAGTTAT TTGTAAAAAAAGCTGCAAAAATGCAAAAATATTACTGCTCCATATCTAACATCTCCAGGA AGTTGAACCTGGTATATTCCAAGGATCATAGTAAGGGCAGACATATTGTATGCATCATAT TTATAAACATCATTGCATATTCTTCAGTAGCCTTAACTGTATGCCAAGAGACAATCTTAT TTTTTGATCACCCCACCAAATTAATGTGAAGAATGATAGCTGTATAATCTCTAATTCCTG TTAAAAAGGGTGCAAACTTGAAGTATTGATTAGTTCTC



consensusID : consensus_4583#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence
                              [TCCTATAGGGGGAATTGGGGCGCGGGCNCCCCCTAGAGGTGGCCGGTACCCATAACCTTCCTTAGGTGGAGGCCGACCCAAGGGGGGGGCGCAGCTTTAGCGCACCGCGGGCACCCTAGGCGGTTTCCTTGCGCGCTCCACCGGCTGTTTCCCCCTCAGCGACCTCAGTCAGGTGAGGAAAACGCTTAAGAACCTTTTCCTAGGAAGGAATGATCTATACCTTCTACAAGTTCCCCCTTTCAAGCTTTTAGATGGCTTAGTTTTTGAGGCAGCTGATGATTCAAACTATTTTCCTCATTTTTATGGCCCTGGTCGGAGTTTTGCCCCTCTTCAACTAGACCCTGTTATCAAGGCAGAGGAAATAGTTTTGGTAAACAATGATTTCCCCTGCAGTTTACTTGATGGAGCAGACCCCTTATCGTGATGTGTAAGGGGGCCCTTTCCCCTGATCTTTATAATGTTTTGAAAAATTCGCTCCATGACGCTCAAAAGTTTGCAGTTATTTGTAAAAAAAGCTGCGAAAATGCAAAAATATTACTGCTCCATATCTAACATCTCCAGGAAGTTGAATTTGGTATATTCCAAGGATCATAGTAAGGGCAGCCATATTGTTTGCCTCATATATATAAACATCATTGCATATTTTTCAGTAGCCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA758999             [TCCTATAGGGGGAATTGGGGCGCGGGCNCCCCCTAGAGGTGGCCGGTACCCATAACCTTCCTTAGGTGGAGGCCGACCCAAGGGGGGGGCGCAGCTTTAGCGCACCGCGGGCACCCTAGGCGGTTTCCTTGCGCGCTCCACCGGCTGTTTCCCCCTCAGCGACCTCAGTCAGGTGAGGAAAACGCTTAAGAACCTTTTCCTAGGAAGGAATGATCTATACCTTCTACAAGTTCCCCCTTTCAAGCTTTTAGATGGCTTAGTTTTTGAGGCAGCTGATGATTCAAACTATTTTCCTCATTTTTATGGCCCTGGTCGGAGTTTTGCCCCTCTTCAACTAGACCCTGTTATCAAGGCAGAGGAAATAGTTTTGGTAAACAATGATTTCCCCTGCAGTTTACTTGATGGAGCAGACCCCTTATCGTGATGTGTAAGGGGGCCCTTTCCCCTGATCTTTATAATGTTTTGAAAAATTCGCTCCATGACGCTCAAAAGTTTGCAGTTATTTGTAAAAAAAGCTGCGAAAATGCAAAAATATTACTGCTCCATATCTAACATCTCCAGGAAGTTGAATTTGGTATATTCCAAGGATCATAGTAAGGGCAGCCATATTGTTTGCCTCATATATATAAACATCATTGCATATTTTTCAGTAGCCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_4583#1 TCCTATAGGGGGAATTGGGGCGCGGGCNCCCCCTAGAGGTGGCCGGTACCCATAACCTTC CTTAGGTGGAGGCCGACCCAAGGGGGGGGCGCAGCTTTAGCGCACCGCGGGCACCCTAGG CGGTTTCCTTGCGCGCTCCACCGGCTGTTTCCCCCTCAGCGACCTCAGTCAGGTGAGGAA AACGCTTAAGAACCTTTTCCTAGGAAGGAATGATCTATACCTTCTACAAGTTCCCCCTTT CAAGCTTTTAGATGGCTTAGTTTTTGAGGCAGCTGATGATTCAAACTATTTTCCTCATTT TTATGGCCCTGGTCGGAGTTTTGCCCCTCTTCAACTAGACCCTGTTATCAAGGCAGAGGA AATAGTTTTGGTAAACAATGATTTCCCCTGCAGTTTACTTGATGGAGCAGACCCCTTATC GTGATGTGTAAGGGGGCCCTTTCCCCTGATCTTTATAATGTTTTGAAAAATTCGCTCCAT GACGCTCAAAAGTTTGCAGTTATTTGTAAAAAAAGCTGCGAAAATGCAAAAATATTACTG CTCCATATCTAACATCTCCAGGAAGTTGAATTTGGTATATTCCAAGGATCATAGTAAGGG CAGCCATATTGTTTGCCTCATATATATAAACATCATTGCATATTTTTCAGTAGCCTTTAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4583#0      -----------------------------CCGAAATGGATAAACCAGCGCCGCAGGCGTT 31
consensus_4583#1      TCCTATAGGGGGAATTGGGGCGCGGGCNCCCCCTAGAGGTGGCCGGTACCCATAACCTTC 60
                                                   **   *  * *   *     **  *  * * 

consensus_4583#0      CGTATACCGTATCAGCACGGCGGATGAGTGGGCGCAGCTTCAGCGCACCGGCGGCACCCT 91
consensus_4583#1      CTTA---GGTGGAGGCCGACCCAAGGGGGGGGCGCAGCTTTAGCGCACCGCGGGCACCCT 117
                      * **    **    **    *  * * * *********** *********  ********

consensus_4583#0      TGGCGGTGACCTCGACCGCTCCACCGGCTGTATCCACCTCAGCGACCTCAGTCAGGTGAG 151
consensus_4583#1      AGGCGGTTTCCTTGCGCGCTCCACCGGCTGTTTCCCCCTCAGCGACCTCAGTCAGGTGAG 177
                       ******  *** *  *************** *** ************************

consensus_4583#0      GAAAACGCTTAAGAACTTTTTCCTAGGAAGGAATGATCTATACCTACTACAAGTTGACAC 211
consensus_4583#1      GAAAACGCTTAAGAACCTTTTCCTAGGAAGGAATGATCTATACCTTCTACAAGTTCCCCC 237
                      **************** **************************** *********  * *

consensus_4583#0      TTCCAAGCTTTCAGATGGCTTAGTTTATGAGGCAGCTGATGATTCAAACTATTTTCCTCA 271
consensus_4583#1      TTTCAAGCTTTTAGATGGCTTAGTTTTTGAGGCAGCTGATGATTCAAACTATTTTCCTCA 297
                      ** ******** ************** *********************************

consensus_4583#0      TTTCTATGGCCCTGGTCGGAGTTTTGCACCTCTTCAACTAGACGCTGTTATCAAGGAGGC 331
consensus_4583#1      TTTTTATGGCCCTGGTCGGAGTTTTGCCCCTCTTCAACTAGACCCTGTTATCAA---GGC 354
                      *** *********************** *************** **********   ***

consensus_4583#0      AGAGAAAATAGTTCTGGTAAACAATGATTTCACCTGCAGTCTACTTGATGGAGCAGACCC 391
consensus_4583#1      AGAGGAAATAGTTTTGGTAAACAATGATTTCCCCTGCAGTTTACTTGATGGAGCAGACCC 414
                      **** ******** ***************** ******** *******************

consensus_4583#0      CTTATCGTGATGTGTAAGGGTGACCTTTCCCTTGATCTTTATAATGTTTTGAAAAATTCG 451
consensus_4583#1      CTTATCGTGATGTGTAAGGGGGCCCTTTCCCCTGATCTTTATAATGTTTTGAAAAATTCG 474
                      ******************** * ******** ****************************

consensus_4583#0      CTACAGGACGCTCAAAAGTTTGCAGTTATTTGTAAAAAAAGCTGCAAAAATGCAAAAATA 511
consensus_4583#1      CTCCATGACGCTCAAAAGTTTGCAGTTATTTGTAAAAAAAGCTGCGAAAATGCAAAAATA 534
                      ** ** *************************************** **************

consensus_4583#0      TTACTGCTCCATATCTAACATCTCCAGGAAGTTGAACCTGGTATATTCCAAGGATCATAG 571
consensus_4583#1      TTACTGCTCCATATCTAACATCTCCAGGAAGTTGAATTTGGTATATTCCAAGGATCATAG 594
                      ************************************  **********************

consensus_4583#0      TAAGGGCAGACATATTGTATGCATCATATTTATAAACATCATTGCATATTCTTCAGTAGC 631
consensus_4583#1      TAAGGGCAGCCATATTGTTTGCCTCATATATATAAACATCATTGCATATTTTTCAGTAGC 654
                      ********* ******** *** ****** ******************** *********

consensus_4583#0      CTTAACTGTATGCCAAGAGACAATCTTATTTTTTGATCACCCCACCAAATTAATGTGAAG 691
consensus_4583#1      CTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------------- 692
                      *** *    *    ** * * **    *       *                        

consensus_4583#0      AATGATAGCTGTATAATCTCTAATTCCTGTTAAAAAGGGTGCAAACTTGAAGTATTGATT 751
consensus_4583#1      ------------------------------------------------------------
                                                                                  

consensus_4583#0      AGTTCTC 758
consensus_4583#1      -------
                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)