These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4616#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1105 fasta sequence [CGCTCTCACCCCCACTCCCACTCCCAAGCGCCAAGCACCTCTCCGCCATTGATGGACTTGTCGAGCTCCAAGGAGGCGACGCCTCCTCCCGAGGCGTGGTGGACGGGGGAGACGGTGGCGGTGGTGACGGGGGCGAACCGCGGGATCGGGCACGCGCTGGCGGCGCGGCTGGCGGAGCAAGGGCTGGCCGTGGTGCTGACGGCGCGGGACGGGGCGCGCGGGGAGGCGGCCGCGGCGGCGCTCCGCGCGAGGGGCCTCCGCTCCGTCCGGTTCCGCCGCCTCGACGTCTCCGATCCGGCCTCCGTCGCCGCCTTCGCCTCCTGGCTCCGCGACGAACTCGGCGGCCTCGACATCCTGGTGAACAACGCTGCCGTTTCGTTCAACGAGATCGACACCAATTCGGTGGAGCACGCTGAGACGGTGCTCAGGACCAACTTCTACGGGGCCAAGATGCTCATCGAGGCGCTCCTGCCGCTTTTCCGGCGATCGGCTGCCAACAGCAGGATCCTGAACATCAGCTCCCAGCTTGGCCTCCTAAATAAGGTGAGGGACCCGTCGCTGCGGAGCATGCTGCTGGACGAGGCGTCGCTGACGGAGGGGAAGATCGAGCGGATGGCGTCGCGGTTCCTGGCCGAGGTGAAGGACGGGACGTGGTCGGCGCCGGGGCGCGGGTGGCCGGCGGTGTGGACGGACTACGCGGTGTCCAAGCTCGCGCTCAACGCCTACTCGCGCGTCCTCGCCGCCCGCCTCGCCCGAGGCGGCGACCGCGTCGCCGTCAACTGCTTCTGCCCCGGGTTCACGCGCACCGACATGACCCGCGGCTGGGGCACCCGCACCGCCGAGGAGGCCGGCCGCGTCGCCGCCGGCCTCGCGCTGCTCCCGCCCGGCGACCTCCCCACCGGCAAGTTCTTCAAGTGGTGCACGCCCCAGCTCTACTCCAAGCTGTGAAACTGTCAGCGACATGCTAGGCTCCTGAGCTCCTCATGGTAATATGAGAGAAAACTACTGCAAATTTAGAGAGGAAAATTAAGCATGAGTTGCTTAAGCATCAACCCTGTCAGTTGACAGTGAAAATATATAGTACCACTATATGGCAGTATGCGTC] [+] EMBL AK109261 [CGCTCTCACCCCCACTCCCACTCCCAAGCGCCAAGCACCTCTCCGCCATTGATGGACTTGTCGAGCTCCAAGGAGGCGACGCCTCCTCCCGAGGCGTGGTGGACGGGGGAGACGGTGGCGGTGGTGACGGGGGCGAACCGCGGGATCGGGCACGCGCTGGCGGCGCGGCTGGCGGAGCAAGGGCTGGCCGTGGTGCTGACGGCGCGGGACGGGGCGCGCGGGGAGGCGGCCGCGGCGGCGCTCCGCGCGAGGGGCCTCCGCTCCGTCCGGTTCCGCCGCCTCGACGTCTCCGATCCGGCCTCCGTCGCCGCCTTCGCCTCCTGGCTCCGCGACGAACTCGGCGGCCTCGACATCCTGGTGAACAACGCTGCCGTTTCGTTCAACGAGATCGACACCAATTCGGTGGAGCACGCTGAGACGGTGCTCAGGACCAACTTCTACGGGGCCAAGATGCTCATCGAGGCGCTCCTGCCGCTTTTCCGGCGATCGGCTGCCAACAGCAGGATCCTGAACATCAGCTCCCAGCTTGGCCTCCTAAATAAGGTGAGGGACCCGTCGCTGCGGAGCATGCTGCTGGACGAGGCGTCGCTGACGGAGGGGAAGATCGAGCGGATGGCGTCGCGGTTCCTGGCCGAGGTGAAGGACGGGACGTGGTCGGCGCCGGGGCGCGGGTGGCCGGCGGTGTGGACGGACTACGCGGTGTCCAAGCTCGCGCTCAACGCCTACTCGCGCGTCCTCGCCGCCCGCCTCGCCCGAGGCGGCGACCGCGTCGCCGTCAACTGCTTCTGCCCCGGGTTCACGCGCACCGACATGACCCGCGGCTGGGGCACCCGCACCGCCGAGGAGGCCGGCCGCGTCGCCGCCGGCCTCGCGCTGCTCCCGCCCGGCGACCTCCCCACCGGCAAGTTCTTCAAGTGGTGCACGCCCCAGCTCTACTCCAAGCTGTGAAACTGTCAGCGACATGCTAGGCTCCTGAGCTCCTCATGGTAATATGAGAGAAAACTACTGCAAATTTAGAGAGGAAAATTAAGCATGAGTTGCTTAAGCATCAACCCTGTCAGTTGACAGTGAAAATATATAGTACCACTATATGGCAGTATGCGTC] consensusID : consensus_4616#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 791 fasta sequence [AACGAATCTAACCTGCCTTTGAAAGGGAATTTCGGCATCGAAGTTTCTCTATCTGCAGCAGATATCCTCGCGCGCACCCACACACACACACAAAAAAAAAACAAAAAGTGAGATTCGAGATATGTTTTTCTCGTTGTGATGATGGATTGGCTGCGTGTTTGTGCTGCAGAAGGTGAGCGACCCGGAGCTGAAGCGGCTGCTCCAGGACGAGGAGAGGCTGACGGAGGCGGAGGTGGAGGGGATGGCGTCGCGGTTCCTGGCGCAGGTGAAGGACGGGACGTGGCGCGGGCAGGGGTGGCCCAAGGTGTGGACGGACTACTCGGTGTCCAAGCTGGCCCTGAACGCGTACGCGCGGGTGCTGGCGCGGCGGCTGCAGGCGCGCGGCGACCGGGTGAGCGTCAACTGCTTCTGCCCCGGGTTCACGCGGACGGACATGACCCGCGGCTGGGGGAAGCGCACCGCGGAGGAGGCTGCCGAGATCGGGGCGCGCCTCGCCCTGCTCCCGCCCGGCGAGCTCCCCACGGGCACCTTCTTCAAGTGGTGCACGCCGCAGCTCTACTCCAAGCTCTGACGGCCGCCGCGCCGCGCGAGCCGCGAGGCATCCGTGTAGTGCGGTGCGGTTTGTAATTGTGCGGACAAGCGCCTCGCGCCCTCGCCGTCCTGTGCCGCGCGGTCTCAGCAACGAGCTCAATTACTGTGTATACTTAGTAGGTGTGTGACCGTCCAGCTGAATATATGTTCAGAATCAGATCCAACATTAGCAGAGCGAAATCGGTAGCGCGGCCGCTTTA] [+] EMBL AK105166 [AACGAATCTAACCTGCCTTTGAAAGGGAATTTCGGCATCGAAGTTTCTCTATCTGCAGCAGATATCCTCGCGCGCACCCACACACACACACAAAAAAAAAACAAAAAGTGAGATTCGAGATATGTTTTTCTCGTTGTGATGATGGATTGGCTGCGTGTTTGTGCTGCAGAAGGTGAGCGACCCGGAGCTGAAGCGGCTGCTCCAGGACGAGGAGAGGCTGACGGAGGCGGAGGTGGAGGGGATGGCGTCGCGGTTCCTGGCGCAGGTGAAGGACGGGACGTGGCGCGGGCAGGGGTGGCCCAAGGTGTGGACGGACTACTCGGTGTCCAAGCTGGCCCTGAACGCGTACGCGCGGGTGCTGGCGCGGCGGCTGCAGGCGCGCGGCGACCGGGTGAGCGTCAACTGCTTCTGCCCCGGGTTCACGCGGACGGACATGACCCGCGGCTGGGGGAAGCGCACCGCGGAGGAGGCTGCCGAGATCGGGGCGCGCCTCGCCCTGCTCCCGCCCGGCGAGCTCCCCACGGGCACCTTCTTCAAGTGGTGCACGCCGCAGCTCTACTCCAAGCTCTGACGGCCGCCGCGCCGCGCGAGCCGCGAGGCATCCGTGTAGTGCGGTGCGGTTTGTAATTGTGCGGACAAGCGCCTCGCGCCCTCGCCGTCCTGTGCCGCGCGGTCTCAGCAACGAGCTCAATTACTGTGTATACTTAGTAGGTGTGTGACCGTCCAGCTGAATATATGTTCAGAATCAGATCCAACATTAGCAGAGCGAAATCGGTAGCGCGGCCGCTTTA] consensusID : consensus_4616#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence [CTAATGAATCCAAACGATATCTTACATTATGGAATCGAGGGAATAGTATTTTACTCCATGTTGTTATACGCGAGAGTAAAACATTGTTGAATTAATAATCAGCGTTTTTTTTTTTGGGGGCATGGTGCAGAAGGTGAGGGACCCGTCGCTGCGGAGCATGCTGCTGGACGAGGCGTCGCTGACGGAGGGGAAGATCGAGCGGATGGCGTCGCGGTTCCTGGCCGAGGTGAAGGACGGGACGTGGTCGGCGCCGGGGCGCGGGTGGCCGGCGGTGTGGACGGACTACGCGGTGTCCAAGCTCGCGCTCAACGCCTACTCGCGCGTCCTCGCCGCCCGCCTCGCCCGAGGCGGCGACCGCGTCCCCGTCAACTGCTTCTGCCCCGGGTTCACGCGCACCGACATGACCCGCGGCTGGGGCACCCGCACCGCCGAGGAGGCCGGCCGCGTCGCCACCGGCCTCGCGCTGCTCCCGCCCGGCGACCTCCCCACCGGCAAGTTCTTCAAGTGGTGCACGCCCCAGCTCTACTCCAAGCTGTGAAACTGTCAGCGACATGCTAGGCTCCTGAGCTCCTCATGGTAATATGAGC] [-] EMBL CF326724 [CTAATGAATCCAAACGATATCTTACATTATGGAATCGAGGGAATAGTATTTTACTCCATGTTGTTATACGCGAGAGTAAAACATTGTTGAATTAATAATCAGCGTTTTTTTTTTTGGGGGCATGGTGCAGAAGGTGAGGGACCCGTCGCTGCGGAGCATGCTGCTGGACGAGGCGTCGCTGACGGAGGGGAAGATCGAGCGGATGGCGTCGCGGTTCCTGGCCGAGGTGAAGGACGGGACGTGGTCGGCGCCGGGGCGCGGGTGGCCGGCGGTGTGGACGGACTACGCGGTGTCCAAGCTCGCGCTCAACGCCTACTCGCGCGTCCTCGCCGCCCGCCTCGCCCGAGGCGGCGACCGCGTCCCCGTCAACTGCTTCTGCCCCGGGTTCACGCGCACCGACATGACCCGCGGCTGGGGCACCCGCACCGCCGAGGAGGCCGGCCGCGTCGCCACCGGCCTCGCGCTGCTCCCGCCCGGCGACCTCCCCACCGGCAAGTTCTTCAAGTGGTGCACGCCCCAGCTCTACTCCAAGCTGTGAAACTGTCAGCGACATGCTAGGCTCCTGAGCTCCTCATGGTAATATGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4616#0 CGCTCTCACCCCCACTCCCACTCCCAAGCGCCAAGCACCTCTCCGCCATTGATGGACTTG 60 consensus_4616#2 ------------------------------------------------------------ consensus_4616#1 ------------------------------------------------------------ consensus_4616#0 TCGAGCTCCAAGGAGGCGACGCCTCCTCCCGAGGCGTGGTGGACGGGGGAGACGGTGGCG 120 consensus_4616#2 ------------------------------------------------------------ consensus_4616#1 ------------------------------------------------------------ consensus_4616#0 GTGGTGACGGGGGCGAACCGCGGGATCGGGCACGCGCTGGCGGCGCGGCTGGCGGAGCAA 180 consensus_4616#2 ------------------------------------------------------------ consensus_4616#1 ------------------------------------------------------------ consensus_4616#0 GGGCTGGCCGTGGTGCTGACGGCGCGGGACGGGGCGCGCGGGGAGGCGGCCGCGGCGGCG 240 consensus_4616#2 ------------------------------------------------------------ consensus_4616#1 ------------------------------------------------------------ consensus_4616#0 CTCCGCGCGAGGGGCCTCCGCTCCGTCCGGTTCCGCCGCCTCGACGTCTCCGATCCGGCC 300 consensus_4616#2 ------------------------------------------------------------ consensus_4616#1 ------------------------------------------------------------ consensus_4616#0 TCCGTCGCCGCCTTCGCCTCCTGGCTCCGCGACGAACTCGGCGGCCTCGACATCCTGGTG 360 consensus_4616#2 ------------------------------------------------------------ consensus_4616#1 ------------------------------------------------------------ consensus_4616#0 AACAACGCTGCCGTTTCGTTCAACGAGATCGACACCAATTCGGTGGAGCACGCTGA-GAC 419 consensus_4616#2 ----------------------------------------------------CTAATGAA 8 consensus_4616#1 AACGAATCTAACCTGCCTTTGAAAGGGAATTTCGGCATCGAAGT----TTCTCTATCTGC 56 ** consensus_4616#0 GGTGCTCAGGACCAACTTCTACGGGGCCAAGATGCTCATCGAGGCGCTCCTGCCGCTTTT 479 consensus_4616#2 TCCAAACGATATCTTACATTATGGAATCGAGGGAATAGTATTTTACTCCATGTTGTTATA 68 consensus_4616#1 AGCAGATATCCTCGCGCGCACCCACACACACACAC-AAAAAAAAAACAAAAAGTGAGATT 115 * * * * consensus_4616#0 C-CGGCGATCGGCTGCCAACAGCAGGATCCTGAACATCAGCTCCCAGCTTGGCCTCCTAA 538 consensus_4616#2 CGCGAGAGTAAAACATTGTTGAATTAATAATCAGCGTTTTTTTTTTTGGGGGCATGGTGC 128 consensus_4616#1 C---GAGATATGTTTTTCTCGTTGTGATGATGG--ATTGGCTGCGTGTTTG---TGCTGC 167 * * ** * * * * * * consensus_4616#0 ATAAGGTGAGGGACCCGTCGCTGCGGAGCATGCTGCTGGACGAGGCGTCGCTGACGGAGG 598 consensus_4616#2 AGAAGGTGAGGGACCCGTCGCTGCGGAGCATGCTGCTGGACGAGGCGTCGCTGACGGAGG 188 consensus_4616#1 AGAAGGTGAGCGACCCGGAGCTGAAGCGGCTGCTCCAGGACGAGGAGAGGCTGACGGAGG 227 * ******** ****** **** * * **** * ******** * *********** consensus_4616#0 GGAAGATCGAGCGGATGGCGTCGCGGTTCCTGGCCGAGGTGAAGGACGGGACGTGGTCGG 658 consensus_4616#2 GGAAGATCGAGCGGATGGCGTCGCGGTTCCTGGCCGAGGTGAAGGACGGGACGTGGTCGG 248 consensus_4616#1 CGGAGGTGGAGGGGATGGCGTCGCGGTTCCTGGCGCAGGTGAAGGACGGGACGTGG---- 283 * ** * *** ********************** ******************** consensus_4616#0 CGCCGGGGCGCGGGTGGCCGGCGGTGTGGACGGACTACGCGGTGTCCAAGCTCGCGCTCA 718 consensus_4616#2 CGCCGGGGCGCGGGTGGCCGGCGGTGTGGACGGACTACGCGGTGTCCAAGCTCGCGCTCA 308 consensus_4616#1 CGC--GGGCAGGGGTGGCCCAAGGTGTGGACGGACTACTCGGTGTCCAAGCTGGCCCTGA 341 *** **** ******** **************** ************* ** ** * consensus_4616#0 ACGCCTACTCGCGCGTCCTCGC-CGCCCGCCTCGCCCGAGGCGGCGACCGCGTCGCCGTC 777 consensus_4616#2 ACGCCTACTCGCGCGTCCTCGC-CGCCCGCCTCGCCCGAGGCGGCGACCGCGTCCCCGTC 367 consensus_4616#1 ACGCGTACGCGCGGGTGCTGGCGCGGCGGCTGCAGGCGCG-CGGCGACCGGGTGAGCGTC 400 **** *** **** ** ** ** ** * ** * ** * ********* ** **** consensus_4616#0 AACTGCTTCTGCCCCGGGTTCACGCGCACCGACATGACCCGCGGCTGGGGCACCCGCACC 837 consensus_4616#2 AACTGCTTCTGCCCCGGGTTCACGCGCACCGACATGACCCGCGGCTGGGGCACCCGCACC 427 consensus_4616#1 AACTGCTTCTGCCCCGGGTTCACGCGGACGGACATGACCCGCGGCTGGGGGAAGCGCACC 460 ************************** ** ******************** * ****** consensus_4616#0 GCCGAGGAGGCCGGCCGCGTCGCCGCCGGCCTCGCGCTGCTCCCGCCCGGCGACCTCCCC 897 consensus_4616#2 GCCGAGGAGGCCGGCCGCGTCGCCACCGGCCTCGCGCTGCTCCCGCCCGGCGACCTCCCC 487 consensus_4616#1 GCGGAGGAGGCTGCCGAGATCGGGGCGCGCCTCGCCCTGCTCCCGCCCGGCGAGCTCCCC 520 ** ******** * * *** * ******* ***************** ****** consensus_4616#0 ACCGGCAAGTTCTTCAAGTGGTGCACGCCCCAGCTCTACTCCAAGCTGTGAAACTGTCAG 957 consensus_4616#2 ACCGGCAAGTTCTTCAAGTGGTGCACGCCCCAGCTCTACTCCAAGCTGTGAAACTGTCAG 547 consensus_4616#1 ACGGGCACCTTCTTCAAGTGGTGCACGCCGCAGCTCTACTCCAAGCTCTGACGGCCGCCG 580 ** **** ******************** ***************** *** * * consensus_4616#0 CGACATGCTAGGCTCCTGAGCTCCTCATGGTAATATGAGAGAAAACTACTGCAAATTTAG 1017 consensus_4616#2 CGACATGCTAGGCTCCTGAGCTCCTCATGGTAATATGAGC-------------------- 587 consensus_4616#1 CGCCGCGCGAGCCGCGAGGCATCCGTGTAGTGCGGTGCGG-----TTTGTAATTGTGCGG 635 ** * ** ** * * * *** * ** ** * consensus_4616#0 AGAGGAAAATTAAGCATGAGTTGCTTAAGCATCAACCCTGTCAGTTGACAGTGAAAATAT 1077 consensus_4616#2 ------------------------------------------------------------ consensus_4616#1 ACAAGCGCCTCGCGCCCTCGCCGTCCTGTGCCGCGCGGTCTCAGCAACGAGCTCAATTAC 695 consensus_4616#0 ATAGTACCACTA-TATGGCAGTATGCGTC------------------------------- 1105 consensus_4616#2 ------------------------------------------------------------ consensus_4616#1 TGTGTATACTTAGTAGGTGTGTGACCGTCCAGCTGAATATATGTTCAGAATCAGATCCAA 755 consensus_4616#0 ------------------------------------ consensus_4616#2 ------------------------------------ consensus_4616#1 CATTAGCAGAGCGAAATCGGTAGCGCGGCCGCTTTA 791 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||