These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4606#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1633 fasta sequence [TTTGATTATTCGTTCCGGTGTGCGCGAAAGCGGGGAAGGAGCGGGGTACGCATCTGTACCTGTACGGGATCCCGGCGAGATTCAACCTTGCAACCTCATGTCCTTGTGTTCATGTGCTCGTACGATACGAAAATAGAATTCTGATACGTCTGTATAATATAGGGGTGAGAGGGTGCCACTGCCAACTGGTCACCTAGCCCAGAAACCCGGCAAGATGCAGCGCGCGGCGGCGGCCTCGCGCGCCACGGCATGGAGCACGGCACGGCACGGCGCCGCCCGCGTCACCGCCTCCGCCTCCTTCTCCGACGGCGGCGGCATCGTCGCCGGTGCGGCGCTGCCGCTCCGTGTTCGCGGCGGCCAGCTCATGTCCCTGCCGCTGCTGTCGGGTGGCAGGGCGGTCACGGCGAGGGTGGCGGCGGCGGAGGCGCCGTTGCCGGCGGACGACGCCGACGCGGCGGCTGGGCGGGAGAGAGGCGCACTCGCGGAGACGGCGCAGCTGGGCGCCATGATCGTGGCGTGGTACCTCCTCAACATCTACTTCAACATCTACAACAAGCAGGTGCTGCAGCCATTGCCGTTCCCCTACACCATCACCGCCTTCCAGCTCGCGTTCGGCTCCTTCGTCATCTTCCTCATGTGGGCGCTCAAGCTTCATCCCGCGCCCAGAATCTCCATTTCACAGCTGGCCAAGATCGCGCCGCTCGCCGCCGGGCACATGCTGGGCACGGTGTTCACCAACATGAGCCTGAGCAAGGTCGCCGTCTCCTTCACCCACACCATCAAGGCGTCCGAGCCCTTCTTCACCGTCCTCCTCTCCGCCTTCTTCCTCGGCGAGACGCCTTCGCTGCTGGTGCTGGGCTCCCTCGTGCCGATCGTCGGCGGCGTCGCCTTGGCATCGTTGACTGAACTCTCTTTCAACTGGATTGGGTTCTGGAGTGCGATGGCATCGAATCTTCTATACCAATCAAGAAATGTGCTCAGCAAGAAGCTTCTTGGCGGCGAAGAGGAAGCGTTGGATGACATAAACCTCTTCTCAATACTCACTATACTGTCATTTCTGCTGTCTTTGCCTCTGATGCTGTTCTCAGAAGGGGTCAAGTTCAGCCCAGGATACCTCCGGAGCACTGGCCTTAACCTCCAAGAGCTGTGTGTAAGAGCAGCACTAGCTGGCTTTTGCTTCCATGGCTACCAGAAGCTCTCCTACTTGATCCTGGCCAGAGTGTCACCTGTCACCCACTCTGTCGCCAACTGCGTCAAGCGTGTGGTCGTCATCGTGGCGTCTGTTCTCTTCTTCAGAACCCCAATTTCACCTGTCAATGCACTAGGAACTGGTGTTGCATTGGGAGGAGTTTTCCTGTATTCCAGGTTGAAGAGAACAAAACCAAAGAATGCCTGAGAAGAGAGGACACGCTTAATTACAGTTCTCGCAGTTTTTGTTTTGATTTGGGATACATAGATTAGGCTTGTACATCGACGAAGAAAATGAGTTGGGTTCGGTTTTAGCACCGATTGTACTACACGACCTACAGTCTCATTTTTCACAAAATTGTAAGAACATTGCTGAATATTCTCAGATCTCGAGAGAAATTCATTAGTGTCCAGGCGCAAAATCAATAAAGCTATCACTTGAGTG] [+] EMBL AK060343 [TTTGATTATTCGTTCCGGTGTGCGCGAAAGCGGGGAAGGAGCGGGGTACGCATCTGTACCTGTACGGGATCCCGGCGAGATTCAACCTTGCAACCTCATGTCCTTGTGTTCATGTGCTCGTACGATACGAAAATAGAATTCTGATACGTCTGTATAATATAGGGGTGAGAGGGTGCCACTGCCAACTGGTCACCTAGCCCAGAAACCCGGCAAGATGCAGCGCGCGGCGGCGGCCTCGCGCGCCACGGCATGGAGCACGGCACGGCACGGCGCCGCCCGCGTCACCGCCTCCGCCTCCTTCTCCGACGGCGGCGGCATCGTCGCCGGTGCGGCGCTGCCGCTCCGTGTTCGCGGCGGCCAGCTCATGTCCCTGCCGCTGCTGTCGGGTGGCAGGGCGGTCACGGCGAGGGTGGCGGCGGCGGAGGCGCCGTTGCCGGCGGACGACGCCGACGCGGCGGCTGGGCGGGAGAGAGGCGCACTCGCGGAGACGGCGCAGCTGGGCGCCATGATCGTGGCGTGGTACCTCCTCAACATCTACTTCAACATCTACAACAAGCAGGTGCTGCAGCCATTGCCGTTCCCCTACACCATCACCGCCTTCCAGCTCGCGTTCGGCTCCTTCGTCATCTTCCTCATGTGGGCGCTCAAGCTTCATCCCGCGCCCAGAATCTCCATTTCACAGCTGGCCAAGATCGCGCCGCTCGCCGCCGGGCACATGCTGGGCACGGTGTTCACCAACATGAGCCTGAGCAAGGTCGCCGTCTCCTTCACCCACACCATCAAGGCGTCCGAGCCCTTCTTCACCGTCCTCCTCTCCGCCTTCTTCCTCGGCGAGACGCCTTCGCTGCTGGTGCTGGGCTCCCTCGTGCCGATCGTCGGCGGCGTCGCCTTGGCATCGTTGACTGAACTCTCTTTCAACTGGATTGGGTTCTGGAGTGCGATGGCATCGAATCTTCTATACCAATCAAGAAATGTGCTCAGCAAGAAGCTTCTTGGCGGCGAAGAGGAAGCGTTGGATGACATAAACCTCTTCTCAATACTCACTATACTGTCATTTCTGCTGTCTTTGCCTCTGATGCTGTTCTCAGAAGGGGTCAAGTTCAGCCCAGGATACCTCCGGAGCACTGGCCTTAACCTCCAAGAGCTGTGTGTAAGAGCAGCACTAGCTGGCTTTTGCTTCCATGGCTACCAGAAGCTCTCCTACTTGATCCTGGCCAGAGTGTCACCTGTCACCCACTCTGTCGCCAACTGCGTCAAGCGTGTGGTCGTCATCGTGGCGTCTGTTCTCTTCTTCAGAACCCCAATTTCACCTGTCAATGCACTAGGAACTGGTGTTGCATTGGGAGGAGTTTTCCTGTATTCCAGGTTGAAGAGAACAAAACCAAAGAATGCCTGAGAAGAGAGGACACGCTTAATTACAGTTCTCGCAGTTTTTGTTTTGATTTGGGATACATAGATTAGGCTTGTACATCGACGAAGAAAATGAGTTGGGTTCGGTTTTAGCACCGATTGTACTACACGACCTACAGTCTCATTTTTCACAAAATTGTAAGAACATTGCTGAATATTCTCAGATCTCGAGAGAAATTCATTAGTGTCCAGGCGCAAAATCAATAAAGCTATCACTTGAGTG] [+] EMBL CF326520 [ AGACGGCGCAGCTGGGCGCCATGATCGTGGCGTGGTACCTCCTCAACATCTACTTCAACATCTACAACAAGCAGGTGCTGCAGCCATTGCCGTTCCCCTACACCATCACCGCCTTCCAGCTCGCGTTCGGTTTCTTCGTCATCTTCCTCATGTGGGCGCTCAAGCTTCATCCCGCGCCCAGAATCTCCATTTCACAGCTGGCCAAGATCGCGCCGCTCGCCGCCGGGCACATGCTGGGCACGGTGTTCACCAACATGAGCCTGAGCAAGGTCGCCGTCTCCTTCACCCACACCATCAAGGCGTCCGAGCCCTTCTTCACCGTCCTCCTCTCCGCCTTCTTCCTCGGCGAGACGCCTTCGCTGCTGGTGCTGGGCTCCCTCGTGCCGATCGTCGGCGGCGTCGCCTTGGCATCGTT ] consensusID : consensus_4606#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence [CTACACCATCACCGCCTTCCAGCTCGCGTTCGGCTCCTTCGTCATCTTCCTCATGTGGGCGCTCAAGCTTTATCCCGCGCCCAGAATCTCCATTTTCACAGCTGGCCAAGATCGCSCCGCTYGCCGSCGGGSACATKCYGGGGCACVGTGTTCMMCAACMTKAGGSCTKGGSRAARGTYGCSCGTCTTCTTTHAMCCACACMCAWYAAGGGGTKCCGARCCCTTTTTTTAACGTGTCTCTCTCTCNCSVSTTTYTTTCCTCYSGGGGAGACAGCCYTTCTBCTCKCTYGGTGCTCKGGSK] [+] EMBL AA752595 [CTACACCATCACCGCCTTCCAGCTCGCGTTCGGCTCCTTCGTCATCTTCCTCATGTGGGCGCTCAAGCTTTATCCCGCGCCCAGAATCTCCATTTTCACAGCTGGCCAAGATCGCSCCGCTYGCCGSCGGGSACATKCYGGGGCACVGTGTTCMMCAACMTKAGGSCTKGGSRAARGTYGCSCGTCTTCTTTHAMCCACACMCAWYAAGGGGTKCCGARCCCTTTTTTTAACGTGTCTCTCTCTCNCSVSTTTYTTTCCTCYSGGGGAGACAGCCYTTCTBCTCKCTYGGTGCTCKGGSK] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4606#0 TTTGATTATTCGTTCCGGTGTGCGCGAAAGCGGGGAAGGAGCGGGGTACGCATCTGTACC 60 consensus_4606#1 ------------------------------------------------------------ consensus_4606#0 TGTACGGGATCCCGGCGAGATTCAACCTTGCAACCTCATGTCCTTGTGTTCATGTGCTCG 120 consensus_4606#1 ------------------------------------------------------------ consensus_4606#0 TACGATACGAAAATAGAATTCTGATACGTCTGTATAATATAGGGGTGAGAGGGTGCCACT 180 consensus_4606#1 ------------------------------------------------------------ consensus_4606#0 GCCAACTGGTCACCTAGCCCAGAAACCCGGCAAGATGCAGCGCGCGGCGGCGGCCTCGCG 240 consensus_4606#1 ------------------------------------------------------------ consensus_4606#0 CGCCACGGCATGGAGCACGGCACGGCACGGCGCCGCCCGCGTCACCGCCTCCGCCTCCTT 300 consensus_4606#1 ------------------------------------------------------------ consensus_4606#0 CTCCGACGGCGGCGGCATCGTCGCCGGTGCGGCGCTGCCGCTCCGTGTTCGCGGCGGCCA 360 consensus_4606#1 ------------------------------------------------------------ consensus_4606#0 GCTCATGTCCCTGCCGCTGCTGTCGGGTGGCAGGGCGGTCACGGCGAGGGTGGCGGCGGC 420 consensus_4606#1 ------------------------------------------------------------ consensus_4606#0 GGAGGCGCCGTTGCCGGCGGACGACGCCGACGCGGCGGCTGGGCGGGAGAGAGGCGCACT 480 consensus_4606#1 ------------------------------------------------------------ consensus_4606#0 CGCGGAGACGGCGCAGCTGGGCGCCATGATCGTGGCGTGGTACCTCCTCAACATCTACTT 540 consensus_4606#1 ------------------------------------------------------------ consensus_4606#0 CAACATCTACAACAAGCAGGTGCTGCAGCCATTGCCGTTCCCCTACACCATCACCGCCTT 600 consensus_4606#1 ------------------------------------------CTACACCATCACCGCCTT 18 ****************** consensus_4606#0 CCAGCTCGCGTTCGGCTCCTTCGTCATCTTCCTCATGTGGGCGCTCAAGCTTCATCCCGC 660 consensus_4606#1 CCAGCTCGCGTTCGGCTCCTTCGTCATCTTCCTCATGTGGGCGCTCAAGCTTTATCCCGC 78 **************************************************** ******* consensus_4606#0 GCCCAGAATCTCCATTT-CACAGCTGGCCAAGATCGCGCCGCTCGCCGCCGGGCACATGC 719 consensus_4606#1 GCCCAGAATCTCCATTTTCACAGCTGGCCAAGATCGCSCCGCTYGCCGSCGGGSACATKC 138 ***************** ******************* ***** **** **** **** * consensus_4606#0 TGGG-CACGGTGTTCACCAACATGAG--CCTGAGCAAGGTCGCC-GTCTCCTT-CACCCA 774 consensus_4606#1 YGGGGCACVGTGTTCMMCAACMTKAGGSCTKGGSRAARGTYGCSCGTCTTCTTTHAMCCA 198 *** *** ****** **** * ** * * ** ** ** **** *** * *** consensus_4606#0 CACC-ATCAAGGCGT-CCGAGCCCTTCTTC-ACCGT----CCTCCTCTCCGCCTTCTTCC 827 consensus_4606#1 CACMCAWYAAGGGGTKCCGARCCCTTTTTTTAACGTGTCTCTCTCTCNCSVSTTTYTTTC 258 *** * **** ** **** ***** ** * *** * *** * ** ** * consensus_4606#0 ---TCGGCGAGACGCCTTCGCTGCTGGTGCTGGGCTCCCTCGTGCCGATCGTCGGCGGCG 884 consensus_4606#1 CTCYSGGGGAGACAGCCYTTCTBCTCKCTYGGTGCTCKGGSK------------------ 300 ** ***** * ** ** * **** consensus_4606#0 TCGCCTTGGCATCGTTGACTGAACTCTCTTTCAACTGGATTGGGTTCTGGAGTGCGATGG 944 consensus_4606#1 ------------------------------------------------------------ consensus_4606#0 CATCGAATCTTCTATACCAATCAAGAAATGTGCTCAGCAAGAAGCTTCTTGGCGGCGAAG 1004 consensus_4606#1 ------------------------------------------------------------ consensus_4606#0 AGGAAGCGTTGGATGACATAAACCTCTTCTCAATACTCACTATACTGTCATTTCTGCTGT 1064 consensus_4606#1 ------------------------------------------------------------ consensus_4606#0 CTTTGCCTCTGATGCTGTTCTCAGAAGGGGTCAAGTTCAGCCCAGGATACCTCCGGAGCA 1124 consensus_4606#1 ------------------------------------------------------------ consensus_4606#0 CTGGCCTTAACCTCCAAGAGCTGTGTGTAAGAGCAGCACTAGCTGGCTTTTGCTTCCATG 1184 consensus_4606#1 ------------------------------------------------------------ consensus_4606#0 GCTACCAGAAGCTCTCCTACTTGATCCTGGCCAGAGTGTCACCTGTCACCCACTCTGTCG 1244 consensus_4606#1 ------------------------------------------------------------ consensus_4606#0 CCAACTGCGTCAAGCGTGTGGTCGTCATCGTGGCGTCTGTTCTCTTCTTCAGAACCCCAA 1304 consensus_4606#1 ------------------------------------------------------------ consensus_4606#0 TTTCACCTGTCAATGCACTAGGAACTGGTGTTGCATTGGGAGGAGTTTTCCTGTATTCCA 1364 consensus_4606#1 ------------------------------------------------------------ consensus_4606#0 GGTTGAAGAGAACAAAACCAAAGAATGCCTGAGAAGAGAGGACACGCTTAATTACAGTTC 1424 consensus_4606#1 ------------------------------------------------------------ consensus_4606#0 TCGCAGTTTTTGTTTTGATTTGGGATACATAGATTAGGCTTGTACATCGACGAAGAAAAT 1484 consensus_4606#1 ------------------------------------------------------------ consensus_4606#0 GAGTTGGGTTCGGTTTTAGCACCGATTGTACTACACGACCTACAGTCTCATTTTTCACAA 1544 consensus_4606#1 ------------------------------------------------------------ consensus_4606#0 AATTGTAAGAACATTGCTGAATATTCTCAGATCTCGAGAGAAATTCATTAGTGTCCAGGC 1604 consensus_4606#1 ------------------------------------------------------------ consensus_4606#0 GCAAAATCAATAAAGCTATCACTTGAGTG 1633 consensus_4606#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||