These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4597#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [GGTGCCACGACCACCCCGCGGACAAGGCCCGGGACAAGGCGAAGGGGGCGCACAAGCTCCGGGCCTGCGACGTCGCGCTCAACCACCGCCTCGTGTCCTGGCGCGTCGTCGACAGCGCCGGGGCGTGGGCGGCCGGCACGGGAATCCCGGACTACAAGGGCGCCTCCGCGTCCGCCGTGCTGGCCTACCTCGCCGGGGGGAGCAGCTACCACGAGGACGACGACGACGGGGGCGCCCCCGCCCTGGAAGCCGCCCCGCCGGCCAGCGGCAGCGGCCTCTCTGACCTGTACGACCTCATCGTCGGCCACCACGCCGCCGCCCGCCAAGAGCCGGACACGGCGCGCGCCACTGACATAGAAGTAGCAAACAAGGACGGAATCGAGGAGGAGCCGGATCAAGATGCAGCAGCAGCGTCTGGTGAAGAGGAGGAAGAAGACGACATGGGCTTCTTCATGGTGGGGATCACAATTGCGCTGGAGTTCTCAGATGGGGAGGAAGACTGGATCGTGGTGGAGGAGATCTGATCCGATCTCGGTCAGTTCGATCAAGAATTGCAAAATAAAGAATGCAAGAGAGGTCATTCATCCAATCCAATCATNCATGTGTTGGCTCTTGNATGATCCTTGTCTCTTCCATCTGGTTGGTGGTGTTCATATTATTGGTTGGTTCCAATCGAATGGGGTCCATT] [+] EMBL AU162219 [GGTGCCACGACCACCCCGCGGACAAGGCCCGGGACAAGGCGAAGGGGGCGCACAAGCTCCGGGCCTGCGACGTCGCGCTCAACCACCGCCTCGTGTCCTGGCGCGTCGTCGACAGCGCCGGGGCGTGGGCGGCCGGCACGGGAATCCCGGACTACAAGGGCGCCTCCGCGTCCGCCGTGCTGGCCTACCTCGCCGGGGGGAGCAGCTACCACGAGGACGACGACGACGGGGGCGCCCCCGCCCTGGAAGCCGCCCCGCCGGCCAGCGGCAGCGGCCTCTCTGACCTGTACGACCTCATCGTCGGCCACCACGCCGCCGCCCGCCAAGAGCCGGACACGGCGCGCGCCACTGACATAGAAGTAGCAAACAAGGACGGAATCGAGGAGGAGCCGGATCAAGATGCAGCAGCAGCGTCTGGTGAAGAGGAGGAAGAAGACGACATGGGCTTCTTCATGGTGGGGATCACAATTGCGCTGGAGTTCTCAGATGGGGAGGAAGACTGGATCGTGGTGGAGGAGATCTGATCCGATCTCGGTCAGTTCGATCAAGAATTGCAAAATAAAGAATGCAAGAGAGGTCATTCATCCAATCCAATCATNCATGTGTTGGCTCTTGNATGATCCTTGTCTCTTCCATCTGGTTGGTGGTGTTCATATTATTGGTTGGTTCCAATCGAATGGGGTCCATT] consensusID : consensus_4597#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 370 fasta sequence [TTCCTTCATGGTGGGGATCACAAATTGCGCTGGAGTTCTCAGATGGGGAGGAAGACTGGATCGTGGTGGAGNAGATCTGATCCGATCTCGGTCAGTTCGATCAAGAATTGCAAAATAAAGAATGCAANAGAGGTCATCCATCCAATCCAATCATCCATGTGTTGGCTCTGTATGATCCTGTCTCTCCCATCTGCTGGTGGTGTTCATATTATTGTTGCTCCAGTCGATTGTGTCCATGTGTATATGGTGACTTTTAATCATCGCTTAATTTAGTTGTGGTCAATTAATTGGTCAAGGATTATGATGCATGATTCAAAACCTGAATTTATCTCATGTGTGAATAAAATGGAGAAGGGAACTATTCTTCTTC] [+] EMBL C99397 [TTCCTTCATGGTGGGGATCACAAATTGCGCTGGAGTTCTCAGATGGGGAGGAAGACTGGATCGTGGTGGAGNAGATCTGATCCGATCTCGGTCAGTTCGATCAAGAATTGCAAAATAAAGAATGCAANAGAGGTCATCCATCCAATCCAATCATCCATGTGTTGGCTCTGTATGATCCTGTCTCTCCCATCTGCTGGTGGTGTTCATATTATTGTTGCTCCAGTCGATTGTGTCCATGTGTATATGGTGACTTTTAATCATCGCTTAATTTAGTTGTGGTCAATTAATTGGTCAA ] [+] EMBL AK059372 [ ATCCGATCTCGGTCAGTTCGATCAAGAATTGCAAAATAAAGAATGCAAGAGAGGTCATCCATCCAATCCAATCATCCATGTGTTGGCTCTGTATGATCCTGTCTCTCCCATCTGCTGGTGGTGTTCATATTATTGTTGCTCCAGTCGATTGTGTCCATGTGTATATGGTGACTTTTAATCATCGCTTAATTTAGTTGTGGTCAATTAATTGGTCATGGATTATGATGCATGATTCAAAACCTGAATTTATCTCATGTGTGAATAAAATGGAGAAGGGAACTATTCTTCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4597#0 GGTGCCACGACCACCCCGCGGACAAGGCCCGGGACAAGGCGAAGGGGGCGCACAAGCTCC 60 consensus_4597#1 ------------------------------------------------------------ consensus_4597#0 GGGCCTGCGACGTCGCGCTCAACCACCGCCTCGTGTCCTGGCGCGTCGTCGACAGCGCCG 120 consensus_4597#1 ------------------------------------------------------------ consensus_4597#0 GGGCGTGGGCGGCCGGCACGGGAATCCCGGACTACAAGGGCGCCTCCGCGTCCGCCGTGC 180 consensus_4597#1 ------------------------------------------------------------ consensus_4597#0 TGGCCTACCTCGCCGGGGGGAGCAGCTACCACGAGGACGACGACGACGGGGGCGCCCCCG 240 consensus_4597#1 ------------------------------------------------------------ consensus_4597#0 CCCTGGAAGCCGCCCCGCCGGCCAGCGGCAGCGGCCTCTCTGACCTGTACGACCTCATCG 300 consensus_4597#1 ------------------------------------------------------------ consensus_4597#0 TCGGCCACCACGCCGCCGCCCGCCAAGAGCCGGACACGGCGCGCGCCACTGACATAGAAG 360 consensus_4597#1 ------------------------------------------------------------ consensus_4597#0 TAGCAAACAAGGACGGAATCGAGGAGGAGCCGGATCAAGATGCAGCAGCAGCGTCTGGTG 420 consensus_4597#1 ------------------------------------------------------------ consensus_4597#0 AAGAGGAGGAAGAAGACGACATGGGCTTCTTCATGGTGGGGATCACAA-TTGCGCTGGAG 479 consensus_4597#1 -------------------------TTCCTTCATGGTGGGGATCACAAATTGCGCTGGAG 35 * ******************** *********** consensus_4597#0 TTCTCAGATGGGGAGGAAGACTGGATCGTGGTGGAGGAGATCTGATCCGATCTCGGTCAG 539 consensus_4597#1 TTCTCAGATGGGGAGGAAGACTGGATCGTGGTGGAGNAGATCTGATCCGATCTCGGTCAG 95 ************************************ *********************** consensus_4597#0 TTCGATCAAGAATTGCAAAATAAAGAATGCAAGAGAGGTCATTCATCCAATCCAATCATN 599 consensus_4597#1 TTCGATCAAGAATTGCAAAATAAAGAATGCAANAGAGGTCATCCATCCAATCCAATCATC 155 ******************************** ********* **************** consensus_4597#0 CATGTGTTGGCTCTTGNATGATCCTTGTCTCTTCCATCTGGTTGGTGGTGTTCATATTAT 659 consensus_4597#1 CATGTGTTGGCTCT-GTATGATCCT-GTCTCTCCCATCTG-CTGGTGGTGTTCATATTAT 212 ************** * ******** ****** ******* ****************** consensus_4597#0 TGGTTGGTTCCAATCGAATGGGGTCCATT------------------------------- 688 consensus_4597#1 TGTT--GCTCCAGTCGA-TTGTGTCCATGTGTATATGGTGACTTTTAATCATCGCTTAAT 269 ** * * **** **** * * ****** consensus_4597#0 ------------------------------------------------------------ consensus_4597#1 TTAGTTGTGGTCAATTAATTGGTCAAGGATTATGATGCATGATTCAAAACCTGAATTTAT 329 consensus_4597#0 ----------------------------------------- consensus_4597#1 CTCATGTGTGAATAAAATGGAGAAGGGAACTATTCTTCTTC 370 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||