Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4610 cluster # 4610       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4610#0 length = 1860 sequences # 3  

consensusID : consensus_4610#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1860
fasta sequence
                              [GGCTGTGGCTGTAAGTCGAGTTGAGATCGAACCTTTCCCCTCGTCCGACTGGTCTACCCAGAGAAACCCTAATACTCGCAGATCCCCTTCGCCTTCATACACCTCCATCCACAGCTGATGGCTACCATGGGGTCTGCACCTTCCTATGTCGTGCTGGACCGCGTGGTTCATCTGGACAAGGAAGCCGTCAAGGAAGAATCGGAGTGGGCGATCATGGAGTGTAGAGATCGGAAGACCTACCTGCGCAACGACCACGTCGGCGACGAGGTGGTGTATGGCTTGTCACTCCTAGTGCAGATCGCCGAGCCGCCGGATCTCTCCAAGCTGTCCATCCGCCTCAGCGAACCCCCCGTGCAAGTCGCCGCCCGACCAGAGGAGATCCTCGACGATGGCTCCTCCGTCTTGCAGCTCTTGGACTTGCCTAAACGGGCCCTCAACCTGCACACCTCCGTCCAGTCCGTCGCCGACGACCTCATCGTCTTCACCTCCTGCCTCCGCAATCGCACCCACCGCTACCTAGTCTACGACGCCATCGGCAAGTCACTCTCCATGATCCCTTGCCTGCCCAACCGCTGCGATCCCTCTGCCACGTTCCAGCCTCTCCCTCTTCGTGCCGGCGCCGGCGGCGACTACACCATTGCCCTCCTGGGAAGGGACATGCGGTCCGACCGGGAAACCACCAGGCGCTTCTTCCAGGATGTCCTCTGCCTGTGTCCGCCGCCGCCATCCTCGAGACCTCCACCGCCATCCTCCTTCTCCGCTGTCACCACGCCGTGGCAATTCAAGAACCCGCTCTTCCCTCCAGAGACGCCGAATCGCTTCAAGGCCCATATGGTGTTCTCGTCCGGAGGTCAGGCTTTCTGGGCCAACCTCGCGCAAGGTGTCCTCTACTGCAGCTGCCACGACGTGCTCACCGGTGGCTACGATGTGCCGTTCCGCTACATCCCGCTGCCGCCTGAGTGCCATCTTGACCCCATGAAGAATCAGCTGCGGTTATGCCGGACAATGAACTGCGTTAAGGACTCCATCAAGTTCGCTTCTATTGACATGGTGCCCCCTGATGAAGCTATGATGACGACTTGGACTCTGACCCTGGCCACCACGCAGTGGCACAAGGATGGGGAACTCCGTGTGGCAAGCCTGTGGGAGCTGGAGGGCTTCAAGAAGGCCGGGTTGCCTAAGGTCAAGCCGACTAGCCCCGTCCTGAGCATGGAGGAAAACGGTGTCATCTGTTTCATGCTCAATGCTGCTGAAGAAGGGGTGTACATGGTCAGCCTCAACATGCACACCAAGAACATCATGTCCTCCACCAGGCTCTCCTCCTGCCCAACACAGCCTTTGGGTGTAGAATTTCCCAAACACATTCAGAATCCAGTTCCACCCAAGAGGGATCGTGATGATTTGGAGGAGTGCTCGACTGCAATCAAGAGGAGGTTGTCAAGAACCTGACATCTTCGTCAGCACTGGAATGGAAGGATTGGAGGCAGACGTCTTGTGGTGCTGGAGCAGACCTCATCTAGTCATGCTGCTTATACTTACAGTATCAGGGATCGAAATCTGCATCGTCGTGCTTTGTTTTGCGAGCTGCTTCTACGTTTTCTATGGCTGCTGCTGCTATATATGGTTGTCTGTAGATCTGGATGTGCTTCAGAAATAGGAATTTAATCTGGCTGCTTATTTTGTTCCTAGCTTATGTATTGCAGCAGTAACTTCAGAAACAGGAATTTAATCTTACTATGACTTAGGAGTACATGTGATCTCCCATGCATATCTTTCTCATCTATGCTGGCTTGCTTGCTATTAGTGTTGATGCGTTGTACCATGTTTTTTTGCTTGGAATCGGCTGTAGCTTTATGGTCC]

[+] EMBL AK071430             [GGCTGTGGCTGTAAGTCGAGTTGAGATCGAACCTTTCCCCTCGTCCGACTGGTCTACCCAGAGAAACCCTAATACTCGCAGATCCCCTTCGCCTTCATACACCTCCATCCACAGCTGATGGCTACCATGGGGTCTGCACCTTCCTATGTCGTGCTGGACCGCGTGGTTCATCTGGACAAGGAAGCCGTCAAGGAAGAATCGGAGTGGGCGATCATGGAGTGTAGAGATCGGAAGACCTACCTGCGCAACGACCACGTCGGCGACGAGGTGGTGTATGGCTTGTCACTCCTAGTGCAGATCGCCGAGCCGCCGGATCTCTCCAAGCTGTCCATCCGCCTCAGCGAACCCCCCGTGCAAGTCGCCGCCCGACCAGAGGAGATCCTCGACGATGGCTCCTCCGTCTTGCAGCTCTTGGACTTGCCTAAACGGGCCCTCAACCTGCACACCTCCGTCCAGTCCGTCGCCGACGACCTCATCGTCTTCACCTCCTGCCTCCGCAATCGCACCCACCGCTACCTAGTCTACGACGCCATCGGCAAGTCACTCTCCATGATCCCTTGCCTGCCCAACCGCTGCGATCCCTCTGCCACGTTCCAGCCTCTCCCTCTTCGTGCCGGCGCCGGCGGCGACTACACCATTGCCCTCCTGGGAAGGGACATGCGGTCCGACCGGGAAACCACCAGGCGCTTCTTCCAGGATGTCCTCTGCCTGTGTCCGCCGCCGCCATCCTCGAGACCTCCACCGCCATCCTCCTTCTCCGCTGTCACCACGCCGTGGCAATTCAAGAACCCGCTCTTCCCTCCAGAGACGCCGAATCGCTTCAAGGCCCATATGGTGTTCTCGTCCGGAGGTCAGGCTTTCTGGGCCAACCTCGCGCAAGGTGTCCTCTACTGCAGCTGCCACGACGTGCTCACCGGTGGCTACGATGTGCCGTTCCGCTACATCCCGCTGCCGCCTGAGTGCCATCTTGACCCCATGAAGAATCAGCTGCGGTTATGCCGGACAATGAACTGCGTTAAGGACTCCATCAAGTTCGCTTCTATTGACATGGTGCCCCCTGATGAAGCTATGATGACGACTTGGACTCTGACCCTGGCCACCACGCAGTGGCACAAGGATGGGGAACTCCGTGTGGCAAGCCTGTGGGAGCTGGAGGGCTTCAAGAAGGCCGGGTTGCCTAAGGTCAAGCCGACTAGCCCCGTCCTGAGCATGGAGGAAAACGGTGTCATCTGTTTCATGCTCAATGCTGCTGAAGAAGGGGTGTACATGGTCAGCCTCAACATGCACACCAAGAACATCATGTCCTCCACCAGGCTCTCCTCCTGCCCAACACAGCCTTTGGGTGTAGAATTTCCCAAACACATTCAGAATCCAGTTCCACCCAAGAGGGATCGTGATGATTTGGAGGAGTGCTCGACTGCAATCAAGAGGAGGTTGTCAAGAACCTGACATCTTCGTCAGCACTGGAATGGAAGGATTGGAGGCAGACGTCTTGTGGTGCTGGAGCAGACCTCATCTAGTCATGCTGCTTATACTTACAGTATCAGGGATCGAAATCTGCATCGTCGTGCTTTGTTTTGCGAGCTGCTTCTACGTTTTCTATGGCTGCTGCTGCTATATATGGTTGTCTGTAGATCTGGATGTGCTTCAGAAATAGGAATTTAATCTGGCTGCTTATTTTGTTCCTAGCTTATGTATTGCAGCAGTAACTTCAGAAACAGGAATTTAATCTTACTATGACTTAGGAGTACATGTGATCTCCCATGCATATCTTTCTCATCTATGCTGGCTTGCTTGCTATTAGTGTTGATGCGTTGTACCATGTTTTTTTGCTTGGAATCGGCTGTAGCTTTATGGTCC]
[+] EMBL CA764687             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGTCATCTATTTCATGCTCAATGCTGCTGAAGAAGGGGTGTACATGGTCAGCCTCAACATGCACACCAAGAACATCATGTCCTCCACCAGGCTCTCCTCCTGCCCAACACAGCCTTTGGGTGTAGAATTTCCCAAACACATTCAGAATCCAGCTCCACCCAAGAGGGATCGTGCTGATTTGGAGGAGTGCTCGACTGCAATCAAGAGGAAGTTGTCAAGAACCTGACATCTTCGTCAGCACTGGAATGGAAGGATTGGAGGCAGACGTCTTGTGGTGCTGGAGCAGACCTCATCTAGTCATGCTGCTTATACTTACAGTATCAGGGATCGAAATCTGCATCGTCGTGCTTTGTTTTGCGAGCTGCTTCTACGTTTTCTATGGCTGCTGCTGCTATATATGGTTGTCTGTAGATCTGGATGTGCTTCAGAAATAGGAATTTAATCTGGCTGCTTATTTTGTTCCTAGCTTATGTATTGCAGCAGTAACTTCAGAAACAGGAATTTAATCTTACTATGACTTAGGAGTACATGTGATCT                                                                                                    ]
[+] EMBL CB685392             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GCGCCCTGCTTCTACGTTTTCTATGGCTGCTGCTGCTATATATGGTTGTCTGTAGATCTGGATGTGCTTCAGAAATAGGAATTTAATCTGGCTGCTTATTTTGTTCCTAGCTTATGTATTGCAGCAGTAACTTCAGAAACAGGAATTTAATCTTACTATG                                                                                                                         ]


>consensus_4610#0 GGCTGTGGCTGTAAGTCGAGTTGAGATCGAACCTTTCCCCTCGTCCGACTGGTCTACCCA GAGAAACCCTAATACTCGCAGATCCCCTTCGCCTTCATACACCTCCATCCACAGCTGATG GCTACCATGGGGTCTGCACCTTCCTATGTCGTGCTGGACCGCGTGGTTCATCTGGACAAG GAAGCCGTCAAGGAAGAATCGGAGTGGGCGATCATGGAGTGTAGAGATCGGAAGACCTAC CTGCGCAACGACCACGTCGGCGACGAGGTGGTGTATGGCTTGTCACTCCTAGTGCAGATC GCCGAGCCGCCGGATCTCTCCAAGCTGTCCATCCGCCTCAGCGAACCCCCCGTGCAAGTC GCCGCCCGACCAGAGGAGATCCTCGACGATGGCTCCTCCGTCTTGCAGCTCTTGGACTTG CCTAAACGGGCCCTCAACCTGCACACCTCCGTCCAGTCCGTCGCCGACGACCTCATCGTC TTCACCTCCTGCCTCCGCAATCGCACCCACCGCTACCTAGTCTACGACGCCATCGGCAAG TCACTCTCCATGATCCCTTGCCTGCCCAACCGCTGCGATCCCTCTGCCACGTTCCAGCCT CTCCCTCTTCGTGCCGGCGCCGGCGGCGACTACACCATTGCCCTCCTGGGAAGGGACATG CGGTCCGACCGGGAAACCACCAGGCGCTTCTTCCAGGATGTCCTCTGCCTGTGTCCGCCG CCGCCATCCTCGAGACCTCCACCGCCATCCTCCTTCTCCGCTGTCACCACGCCGTGGCAA TTCAAGAACCCGCTCTTCCCTCCAGAGACGCCGAATCGCTTCAAGGCCCATATGGTGTTC TCGTCCGGAGGTCAGGCTTTCTGGGCCAACCTCGCGCAAGGTGTCCTCTACTGCAGCTGC CACGACGTGCTCACCGGTGGCTACGATGTGCCGTTCCGCTACATCCCGCTGCCGCCTGAG TGCCATCTTGACCCCATGAAGAATCAGCTGCGGTTATGCCGGACAATGAACTGCGTTAAG GACTCCATCAAGTTCGCTTCTATTGACATGGTGCCCCCTGATGAAGCTATGATGACGACT TGGACTCTGACCCTGGCCACCACGCAGTGGCACAAGGATGGGGAACTCCGTGTGGCAAGC CTGTGGGAGCTGGAGGGCTTCAAGAAGGCCGGGTTGCCTAAGGTCAAGCCGACTAGCCCC GTCCTGAGCATGGAGGAAAACGGTGTCATCTGTTTCATGCTCAATGCTGCTGAAGAAGGG GTGTACATGGTCAGCCTCAACATGCACACCAAGAACATCATGTCCTCCACCAGGCTCTCC TCCTGCCCAACACAGCCTTTGGGTGTAGAATTTCCCAAACACATTCAGAATCCAGTTCCA CCCAAGAGGGATCGTGATGATTTGGAGGAGTGCTCGACTGCAATCAAGAGGAGGTTGTCA AGAACCTGACATCTTCGTCAGCACTGGAATGGAAGGATTGGAGGCAGACGTCTTGTGGTG CTGGAGCAGACCTCATCTAGTCATGCTGCTTATACTTACAGTATCAGGGATCGAAATCTG CATCGTCGTGCTTTGTTTTGCGAGCTGCTTCTACGTTTTCTATGGCTGCTGCTGCTATAT ATGGTTGTCTGTAGATCTGGATGTGCTTCAGAAATAGGAATTTAATCTGGCTGCTTATTT TGTTCCTAGCTTATGTATTGCAGCAGTAACTTCAGAAACAGGAATTTAATCTTACTATGA CTTAGGAGTACATGTGATCTCCCATGCATATCTTTCTCATCTATGCTGGCTTGCTTGCTA TTAGTGTTGATGCGTTGTACCATGTTTTTTTGCTTGGAATCGGCTGTAGCTTTATGGTCC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)