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Oryza sativa
cluster # 4609 cluster # 4609       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4609#0 length = 1541 sequences # 3  

consensusID : consensus_4609#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1541
fasta sequence
                              [CCTCCCGCTGCTCCCGTTGCGGCGGTCGCCGTCGCCGCCGACGATGACGAGCTTGGAGGCGGCCGCACGCCCGAGCAGCCGCCGCGTGGCACCGTGCGACCCGCGGGGACGCCCTCGGCTTCCGCCATGGCGGCTCATCCTTTCCCCCTCCCCTTCCTCCCGCAGGCTTTGCACTCTAATTTCTAGACAACTTCCCATTTGCAATGCACAATCATATACGGATAATCTGTGGTTAGCCAGTGGTAATGCTCAAAGCTCCGCTGCTGTTCGGTCAAGGTTGCTTGCTGCAGAAAGAGAGGAAGCAAAAGCTGTGCTATCACTATTTTTAAGACAGAAAGGTTTGAGAAGTATACTGGCTGCACGAATTGCCAATAAGGCAGATGGTTTCATTGAACACCTAGTTTCAAAGCTCCACATTACTTACAGATCACGATATGCTGAAGGAAGGGAGCTCAGCACACCGGAGATTAGAGATGCTTTGATTCCATATCTGGAAGCCCTTTCTAAAGAACATGGATCATGAAGAGATCAAGAATGTCGTGCGGAAATTCCCAGCATTTGCATATTACAATGTGGATCGCAAAATAAAACCTCTGGTGGCGCTGCTACTTGAGCTTGGTGTGCCAAGGTCAAACATACCAGGAATCATCAAGAAGAGACCTCAGCTATGTGGAATCAGCCTGTCAGATAATCTGAAACCTATGATGACCTATTTGGAAAACGTGGGTATCAACAAAGATAAGTGGAGCAAGGTGCTTTCCCGGTTCCCTGCACTTCTCACATATAGCAGGCAGAAGGTGGAGACAACCGTGAGCTTTCTCACTGAACTAGGAGTTCCTAAGGAAAACATTGGCAAGATTCTGACGCGATGTCCTCATATCATGAGCTACAGTGTCAATGACAATCTCAGGCCAACTGCTGAATACTTCCAGTCAATCGGTGCGGATGCTGCGTCTCTTATTCAGAAAAGCCCACAGGCTTTTGGTCTGAACATTGAGGCAAAGCTAAAACCGATCACAGAATTTTTCCTGGAGAGAGACTTCACCATGGAGGAAATCGGCACTATGGCGAATAGATTTGGGATTATTCACACTCTCAGCATGGAAGATAATCTGCTTCCCAAATATGAATATTTCCTGACAATGGGATACCCAAGGAACGAGCTAGTGAAATTTCCACAATACTTCGGGTACAGTTTAGAACAGCGGATAAAGCCTCGGTATGCTCGGATGATTGATTGCGGAGTGAGGTTGATTTTGAACCAGCTGTTGTCAGTTTCAGATAGCAGATTTGAAGATATTCTACGGAAGAGGATGGATGGAATATGAGATGGTCATAATTTCGGATAACCATGGTTTAGGACAATCTCATTTGTAACAAGACTTGATCGCTGCCCTGGTATATAGTTTATCAGAACAAGTAGTGTCCTGGAAATTTGTACTTAGCCATGCTTGGCAGCTGACCAATTGTTATTGACAGTTTGATGTATAACTTGGCGGTTTATGATGCTAGTTTAGCTAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK069111             [CCTCCCGCTGCTCCCGTTGCGGCGGTCGCCGTCGCCGCCGACGATGACGAGCTTGGAGGCGGCCGCACGCCCGAGCAGCCGCCGCGTGGCACCGTGCGACCCGCGGGGACGCCCTCGGCTTCCGCCATGGCGGCTCATCCTTTCCCCCTCCCCTTCCTCCCGCAGGCTTTGCACTCTAATTTCTAGACAACTTCCCATTTGCAATGCACAATCATATACGGATAATCTGTGGTTAGCCAGTGGTAATGCTCAAAGCTCCGCTGCTGTTCGGTCAAGGTTGCTTGCTGCAGAAAGAGAGGAAGCAAAAGCTGTGCTATCACTATTTTTAAGACAGAAAGGTTTGAGAAGTATACTGGCTGCACGAATTGCCAATAAGGCAGATGGTTTCATTGAACACCTAGTTTCAAAGCTCCACATTACTTACAGATCACGATATGCTGAAGGAAGGGAGCTCAGCACACCGGAGATTAGAGATGCTTTGATTCCATATCTGGAAGCCCTTTCTAAAGAACATGGATCATGAAGAGATCAAGAATGTCGTGCGGAAATTCCCAGCATTTGCATATTACAATGTGGATCGCAAAATAAAACCTCTGGTGGCGCTGCTACTTGAGCTTGGTGTGCCAAGGTCAAACATACCAGGAATCATCAAGAAGAGACCTCAGCTATGTGGAATCAGCCTGTCAGATAATCTGAAACCTATGATGACCTATTTGGAAAACGTGGGTATCAACAAAGATAAGTGGAGCAAGGTGCTTTCCCGGTTCCCTGCACTTCTCACATATAGCAGGCAGAAGGTGGAGACAACCGTGAGCTTTCTCACTGAACTAGGAGTTCCTAAGGAAAACATTGGCAAGATTCTGACGCGATGTCCTCATATCATGAGCTACAGTGTCAATGACAATCTCAGGCCAACTGCTGAATACTTCCAGTCAATCGGTGCGGATGCTGCGTCTCTTATTCAGAAAAGCCCACAGGCTTTTGGTCTGAACATTGAGGCAAAGCTAAAACCGATCACAGAATTTTTCCTGGAGAGAGACTTCACCATGGAGGAAATCGGCACTATGGCGAATAGATTTGGGATTATTCACACTCTCAGCATGGAAGATAATCTGCTTCCCAAATATGAATATTTCCTGACAATGGGATACCCAAGGAACGAGCTAGTGAAATTTCCACAATACTTCGGGTACAGTTTAGAACAGCGGATAAAGCCTCGGTATGCTCGGATGATTGATTGCGGAGTGAGGTTGATTTTGAACCAGCTGTTGTCAGTTTCAGATAGCAGATTTGAAGATATTCTACGGAAGAGGATGGATGGAATATGAGATGGTCATAATTTCGGATAACCATGGTTTAGGACAATCTCATTTGTAACAAGACTTGATCGCTGCCCTGGTATATAGTTTATCAGAACAAGTAGTGTCCTGGAAATTTGTACTTAGCCATGCTTGGCAGCTGACCAATTGTTATTGACAGTTTGATGTATAACTTGGCGGTTTATGATGCTAGTTT                          ]
[+] EMBL AK059178             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATGTCCTCATATCATGAGCTACAGTGTCAATGACAATCTCAGGCCAACTGCTGAATACTTCCAGTCAATCGGTGCGGATGCTGCGTCTCTTATTCAGAAAAGCCCACAGGCTTTTGGTCTGAACATTGAGGCAAAGCTAAAACCGATCACAGAATTTTTCCTGGAGAGAGACTTCACCATGGAGGAAATCGGCACTATGGCGAATAGATTTGGGATTATTCACACTCTCAGCATGGAAGATAATCTGCTTCCCAAATATGAATATTTCCTGACAATGGGATACCCAAGGAACGAGCTAGTGAAATTTCCACAATACTTCGGGTACAGTTTAGAACAGCGGATAAAGCCTCGGTATGCTCGGATGATTGATTGCGGAGTGAGGTTGATTTTGAACCAGCTGTTGTCAGTTTCAGATAGCAGATTTGAAGATATTCTACGGAAGAGGATGGATGGAATATGAGATGGTCATAATTTCGGATAACCATGGTTTAGGACAATCTCATTTGTAACAAGACTTGATCGCTGCCCTGGTATATAGTTTATCAGAACAAGTAGTGTCCTGGAAATTTGTACTTAGCCATGCTTG                                                                                       ]
[-] EMBL CF326531             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATCGGCACTATGGCGAATAGATTTGGGATTATTCACACTCTCAGCATGGAAGATAATCTGCTTCCCAAATATGAATATTTCCTGACAATGGGATACCCAAGGAACGAGCTAGTGAAATTTCCACAATACTTCGGGTACAGTTTAGAACAGCGGATAAAGCCTCGGTATGCTCGGATGATTGATTGCGGAGTGAGGTTGATTTTGAACCAGCTGTTGTCAGTTTCAGATAGCAGATTTGAAGATATTCTACGGAAGAGGATGGATGGAATATGAGATGGTCATAATTTCGGATAACCATGGTTTAGGACAATCTCATTTGTAACAAGACTTGATCGCTGCCCTGGTAAAAAAATTATCAGAACAAGTAGTGTCCTGGAAATTTGTACTTAGCCATGCTTGGCAGCTGACCAATTGTTATTGACAGTTTGATGTATAACTTGGCGGTTTATGATGCTAGTTTAGCTAAAAAAAAAAAAAAAAAAAAAA]


>consensus_4609#0 CCTCCCGCTGCTCCCGTTGCGGCGGTCGCCGTCGCCGCCGACGATGACGAGCTTGGAGGC GGCCGCACGCCCGAGCAGCCGCCGCGTGGCACCGTGCGACCCGCGGGGACGCCCTCGGCT TCCGCCATGGCGGCTCATCCTTTCCCCCTCCCCTTCCTCCCGCAGGCTTTGCACTCTAAT TTCTAGACAACTTCCCATTTGCAATGCACAATCATATACGGATAATCTGTGGTTAGCCAG TGGTAATGCTCAAAGCTCCGCTGCTGTTCGGTCAAGGTTGCTTGCTGCAGAAAGAGAGGA AGCAAAAGCTGTGCTATCACTATTTTTAAGACAGAAAGGTTTGAGAAGTATACTGGCTGC ACGAATTGCCAATAAGGCAGATGGTTTCATTGAACACCTAGTTTCAAAGCTCCACATTAC TTACAGATCACGATATGCTGAAGGAAGGGAGCTCAGCACACCGGAGATTAGAGATGCTTT GATTCCATATCTGGAAGCCCTTTCTAAAGAACATGGATCATGAAGAGATCAAGAATGTCG TGCGGAAATTCCCAGCATTTGCATATTACAATGTGGATCGCAAAATAAAACCTCTGGTGG CGCTGCTACTTGAGCTTGGTGTGCCAAGGTCAAACATACCAGGAATCATCAAGAAGAGAC CTCAGCTATGTGGAATCAGCCTGTCAGATAATCTGAAACCTATGATGACCTATTTGGAAA ACGTGGGTATCAACAAAGATAAGTGGAGCAAGGTGCTTTCCCGGTTCCCTGCACTTCTCA CATATAGCAGGCAGAAGGTGGAGACAACCGTGAGCTTTCTCACTGAACTAGGAGTTCCTA AGGAAAACATTGGCAAGATTCTGACGCGATGTCCTCATATCATGAGCTACAGTGTCAATG ACAATCTCAGGCCAACTGCTGAATACTTCCAGTCAATCGGTGCGGATGCTGCGTCTCTTA TTCAGAAAAGCCCACAGGCTTTTGGTCTGAACATTGAGGCAAAGCTAAAACCGATCACAG AATTTTTCCTGGAGAGAGACTTCACCATGGAGGAAATCGGCACTATGGCGAATAGATTTG GGATTATTCACACTCTCAGCATGGAAGATAATCTGCTTCCCAAATATGAATATTTCCTGA CAATGGGATACCCAAGGAACGAGCTAGTGAAATTTCCACAATACTTCGGGTACAGTTTAG AACAGCGGATAAAGCCTCGGTATGCTCGGATGATTGATTGCGGAGTGAGGTTGATTTTGA ACCAGCTGTTGTCAGTTTCAGATAGCAGATTTGAAGATATTCTACGGAAGAGGATGGATG GAATATGAGATGGTCATAATTTCGGATAACCATGGTTTAGGACAATCTCATTTGTAACAA GACTTGATCGCTGCCCTGGTATATAGTTTATCAGAACAAGTAGTGTCCTGGAAATTTGTA CTTAGCCATGCTTGGCAGCTGACCAATTGTTATTGACAGTTTGATGTATAACTTGGCGGT TTATGATGCTAGTTTAGCTAAAAAAAAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)