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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4592#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 874 fasta sequence
[CGCGCGCGGAGGGAGATCGATCGTTCGTTCGTCCTACTCGTATCCATCGATCGGAAGAATCCCAGTCGCCGGCGCCCAAGAAACACACCGAACGCTCAGGTGATCACAGGCATGGCGCCGCCTCTCCTCCGCGGCGTGCCCGTGCTGATCGCGCTCGTCGTCATGGCGGCGGTGGCCTTGCTCCCGGCCGCGGCCGCCGACGACATGGGCGGCGTGGTGGCGTCGGCGTCGGGGCGGAGGAAGATGGCGGCGGCGGCGGCGACGTGCGACGGCGCCGTGGGGGAGTGCGACGTGGACGACGAGGAGGAGGTGGAGGAGATGGCGCTGATGGGGGCGGCGGGCGCCGCCTCCGGGGAGACGCTGATGCGGCGGTCGCTGGCGGCGCGGCGGCCGACGAACAGGTACGTGAGCTACGCGGCGCTGGACGCCAACAAGGTGCCGTGCAACAAGCGCGGCCAGTCCTACTACCAGAACTGCGCCTCGCAGAAGGCCGCCAACCCCTACCGCCGCGGCTGCTCTGCCATCACCCGATGCGCTCGCAATACCAACTGATCATCTCCTCTTCCTCCGCCGTCGCCGCCGTCGTCGCCATCGCCGCCGGCGGCGGCGGCGGTGGCGGCGAATACGCTGCTGTCATAAGTGTATGTACATATCGACTCAATCCAAAGCGTATGTGATGAGCAACTGCTGCTGCTGCTGCTAAAAAATCTTCAGTGCTAAAATATCTATACAAGTGGTAGCATGCATTCTATTATTTGTCATCATCGAATTAATTGCGTTTTCAAATGTTGGGGAAATTTTTTTTTTGAAGAGAATGTACTGAGGATCAGTTCATGCATGTTTCTCGGTTGCACTATTGAAAAAAGAGAGAATT]
[+] EMBL AK070397 [CGCGCGCGGAGGGAGATCGATCGTTCGTTCGTCCTACTCGTATCCATCGATCGGAAGAATCCCAGTCGCCGGCGCCCAAGAAACACACCGAACGCTCAGGTGATCACAGGCATGGCGCCGCCTCTCCTCCGCGGCGTGCCCGTGCTGATCGCGCTCGTCGTCATGGCGGCGGTGGCCTTGCTCCCGGCCGCGGCCGCCGACGACATGGGCGGCGTGGTGGCGTCGGCGTCGGGGCGGAGGAAGATGGCGGCGGCGGCGGCGACGTGCGACGGCGCCGTGGGGGAGTGCGACGTGGACGACGAGGAGGAGGTGGAGGAGATGGCGCTGATGGGGGCGGCGGGCGCCGCCTCCGGGGAGACGCTGATGCGGCGGTCGCTGGCGGCGCGGCGGCCGACGAACAGGTACGTGAGCTACGCGGCGCTGGACGCCAACAAGGTGCCGTGCAACAAGCGCGGCCAGTCCTACTACCAGAACTGCGCCTCGCAGAAGGCCGCCAACCCCTACCGCCGCGGCTGCTCTGCCATCACCCGATGCGCTCGCAATACCAACTGATCATCTCCTCTTCCTCCGCCGTCGCCGCCGTCGTCGCCATCGCCGCCGGCGGCGGCGGCGGTGGCGGCGAATACGCTGCTGTCATAAGTGTATGTACATATCGACTCAATCCAAAGCGTATGTGATGAGCAACTGCTGCTGCTGCTGCTAAAAAATCTTCAGTGCTAAAATATCTATACAAGTGGTAGCATGCATTCTATTATTTGTCATCATCGAATTAATTGCGTTTTCAAATGTTGGGGAAATTTTTTTTTTGAAGAGAATGTACTGAGGATCAGTTCATGCATGTTTCTCGGTTGCACTATTGAAAAAAGAGAGAATT]
consensusID : consensus_4592#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 716 fasta sequence
[CCTCCCCAAATTGCTCCAAACGCCAACCTCCCCAGCCCCCCACCACCTCGGAATTCGGCGTGAATCCATCCCATGGCTCGCCTCGGCATCGGCGTGGCGGCGGCGGCTGCGGCGGTGGTGGCGGCCACGCTGGTGGTCTCCTGCCTGCGCGCGTCGCCTGCCGAGGCCTACAGCGGCGGCGGCCT--GCTACAGCCAGCTGCTCACCACGGCCCACCTCGGCGCCATCTCCTCCTCGTCGTGCGGCGGCAGGCTGGGGCGGCAGTGCTCAGCGGCGGTGGGGGCCGACGGCGGGCTGCTCCGGCGGGCGCTGGCGGCGAGGAAGCCGACGAACCGGTACGTCAGCTACTCGGCGCTGGACGCGAACAAGGTGCCGTGCAACAAGCGAGGCCAGACCTACTACCAGAACTGCGCGTCGCAGCAGGCGGCGAATCCCTACCGCCGCGGCTGCTCCGCCATTACCCGCTGCTCCCGCAACATGAACTGACGATGATGATGATGGTGATCACATCATTGTCCATCCAAATTCCCCAATTCCCAATTCGTCCAATCCATTGATTCGGTCGGTGAATGCATGGATGGATCGATTATATATATATATATATATATATATGTGTGTGTGATGCATTATTATTATATATTGGCTAATTATTAATCGATTAGTTGTATTTATATGCATGCTGCTGATGATGATGATTATATATTTATATATATGTGAT]
[+] EMBL AK107744 [CCTCCCCAAATTGCTCCAAACGCCAACCTCCCCAGCCCCCCACCACCTCGGAATTCGGCGTGAATCCATCCCATGGCTCGCCTCGGCATCGGCGTGGCGGCGGCGGCTGCGGCGGTGGTGGCGGCCACGCTGGTGGTCTCCTGCCTGCGCGCGTCGCCTGCCGAGGCCTACAGCGGCGGCGGCCT GCTACAGCCAGCTGCTCACCACGGCCCACCTCGGCGCCATCTCCTCCTCGTCGTGCGGCGGCAGGCTGGGGCGGCAGTGCTCAGCGGCGGTGGGGGCCGACGGCGGGCTGCTCCGGCGGGCGCTGGCGGCGAGGAAGCCGACGAACCGGTACGTCAGCTACTCGGCGCTGGACGCGAACAAGGTGCCGTGCAACAAGCGAGGCCAGACCTACTACCAGAACTGCGCGTCGCAGCAGGCGGCGAATCCCTACCGCCGCGGCTGCTCCGCCATTACCCGCTGCTCCCGCAACATGAACTGACGATGATGATGATGGTGATCACATCATTGTCCATCCAAATTCCCCAATTCCCAATTCGTCCAATCCATTGATTCGGTCGGTGAATGCATGGATGGATCGATTATATATATATATATATATATATATGTGTGTGTGATGCATTATTATTATATATTGGCTAATTATTAATCGATTAGTTGTATTTATATGCATGCTGCTGATGATGATGATTATATATTTATATATATGTGAT]
[+] EMBL AU162202 [ CCCCAGCCCCCCACCACCTCGGAATTCGGCGTGAATCCATCCCATGGCTCGCCTCGGCATCGGCGTGGCGGCGGCGGCTGCGGCGGTGGTGGCGGCCACGCTGGTGGTCTCCTGCCTGCGCGCGTCGCCTGCCGAGGCCTACAGCGGCGGCGGCCTCGGCTACAGCCAGCTGCTCACCACGGCCCACCTCGGCGCCATCTCCTCCTCGTCGTGCGGCGGCAGGCTGGGGCGGCAGTGCTCAGCGGCGGTGGGGGCCGACGGCGGGCTGCTCCGGCGGGCGCTGGCGGCGAGGAAGCCGACGAACCGGTACGTCAGCTACTCGGCGCTGGACGCGAACAAGGTGCCGTGCAACAAGCGAGGCCAGACCTACTACCAGAACTGCGCGTCGCAGCAGGCGGCGAATCCCTACCGNCGCGGCTGCTCCG CATTACCCGCTG TTCCGCAACATGAACTGACGATGATGATGATGGTGATCACATCATTGTCCATCCAAATT CCCAATTCCCAATTCGTCCAATCCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4592#0 CGCGCGCGGAGGGAGATCGATCGTTCGTTCGTCCTACTCGTATCCATCGATCGGAAGAAT 60
consensus_4592#1 --------------------------------CCTCCCCAAATTGCTCCA-------AAC 21
*** * * ** ** * **
consensus_4592#0 CCCAGTCGCCGGCGCCCAAGAAACACACCGAACGCTCAGGTGATCACAGGC-ATGGCGCC 119
consensus_4592#1 GCCAACCTCCCCAGCCCCCCAC-CACCTCGGAATTCGGCGTGAATCCATCCCATGGC-TC 79
*** * ** **** * *** ** * **** ** * ***** *
consensus_4592#0 GCCTCTCCTCCGCGGCGTGCCCGTGCTGATCGCGCTCGTCGTCATGGCGGCGGTGGCCTT 179
consensus_4592#1 GCCTCGGCATC--GGCGTGGCGGCGGCGGCTGCGGCGGTGGTGGCGGCCACGCTGGTGGT 137
***** * * ****** * * * * *** ** ** *** ** *** *
consensus_4592#0 GCTCCCGGCCGCGGCCGCCGACGACATGGGCGGCGTGGTGGCGTCGGCGTCGGGGCGGAG 239
consensus_4592#1 -CTCCTGCCTGCGCGCGTCGCCTGCCGAGGC----CTACAGCGGCGGCGGCCTGCTACAG 192
**** * * *** ** ** * * *** *** ***** * * **
consensus_4592#0 GAAGATGGCGGCGGCGGCGGCGACGTGCGACGGCGCCGTGGGGGAGTGCGACGTGGACGA 299
consensus_4592#1 CCAGCTGCTCACCACGGC--CCACCT----CGGCGCCAT-------CTCCTCCTCGTCGT 239
** ** * **** * ** * ******* * * * * * **
consensus_4592#0 CGAGGAGGAGGTGGAGGAGATGGCGCTGATGGGGGCGGCGGGCGCCGCCTCCGGGGAGAC 359
consensus_4592#1 GCGGCGGCAGGCTGGGGCGGCAGTGCTCA--GCGGCGGTGGGGGCCGACGGCGGG----- 292
* * *** * ** * * *** * * ***** *** **** * ****
consensus_4592#0 GCTGATGCGGCGGTCGCTGGCGGCGCGGCGGCCGACGAACAGGTACGTGAGCTACGCGGC 419
consensus_4592#1 -CTGCTCCGGCGGGCGCTGGCGGCGAGGAAGCCGACGAACCGGTACGTCAGCTACTCGGC 351
*** * ****** *********** ** ********** ******* ****** ****
consensus_4592#0 GCTGGACGCCAACAAGGTGCCGTGCAACAAGCGCGGCCAGTCCTACTACCAGAACTGCGC 479
consensus_4592#1 GCTGGACGCGAACAAGGTGCCGTGCAACAAGCGAGGCCAGACCTACTACCAGAACTGCGC 411
********* *********************** ****** *******************
consensus_4592#0 CTCGCAGAAGGCCGCCAACCCCTACCGCCGCGGCTGCTCTGCCATCACCCGATGCGCTCG 539
consensus_4592#1 GTCGCAGCAGGCGGCGAATCCCTACCGCCGCGGCTGCTCCGCCATTACCCGCTGCTCCCG 471
****** **** ** ** ******************** ***** ***** *** * **
consensus_4592#0 CAATACCAACTGATCATCTCCTCTTCCTCCGCCGTCGCCGCCGTCGTCGCCATCGCCGCC 599
consensus_4592#1 CAACATGAACTGACGATGA----TGATGATGGTGATCACATCATTGTC--CATC--CAAA 523
*** * ****** ** * * * * * * *** **** *
consensus_4592#0 GGCGGCGGCGGCGGTGGCGGCGAATACGCTGCTGTCATAAGTGTATGTACATATCGACTC 659
consensus_4592#1 TTCCCCAATTCCCAATTCGTCCAATCCATTGATTCGGTCGGTGAATGCATGGATGGA-TC 582
* * * ** * *** * ** * * *** *** * ** ** **
consensus_4592#0 AATCCAAAGCGTATGTG-ATGAGCAACTGCTGCTGCTGCTGCTAAAAAATCTTCAGTGCT 718
consensus_4592#1 GATTATATATATATATATATATATATATGTGTGTGTGATGCATTATTATTATATATTGGC 642
** * *** * ** * ** ** * * * * * * **
consensus_4592#0 AAAATATCTATACAAGTGGTAGCATGCATTCTATTATTTGTCATCATCGAATTAATTGCG 778
consensus_4592#1 TAATTATTAAT-CGATTAGTTGTATTTATATGCATGCTGCTGATGATGA---TGATTATA 698
** *** ** * * * ** * ** ** * * * ** ** * ***
consensus_4592#0 TTTTCAAATGTTGGGGAAATTTTTTTTTTGAAGAGAATGTACTGAGGATCAGTTCATGCA 838
consensus_4592#1 TATTTATATATATGTGAT------------------------------------------ 716
* ** * ** * * **
consensus_4592#0 TGTTTCTCGGTTGCACTATTGAAAAAAGAGAGAATT 874
consensus_4592#1 ------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||