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Oryza sativa
cluster # 4594 cluster # 4594       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4594#0 length = 1369 sequences # 3  

consensusID : consensus_4594#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1369
fasta sequence
                              [TGTAGCTCCCCTCTCTTCACCCACAAGTCCAGCTAGCCTAGCAAAGTTCACATTTTTCTTCTATCTTGCATCATCACACGAAGTGAACTGCGTGATCGTCGGAGACATCGAATCAAAGCTCTCGCCCATTCTGCTTGCTGCCCTGATCTCCTTCAAATTCTAGCCCAAAGAATGGAGGACCAGATGGCTAACCTTCGCTTGACTGACTTCGAGTTCTTCAGGATCATCCTGCCCGGATCCTCCAAAACGAAACTGAAGCTGCCTTACAAGTTCGCGAGGGAGCTTGGGGACCGAGAGCTCCGGGAGGCGAGGCTGCGGGTCGCCGGCGAGGGGCGGCGCCCGTGGGACGTGAAGGTGTTCGACGACGACGTCAGCGGCGACGTGTACCTGGGCCGCGGCTGGCAGGAGTTCGCCCGCGCCCACGACCTGCGTGACGGCCACTTCCTCGTCTTCCGCTACGACGGCGCCGCCGCGTTCACCGTCACCGTCTTCGACGAGACCATGTGCCGCCGCGACTACCGCCGCCACCACGACGCCGCCGAGAGCGGAAGCAGCAGCAGCAGCGACAGCAGTGATGCGGCGGCGGCGGTGGCGACGGCGGCGGCGGAGGGGGTCGGCGACGTGGCGCTGTCGCAGTTCGCCGTGACGCTGCGGCAGTGCAACCTCGAAGACAAGCAGGCGCAGTACTTGAACGTGCCGATGGAGTTCCAGGAGGCGCACGAGTACGCGAGGCGGGAGAAGGTGGTGCTGCGGATGCGCGGGGAGGCATGGACGGTGAGGCTGAAGCACAGCAGGCGGGAGCGCGGCCAGCGCACGGCGTTCCGGTACGGGTGGCACCGGTTCTGCGTCGACAACGGCCTCGCCGTCGGCGACACCTGCTTCTTCCGCGTCCTCCGCGAGGGCGACCTCCGCCGCGGCGGTGCCGCCGACGACCACGTGCTCAAGGTCGCCGTGCGCAAGGCCGACGGCACCACCCTCGAGTGATCGATCTTACTAATTAACTACTGAGATTAATAAATTAATTAGCGCGCTCTCGTAGTCTCGTCTCGTCGTGTGTGTGTGTGTTTAGGTGTTGGTTAGTCGTTCTAAATGGCCCGTATTTGTCTTACGTTAAATCGTCTGGTACTTGATCGGATGGTGTTTGTGGGTGTGCCACTGGCAGATCGACAGGTGGCCGAGCTGTGTACCGAACTGCTTTATTACTCTCTTTCACGAACAAGGCCCTGTGTTTCGCATTCACAACAATGGGAAACAACCCAATCTCGTCATAAGACTGGATGGATTCGTATCGCAAGTGCTCCCTCAGTGTTAATGTAAACCAACTTAATATAAAACGTGATATTTTATATTTAAATAAAAAAAAAAAAAA]

[+] EMBL AK070861             [TGTAGCTCCCCTCTCTTCACCCACAAGTCCAGCTAGCCTAGCAAAGTTCACATTTTTCTTCTATCTTGCATCATCACACGAAGTGAACTGCGTGATCGTCGGAGACATCGAATCAAAGCTCTCGCCCATTCTGCTTGCTGCCCTGATCTCCTTCAAATTCTAGCCCAAAGAATGGAGGACCAGATGGCTAACCTTCGCTTGACTGACTTCGAGTTCTTCAGGATCATCCTGCCCGGATCCTCCAAAACGAAACTGAAGCTGCCTTACAAGTTCGCGAGGGAGCTTGGGGACCGAGAGCTCCGGGAGGCGAGGCTGCGGGTCGCCGGCGAGGGGCGGCGCCCGTGGGACGTGAAGGTGTTCGACGACGACGTCAGCGGCGACGTGTACCTGGGCCGCGGCTGGCAGGAGTTCGCCCGCGCCCACGACCTGCGTGACGGCCACTTCCTCGTCTTCCGCTACGACGGCGCCGCCGCGTTCACCGTCACCGTCTTCGACGAGACCATGTGCCGCCGCGACTACCGCCGCCACCACGACGCCGCCGAGAGCGGAAGCAGCAGCAGCAGCGACAGCAGTGATGCGGCGGCGGCGGTGGCGACGGCGGCGGCGGAGGGGGTCGGCGACGTGGCGCTGTCGCAGTTCGCCGTGACGCTGCGGCAGTGCAACCTCGAAGACAAGCAGGCGCAGTACTTGAACGTGCCGATGGAGTTCCAGGAGGCGCACGAGTACGCGAGGCGGGAGAAGGTGGTGCTGCGGATGCGCGGGGAGGCATGGACGGTGAGGCTGAAGCACAGCAGGCGGGAGCGCGGCCAGCGCACGGCGTTCCGGTACGGGTGGCACCGGTTCTGCGTCGACAACGGCCTCGCCGTCGGCGACACCTGCTTCTTCCGCGTCCTCCGCGAGGGCGACCTCCGCCGCGGCGGTGCCGCCGACGACCACGTGCTCAAGGTCGCCGTGCGCAAGGCCGACGGCACCACCCTCGAGTGATCGATCTTACTAATTAACTACTGAGATTAATAAATTAATTAGCGCGCTCTCGTAGTCTCGTCTCGTCGTGTGTGTGTGTGTTTAGGTGTTGGTTAGTCGTTCTAAATGGCCCGTATTTGTCTTACGTTAAATCGTCTGGTACTTGATCGGATGGTGTTTGTGGGTGTGCCACTGGCAGATCGACAGGTGGCCGAGCTGTGTACCGAACTGCTTTATTACTCTCTTTCACGAACAAGGCCCTGTGTTTCGCATTCACAACAATGGGAAACAACCCAATCTCGTCATAAGACTGGATGGATTCGTATCGCAAGTGCTCCCTCAGTGTTAATGTAAACCAACTTAATATAAAACGTGATATTTTATATTTAAAT              ]
[+] EMBL C99192               [                                                             TATCTTGCATCATCACACGAAG AATCTGCGTGATCGTCGGAGA ATCGAATCAAAGCTCTCGCCCATTCTGCTTGCTGCCCTGATCTCCTTCAAATTCTAGCCCAAAGAATGGAGGACCAGATGGCTAACCTTCGCTTGACTGACTTCGAGTTCTTCAGGATCATCCTGCCCGGNTCCTCCAAAACGAAACTGAAGCTGCCTTACAAGTTCGCGAGGGAGCTTGGGGACCGAGAGCTCCGGGAGGCGAGGCTGCGGGTCGCCGGCGAGGGGCGGCG CCGTGGGACGTGAAGGTNTTCGACGACGACGTCANCGGCGACGTGTACCTGGGCCGCGGCTGGCAng                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU162215             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TTTATTACTCTTTTTCACGAAAAAGGCCCTGTNTTTCGCATTCACAACAATGGGNAACAACCCAATNTCGTCATAAGACTGGATGGATTCGTNTCGCAAGTGCTCCCTCAGTGTTAATGTAAACCAACTTAATATAAAACGTGATATTTTATATTTAAAAAAAAAAAAAAAAAA]


>consensus_4594#0 TGTAGCTCCCCTCTCTTCACCCACAAGTCCAGCTAGCCTAGCAAAGTTCACATTTTTCTT CTATCTTGCATCATCACACGAAGTGAACTGCGTGATCGTCGGAGACATCGAATCAAAGCT CTCGCCCATTCTGCTTGCTGCCCTGATCTCCTTCAAATTCTAGCCCAAAGAATGGAGGAC CAGATGGCTAACCTTCGCTTGACTGACTTCGAGTTCTTCAGGATCATCCTGCCCGGATCC TCCAAAACGAAACTGAAGCTGCCTTACAAGTTCGCGAGGGAGCTTGGGGACCGAGAGCTC CGGGAGGCGAGGCTGCGGGTCGCCGGCGAGGGGCGGCGCCCGTGGGACGTGAAGGTGTTC GACGACGACGTCAGCGGCGACGTGTACCTGGGCCGCGGCTGGCAGGAGTTCGCCCGCGCC CACGACCTGCGTGACGGCCACTTCCTCGTCTTCCGCTACGACGGCGCCGCCGCGTTCACC GTCACCGTCTTCGACGAGACCATGTGCCGCCGCGACTACCGCCGCCACCACGACGCCGCC GAGAGCGGAAGCAGCAGCAGCAGCGACAGCAGTGATGCGGCGGCGGCGGTGGCGACGGCG GCGGCGGAGGGGGTCGGCGACGTGGCGCTGTCGCAGTTCGCCGTGACGCTGCGGCAGTGC AACCTCGAAGACAAGCAGGCGCAGTACTTGAACGTGCCGATGGAGTTCCAGGAGGCGCAC GAGTACGCGAGGCGGGAGAAGGTGGTGCTGCGGATGCGCGGGGAGGCATGGACGGTGAGG CTGAAGCACAGCAGGCGGGAGCGCGGCCAGCGCACGGCGTTCCGGTACGGGTGGCACCGG TTCTGCGTCGACAACGGCCTCGCCGTCGGCGACACCTGCTTCTTCCGCGTCCTCCGCGAG GGCGACCTCCGCCGCGGCGGTGCCGCCGACGACCACGTGCTCAAGGTCGCCGTGCGCAAG GCCGACGGCACCACCCTCGAGTGATCGATCTTACTAATTAACTACTGAGATTAATAAATT AATTAGCGCGCTCTCGTAGTCTCGTCTCGTCGTGTGTGTGTGTGTTTAGGTGTTGGTTAG TCGTTCTAAATGGCCCGTATTTGTCTTACGTTAAATCGTCTGGTACTTGATCGGATGGTG TTTGTGGGTGTGCCACTGGCAGATCGACAGGTGGCCGAGCTGTGTACCGAACTGCTTTAT TACTCTCTTTCACGAACAAGGCCCTGTGTTTCGCATTCACAACAATGGGAAACAACCCAA TCTCGTCATAAGACTGGATGGATTCGTATCGCAAGTGCTCCCTCAGTGTTAATGTAAACC AACTTAATATAAAACGTGATATTTTATATTTAAATAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)