These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4599#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2404 fasta sequence [ACCCGCGTCCTCTCTCCGTCCGCGGTCCGCCCGAAATTTTCTCCGACGGCGGCGCCTCCGCCCACGATCTCGCGCATCCCTCCCCCTCTCGCCCTCCCAGGACCGCACCTCACCGCCGCCGCCGCTCGCGATAAGCCGTCGCTGCCGATTCCTCCCGATCCCTCAGCCCACCGCCGCCACCCGATCCCTCAACCCACCGCCGCCAGTGAGCCGTGCGCACCTTCTTCTCCGGCCGAGGCGTGCAGTCGCGCCGCCGTCCCTCCGCCTTGCTGATCTCCTCCGGCAACGCGCGGCCGCCTCAAGCACCACCCGCCGTCTCTCCGAATCGCACTCACGCGGTCCCTTTGTCGTTGGAAGAATGCTTAGTTGTCTGGGACAACAAGCTAAATTGGATAAGGCAGGGACATCAATTTCCACCTCGCCGATCTTGCGGCGCCGTTGATACCGTAGAACGTCTATTTCACCTGCGCTGCCCATGTTGTCATCCACGACCACACTGCATCTCCGTCCTCGACCTCCGCCTGTCACTGACGACCATCCAGGAAAGTCTCCCTCGCAGCGAATTTATGTTTACCAGTTACATGTTTCAGTTTATAACTACAAGTACTAAATGATGCTGTTCTAGACAATTTATGTTTCAGTATGTTGTACTTCAATACGTTTTTCTGAAAATGTCAAGTAGGAAACATTCCTTCCCTCAGAAATCACAGAGAATTTGTTCGAAAGTGACTGAAAGAGAGAGTTGAAAATAAGAATGAATCTATTCTTGCTGATTATTATTTTACATTGGCCACATGTATGTCAAAAGGGGAAGTATGGGATCAGATAATTCAACATGTATATATTTACAGTATTTTCACTGTTACACTGTACTCCATTATTTTTGTTTATCTGGTGATTGATTATCAACATTGTTGTTGAGAACTACAGAAGGGGAACAAAGGTTTGTCTTTTCTTTTCTTTCTTGAGAGCAGTTTAATTCCAGCAGGGGCTCTAGAAGTTTGCAGCTCGATCTCGTCTGCAGCCCATCAGGTTCTAATTCATGAGTTTTAGATTTGTTTAGTGGAGTATAAAACTTCATTTCTTCAGGCAAAATGATCAAAATAGCCGCATTGTCTTGCTGGTGTACTTAGATAGTTCGATGCACTTCCTGGAACTCTGTAAAAGGGAAACATGTCGTACCAGTACATGATTGTTTTTGTTTATTTCACAACTATTTAAAGAAAGTTGGTGGATTTTCTTCTGTATTTTTTGGTGGAATGAGAACTTTGACCTAGCTGTCTGAAAATATCTTCTCATTGCTTGTGAGTCAAAATAATGGCATTACAGTTCAACCATTTTGGATGCAAAATTTAATTAGATGATAACAGAAATATTCCTGCTCAGGATAACTAAAATTTCATATTATAGTGATAACGATGCTGAAATTTCTTATATCAACGGAGTAAGTAGTGTGCCTGTTGTTTGTCTGTTTTTGCCTTACTTTCCTGAAATATACTCATGCGAAACAACAGATAATTCTGATATATTGCTCTATAATCATAATATGTCTGCACTACCATGGATGAATAAATTGAGTTTAGGTTTTTTATTGCAACCTTGTATCTTGCATGAGTGGTGTTTTTTATTAACAAGATATTTTGGATCCTTTTTGTGCGTGAGAAGAGATACAGCGGCCATATGATTTTCAACTACTCTTATACGGGACTGCTACTCTTATGCACACCATGTTTATTATATATTTACCTCCAGCATAGTGATAGATCCAATTTTTATCTTGAATGGTGCTTCAAGCA-CCGTATATGTGGGGTTACTTTTTGGCCCTTATTTTTTTAAATCTTCCTTCCTCTTTTCTTTGTATAAAAATATAAGATGCGGCTCGAAATGTATTGTTTTTTATATGGTCATCGGCCTGTCCTTGTTTGGTTTCATATATGAGCTTTTCTCCTCCAACATCTTATTATGTATGGCATTTCCAATAACTTTTTGCAATGTCATCTCGATGGCTTGCATATATATGATATTGACGGGAAGGGCCTGTAACTATAGGGGGTACCATGATTGTGTTGGATTGCTTTGACCTTTACAGAACATTATTTTTCAAGAAAAAGAAATATAGCTGTATTTTGATATCATCTTTTCTTGTATTGCAGGTTCTATATTCCGTAACTCGCCGCGTTTGGTGTCTACGTTTGGACTATATCTTACTGATTTACATTAGGGGCTAACTGGTGTTCAATTTTTCATTTCATTCCTACCTCTAAAGATAGGTACTGTGGCATGGAAGATACATGTTTCTGTGCAAGCTAAATCACACTTATGCATAAATGCATGGTTAATTACTTTATCTCCTCGGTTAATCTACACAACTTTATTGCCAAAAAAAAAAAAAAAAAACTGAGAC] [+] EMBL AK068547 [ACCCGCGTCCTCTCTCCGTCCGCGGTCCGCCCGAAATTTTCTCCGACGGCGGCGCCTCCGCCCACGATCTCGCGCATCCCTCCCCCTCTCGCCCTCCCAGGACCGCACCTCACCGCCGCCGCCGCTCGCGATAAGCCGTCGCTGCCGATTCCTCCCGATCCCTCAGCCCACCGCCGCCACCCGATCCCTCAACCCACCGCCGCCAGTGAGCCGTGCGCACCTTCTTCTCCGGCCGAGGCGTGCAGTCGCGCCGCCGTCCCTCCGCCTTGCTGATCTCCTCCGGCAACGCGCGGCCGCCTCAAGCACCACCCGCCGTCTCTCCGAATCGCACTCACGCGGTCCCTTTGTCGTTGGAAGAATGCTTAGTTGTCTGGGACAACAAGCTAAATTGGATAAGGCAGGGACATCAATTTCCACCTCGCCGATCTTGCGGCGCCGTTGATACCGTAGAACGTCTATTTCACCTGCGCTGCCCATGTTGTCATCCACGACCACACTGCATCTCCGTCCTCGACCTCCGCCTGTCACTGACGACCATCCAGGAAAGTCTCCCTCGCAGCGAATTTATGTTTACCAGTTACATGTTTCAGTTTATAACTACAAGTACTAAATGATGCTGTTCTAGACAATTTATGTTTCAGTATGTTGTACTTCAATACGTTTTTCTGAAAATGTCAAGTAGGAAACATTCCTTCCCTCAGAAATCACAGAGAATTTGTTCGAAAGTGACTGAAAGAGAGAGTTGAAAATAAGAATGAATCTATTCTTGCTGATTATTATTTTACATTGGCCACATGTATGTCAAAAGGGGAAGTATGGGATCAGATAATTCAACATGTATATATTTACAGTATTTTCACTGTTACACTGTACTCCATTATTTTTGTTTATCTGGTGATTGATTATCAACATTGTTGTTGAGAACTACAGAAGGGGAACAAAGGTTTGTCTTTTCTTTTCTTTCTTGAGAGCAGTTTAATTCCAGCAGGGGCTCTAGAAGTTTGCAGCTCGATCTCGTCTGCAGCCCATCAGGTTCTAATTCATGAGTTTTAGATTTGTTTAGTGGAGTATAAAACTTCATTTCTTCAGGCAAAATGATCAAAATAGCCGCATTGTCTTGCTGGTGTACTTAGATAGTTCGATGCACTTCCTGGAACTCTGTAAAAGGGAAACATGTCGTACCAGTACATGATTGTTTTTGTTTATTTCACAACTATTTAAAGAAAGTTGGTGGATTTTCTTCTGTATTTTTTGGTGGAATGAGAACTTTGACCTAGCTGTCTGAAAATATCTTCTCATTGCTTGTGAGTCAAAATAATGGCATTACAGTTCAACCATTTTGGATGCAAAATTTAATTAGATGATAACAGAAATATTCCTGCTCAGGATAACTAAAATTTCATATTATAGTGATAACGATGCTGAAATTTCTTATATCAACGGAGTAAGTAGTGTGCCTGTTGTTTGTCTGTTTTTGCCTTACTTTCCTGAAATATACTCATGCGAAACAACAGATAATTCTGATATATTGCTCTATAATCATAATATGTCTGCACTACCATGGATGAATAAATTGAGTTTAGGTTTTTTATTGCAACCTTGTATCTTGCATGAGTGGTGTTTTTTATTAACAAGATATTTTGGATCCTTTTTGTGCGTGAGAAGAGATACAGCGGCCATATGATTTTCAACTACTCTTATACGGGACTGCTACTCTTATGCACACCATGTTTATTATATATTTACCTCCAGCATAGTGATAGATCCAATTTTTATCTTGAATGGTGCTTCAAGCA CCGTATATGTGGGGTTACTTTTTGGCCCTTATTTTTTTAAATCTTCCTTCCTCTTTTCTTTGTATAAAAATATAAGATGCGGCTCGAAATGTATTGTTTTTTATATGGTCATCGGCCTGTCCTTGTTTGGTTTCATATATGAGCTTTTCTCCTCCAACATCTTATTATGTATGGCATTTCCAATAACTTTTTGCAATGTCATCTCGATGGCTTGCATATATATGATATTGACGGGAAGGGCCTGTAACTATAGGGGGTACCATGATTGTGTTGGATTGCTTTGACCTTTACAGAACATTATTTTTCAAGAAAAAGAAATATAGCTGTATTTTGATATCATCTTTTCTTGTATTGCAGGTTCTATATTCCGTAACTCGCCGCGTTTGGTGTCTACGTTTGGACTATATCTTACTGATTTACATTAGGGGCTAACTGGTGTTCAATTTTTCATTTCATTCCTACCTCTAAAGATAGGTACTGTGGCATGGAAGATACATGTTTCTGTGCAAGCTAAATCACACTTATGCATAAATGCATGGTTAATTACTTTATCTCCT ] [-] EMBL CF326370 [ TATATTTACCTCCAGCATAGTGATAGATCCAATTTTTATCTTGAATGGTGCTTCAAGCACCCGTATATGTGGGGTTATTTTTTGGCCCTTATTTTTTTAAATCTTCCTTCCTCTTTTCTTTGTATAAAAATATAAGATGCGGCTCGAAATGTATTGTTTTTTATATGGTCATCGGCCTGTCCTTGTTTGGTTTCATATATGAGCTTTTCTCCTCCAACATCTTATTATGTATGGCATTTCCAATAACTTTTTGCAATGTCATCTCGATGGCTTGCATATATATGATATTGACGGGAAGGGCCTGTAACTATAGGGGGTACCATGATTGTGTTGGATTGCTTTGACCTTTACAGAACATTATTTTTCAAGAAAAAGAAATATAGCTGTATTTTGATATCATCTTTTCTTGTATTGCAGGTTCTATATTCCGTAACTCGCCGCGTTTGGTGTCTACGTTTGGACTATATCTTACTGATTTACATTAGGGGCTAACTGGTGTTCAATTTTTCATTTCATTCCTACCTATAAAGATAGGTACTGTGGCATGGAAGATACATGTTTCTGTGCAAGCTAAATCACACTTATGCATAAATGCATGGTTAATTACTTTATCTCCTCGGTTAATCTACACAACTTTATTGCCAAAAAAAAAAAAAAAAAACTGAGAC] consensusID : consensus_4599#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence [CGGCACGAGCGCGCATCCCTCCCCCNCTCGCCCTCCCNGGACCGCACCTCACCGCCGCCGCCGCTCGCGATAAGCCGTCGCTGCCGATTCCTCCCGATCCCTCAGCCCACCGCCGCCACCCGATCCCTCAACCCACCGCCGCCAGTGAGCCGTGCGCACCTTCTTCTCCGGCTGAGGCGTGCAGTCGCGCCGCCGTCCCTCCGCCTTGCTGATCTCCTCCGGCAACGCGCGGCCGCCTCAAGCACCACCCGCCGTCTCTCCGAATCGCACTCACGCGGTCCCTTTGTCGTTGGAAGAATGCTTAGTTGTCTGGGACAACAAGCTAAATTGGATAAGGCAGGGACATCAATTTCCACCTCGCCGATCTTGCGGCGCCGTTGATACCGTAGAACGTCTATTTCACCTGCGCTGCCCATGTTGTCATCCACGACCACACTGCATCTCCGTCCTCGACCTCCGCCTGTCACTGACGACCATCCAGGTTCTATATTCCGTAACTCGCCGCGTTTGGTGTCTACGTTTGGACTATATCTTACTGATTTACATTANGGGCT] [+] EMBL AA753096 [CGGCACGAGCGCGCATCCCTCCCCCNCTCGCCCTCCCNGGACCGCACCTCACCGCCGCCGCCGCTCGCGATAAGCCGTCGCTGCCGATTCCTCCCGATCCCTCAGCCCACCGCCGCCACCCGATCCCTCAACCCACCGCCGCCAGTGAGCCGTGCGCACCTTCTTCTCCGGCTGAGGCGTGCAGTCGCGCCGCCGTCCCTCCGCCTTGCTGATCTCCTCCGGCAACGCGCGGCCGCCTCAAGCACCACCCGCCGTCTCTCCGAATCGCACTCACGCGGTCCCTTTGTCGTTGGAAGAATGCTTAGTTGTCTGGGACAACAAGCTAAATTGGATAAGGCAGGGACATCAATTTCCACCTCGCCGATCTTGCGGCGCCGTTGATACCGTAGAACGTCTATTTCACCTGCGCTGCCCATGTTGTCATCCACGACCACACTGCATCTCCGTCCTCGACCTCCGCCTGTCACTGACGACCATCCAGGTTCTATATTCCGTAACTCGCCGCGTTTGGTGTCTACGTTTGGACTATATCTTACTGATTTACATTANGGGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4599#0 ACCCGCGTCCTCTCTCCGTCCGCGGTCCGCCCGAAATTTTCTCCGACGGCGGCGCCTCCG 60 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 CCCACGATCTCGCGCATCCCTCCCCCTCTCGCCCTCCCAGGACCGCACCTCACCGCCGCC 120 consensus_4599#1 -CGGCACGAGCGCGCATCCCTCCCCCNCTCGCCCTCCCNGGACCGCACCTCACCGCCGCC 59 * * **************** *********** ********************* consensus_4599#0 GCCGCTCGCGATAAGCCGTCGCTGCCGATTCCTCCCGATCCCTCAGCCCACCGCCGCCAC 180 consensus_4599#1 GCCGCTCGCGATAAGCCGTCGCTGCCGATTCCTCCCGATCCCTCAGCCCACCGCCGCCAC 119 ************************************************************ consensus_4599#0 CCGATCCCTCAACCCACCGCCGCCAGTGAGCCGTGCGCACCTTCTTCTCCGGCCGAGGCG 240 consensus_4599#1 CCGATCCCTCAACCCACCGCCGCCAGTGAGCCGTGCGCACCTTCTTCTCCGGCTGAGGCG 179 ***************************************************** ****** consensus_4599#0 TGCAGTCGCGCCGCCGTCCCTCCGCCTTGCTGATCTCCTCCGGCAACGCGCGGCCGCCTC 300 consensus_4599#1 TGCAGTCGCGCCGCCGTCCCTCCGCCTTGCTGATCTCCTCCGGCAACGCGCGGCCGCCTC 239 ************************************************************ consensus_4599#0 AAGCACCACCCGCCGTCTCTCCGAATCGCACTCACGCGGTCCCTTTGTCGTTGGAAGAAT 360 consensus_4599#1 AAGCACCACCCGCCGTCTCTCCGAATCGCACTCACGCGGTCCCTTTGTCGTTGGAAGAAT 299 ************************************************************ consensus_4599#0 GCTTAGTTGTCTGGGACAACAAGCTAAATTGGATAAGGCAGGGACATCAATTTCCACCTC 420 consensus_4599#1 GCTTAGTTGTCTGGGACAACAAGCTAAATTGGATAAGGCAGGGACATCAATTTCCACCTC 359 ************************************************************ consensus_4599#0 GCCGATCTTGCGGCGCCGTTGATACCGTAGAACGTCTATTTCACCTGCGCTGCCCATGTT 480 consensus_4599#1 GCCGATCTTGCGGCGCCGTTGATACCGTAGAACGTCTATTTCACCTGCGCTGCCCATGTT 419 ************************************************************ consensus_4599#0 GTCATCCACGACCACACTGCATCTCCGTCCTCGACCTCCGCCTGTCACTGACGACCATCC 540 consensus_4599#1 GTCATCCACGACCACACTGCATCTCCGTCCTCGACCTCCGCCTGTCACTGACGACCATCC 479 ************************************************************ consensus_4599#0 AGGAAAGTCTCCCTCGCAGCGAATTTATGTTTACCAGTTACATGTTTCAGTTTATAACTA 600 consensus_4599#1 AGGTTC-TATATTCCGTAACTCGCC-GCGTTTGGTGTCTACGT---TTGGACTATATCTT 534 *** * * ** * * **** *** * * * **** ** consensus_4599#0 CAAGTACTAAATGATGCTGTTCTAGACAATTTATGTTTCAGTATGTTGTACTTCAATACG 660 consensus_4599#1 ACTGATTTACATTANGGGCT---------------------------------------- 554 * ** ** * * * consensus_4599#0 TTTTTCTGAAAATGTCAAGTAGGAAACATTCCTTCCCTCAGAAATCACAGAGAATTTGTT 720 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 CGAAAGTGACTGAAAGAGAGAGTTGAAAATAAGAATGAATCTATTCTTGCTGATTATTAT 780 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 TTTACATTGGCCACATGTATGTCAAAAGGGGAAGTATGGGATCAGATAATTCAACATGTA 840 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 TATATTTACAGTATTTTCACTGTTACACTGTACTCCATTATTTTTGTTTATCTGGTGATT 900 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 GATTATCAACATTGTTGTTGAGAACTACAGAAGGGGAACAAAGGTTTGTCTTTTCTTTTC 960 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 TTTCTTGAGAGCAGTTTAATTCCAGCAGGGGCTCTAGAAGTTTGCAGCTCGATCTCGTCT 1020 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 GCAGCCCATCAGGTTCTAATTCATGAGTTTTAGATTTGTTTAGTGGAGTATAAAACTTCA 1080 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 TTTCTTCAGGCAAAATGATCAAAATAGCCGCATTGTCTTGCTGGTGTACTTAGATAGTTC 1140 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 GATGCACTTCCTGGAACTCTGTAAAAGGGAAACATGTCGTACCAGTACATGATTGTTTTT 1200 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 GTTTATTTCACAACTATTTAAAGAAAGTTGGTGGATTTTCTTCTGTATTTTTTGGTGGAA 1260 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 TGAGAACTTTGACCTAGCTGTCTGAAAATATCTTCTCATTGCTTGTGAGTCAAAATAATG 1320 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 GCATTACAGTTCAACCATTTTGGATGCAAAATTTAATTAGATGATAACAGAAATATTCCT 1380 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 GCTCAGGATAACTAAAATTTCATATTATAGTGATAACGATGCTGAAATTTCTTATATCAA 1440 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 CGGAGTAAGTAGTGTGCCTGTTGTTTGTCTGTTTTTGCCTTACTTTCCTGAAATATACTC 1500 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 ATGCGAAACAACAGATAATTCTGATATATTGCTCTATAATCATAATATGTCTGCACTACC 1560 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 ATGGATGAATAAATTGAGTTTAGGTTTTTTATTGCAACCTTGTATCTTGCATGAGTGGTG 1620 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 TTTTTTATTAACAAGATATTTTGGATCCTTTTTGTGCGTGAGAAGAGATACAGCGGCCAT 1680 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 ATGATTTTCAACTACTCTTATACGGGACTGCTACTCTTATGCACACCATGTTTATTATAT 1740 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 ATTTACCTCCAGCATAGTGATAGATCCAATTTTTATCTTGAATGGTGCTTCAAGCACCGT 1800 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 ATATGTGGGGTTACTTTTTGGCCCTTATTTTTTTAAATCTTCCTTCCTCTTTTCTTTGTA 1860 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 TAAAAATATAAGATGCGGCTCGAAATGTATTGTTTTTTATATGGTCATCGGCCTGTCCTT 1920 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 GTTTGGTTTCATATATGAGCTTTTCTCCTCCAACATCTTATTATGTATGGCATTTCCAAT 1980 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 AACTTTTTGCAATGTCATCTCGATGGCTTGCATATATATGATATTGACGGGAAGGGCCTG 2040 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 TAACTATAGGGGGTACCATGATTGTGTTGGATTGCTTTGACCTTTACAGAACATTATTTT 2100 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 TCAAGAAAAAGAAATATAGCTGTATTTTGATATCATCTTTTCTTGTATTGCAGGTTCTAT 2160 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 ATTCCGTAACTCGCCGCGTTTGGTGTCTACGTTTGGACTATATCTTACTGATTTACATTA 2220 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 GGGGCTAACTGGTGTTCAATTTTTCATTTCATTCCTACCTCTAAAGATAGGTACTGTGGC 2280 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 ATGGAAGATACATGTTTCTGTGCAAGCTAAATCACACTTATGCATAAATGCATGGTTAAT 2340 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 TACTTTATCTCCTCGGTTAATCTACACAACTTTATTGCCAAAAAAAAAAAAAAAAAACTG 2400 consensus_4599#1 ------------------------------------------------------------ consensus_4599#0 AGAC 2404 consensus_4599#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||