These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4587#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [GTGTGCTGACCTGGGAGATGCACAGGCTGCACACAGGAGATGGAGTTGCCTGCAGCACAGCACAGCACAGATGATGCAATGCAACCCAGCACAATTGACTGGCACAGTTGAATGTGTAATGTGATGTGGTTGATGTGATGTGAGCTGATGTGTGCACCACACACTGTGCAGTCTGCTGGGGGGGTTGCTAATCCCATTGCGTTTTAATCTAGATCTAGCTTTTGTGAGTGAGAGAG] [+] EMBL BI797487 [GTGTGCTGACCTGGGAGATGCACAGGCTGCACACAGGAGATGGAGTTGCCTGCAGCACAGCACAGCACAGATGATGCAATGCAACCCAGCACAATTGACTGGCACAGTTGAATGTGTAATGTGATGTGGTTGATGTGATGTGAGCTGATGTGTGCACCACACACTGTGCAGTCTGCTGGGGGGGTTGCTAATCCCATTGCGTTTTAATCTAGATCTAGCTTTTGTGAGTGAGAGAG] consensusID : consensus_4587#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 186 fasta sequence [TTCCCCCCTTCGCTCTGGGGTTCGCTAATCCCATTGCGTTTTAATCTAGATCTAGCTTTTGTGAGTGAGAGAGAGACTGTGCTTGCCATTGTATAATCCTCCCCCACCGGATTCTTTTCTTTAATCTACTTTCGGACATTATTAGTAGAGATTTTGTCATCCGATTGCTCCTGCCTGCTTGATCTG] [+] EMBL BI892455 [TTCCCCCCTTCGCTCTGGGGTTCGCTAATCCCATTGCGTTTTAATCTAGATCTAGCTTTTGTGAGTGAGAGAGAGACTGTGCTTGCCATTGTATAATCCTCCCCCACCGGATTCTTTTCTTTAATCTACTTTCGGACATTATTAGTAGAGATTTTGTCATCCGATTGCTCCTGCCTGCTTGATCTG] [+] EMBL BI795060 [TTCCCCCCTTCGCTCTGGGGTT GCTAATCCCATTGCGTTTTAATCTAGATCTAGCTTTTGTGAGTGAGAGAGAGACTGTGCTTGCCATTGTATAATCCTCCCCCACCGGATTCTTTTCTTTAATCTACTTTCGGACATTATTAGTAaaaaaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4587#0 GTGTGCTGACCTGGGAGATGCACAGGCTGCACACAGGAGATGGAGTTGCCTGCAGCACAG 60 consensus_4587#1 ---------------------------------------------TTCCCCCCTTCGCTC 15 ** ** * * * consensus_4587#0 CACAGCACAGATGATGCAATGCAACCCAGCACAATTGACTGGCACAGTTGAATGTGTAAT 120 consensus_4587#1 TGGGGTTCGCTAATCCCATTGCGTTTTAATCTAGAT--CTAGCTTTTGTGAGTGAGAGAG 73 * * ** *** * * * ** ** *** ** * * consensus_4587#0 GTGATGTGGTTGATGTGATGTGAGCTGATGTGTGCACCACACACTGTGCAGTCTGCTGGG 180 consensus_4587#1 AGACTGTGCTTGCCATTGTATAATCCTCCCCCACCGGATTCTTTTCTTTAATCTACTTTC 133 **** *** * * * * * * * * * *** ** consensus_4587#0 GGG-GTTGCTAATCCC-ATTGCGTTTTAATCTAGATCTAGCTTTTGTGAGTGAGAGAG 236 consensus_4587#1 GGACATTATTAGTAGAGATTTTGTCATCCGATTGCTCCTGCCTGCTTGATCTG----- 186 ** ** ** * *** ** * * * ** ** * *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||