cluster # 4619

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Oryza sativa
cluster # 4619 cluster # 4619 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4619#0 length = 624 sequences # 2

consensus_4619#1 length = 236 sequences # 1

consensusID : consensus_4619#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 624
fasta sequence

                              [GCGTGGCGGTCGACGGCGACGCAGGACAGCCAGGTGCTGCGGCTGGACATGGACAGCATGAGGAACCGGGTGCAGGACCTGGAGCGGGAGTGCTCCAGCATGAGGAGGGCCATCAAGAAGATCGATGGCCGCAGCGCCGCGGCGTCGCCGCACCACAGCGACGACGGAGACGACGACGCCGCGTCGGCCGACGGGTCGTCGAGGCCGGCGAACTGGCGGTCGCGGTACGGCTGCAAGTTCAGCACGCAGGTGTGCGACTCGCACGCGCGCAACGTCGTGGCGTCGAGAGCGTCACGGATGGGAATGAGCCCATAGGCGAATCGTCTGAATTCTGAACAAAAAATCGATGCTCGAGATGAAAATGATTTGAGAAATCATCCAACGTTGCCAATCGAAGATCCAGCCAGAAATCGCCCCATCTGTATGATTTCGCACGCTTACGTTGCATCGTTCGTGTGCACGAACGCCACTGCCATTCGACACGGAACATAAGGGATCCGTGTGTGTTGTATGTATGTACGAAATGCCATTTTGTAGCCTGTCATCTGTTACGTTTCATGTGTGCTTGTCGACTTGCTGTTTGTACAAAAGCAGTCGCGTAGATTTGAGTTGTCAGGGTGTACA]

[+] EMBL BI305778             [GCGTGGCGGTCGACGGCGACGCAGGACAGCCAGGTGCTGCGGCTGGACATGGACAGCATGAGGAACCGGGTGCAGGACCTGGAGCGGGAGTGCTCCAGCATGAGGAGGGCCATCAAGAAGATCGATGGCCGCAGCGCCGCGGCGTCGCCGCACCACAGCGACGACGGAGACGACGACGCCGCGTCGGCCGACGGGTCGTCGAGGCCGGCGAACTGGCGGTCGCGGTACGGCTGCAAGTTCAGCACGCAGGTGTGCGACTCGCACGCGCGCAACGTCGTGGCGTCGAGAGCGTCACGGATGGGAATGAGCCCATAGG                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CF326758             [                CGACGCAGGACAGCCAGGTGCTGCGGCTGGACATGGACAGCATGAGGAACCGGGTGCAGGACCTGGAGCGGGAGTGCTCCAGCATGAGGAGGGCCATCAAGAAGATCGATGGCCGCAGCGCCGCGGCGTCGCCGCGCCACAGCGACGCCGGAGACGACGACGCCGCGTCGGCCGACGGGTCGTCGAGGCCGGCGAACTGGCGGTCGCGGTACGGCTGCAAGTTCAGCACGCAGGTGTGCGACTCGCACGCGCGCAACGTCGTGGCGTCGAGAGCGTCACGGATGGGAATGAGCCCATAGGCGAATCGTCTGAATTCTGAACAAAAAATCGATGCTCGAGATGAAAATGATTTGAGAAATCATCCAACGTTGCCAATCGAAGATCCAGCCAGAAATCGCCCCATCTGTATGATTTCGCACGCTTACGTTGCATCGTTCGTGTGCACGAACGCCACTGCCATTCGACACGGAACATAAGGGATCCGTGTGTGTTGTATGTATGTACGAAATGCCATTTTGTAGCCTGTCATCTGTTACGTTTCATGTGTGCTTGTCGACTTGCTGTTTGTACAAAAGCAGTCGCGTAGATTTGAGTTGTCAGGGTGTACA]




>consensus_4619#0
GCGTGGCGGTCGACGGCGACGCAGGACAGCCAGGTGCTGCGGCTGGACATGGACAGCATG
AGGAACCGGGTGCAGGACCTGGAGCGGGAGTGCTCCAGCATGAGGAGGGCCATCAAGAAG
ATCGATGGCCGCAGCGCCGCGGCGTCGCCGCACCACAGCGACGACGGAGACGACGACGCC
GCGTCGGCCGACGGGTCGTCGAGGCCGGCGAACTGGCGGTCGCGGTACGGCTGCAAGTTC
AGCACGCAGGTGTGCGACTCGCACGCGCGCAACGTCGTGGCGTCGAGAGCGTCACGGATG
GGAATGAGCCCATAGGCGAATCGTCTGAATTCTGAACAAAAAATCGATGCTCGAGATGAA
AATGATTTGAGAAATCATCCAACGTTGCCAATCGAAGATCCAGCCAGAAATCGCCCCATC
TGTATGATTTCGCACGCTTACGTTGCATCGTTCGTGTGCACGAACGCCACTGCCATTCGA
CACGGAACATAAGGGATCCGTGTGTGTTGTATGTATGTACGAAATGCCATTTTGTAGCCT
GTCATCTGTTACGTTTCATGTGTGCTTGTCGACTTGCTGTTTGTACAAAAGCAGTCGCGT
AGATTTGAGTTGTCAGGGTGTACA

consensusID : consensus_4619#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence

                              [GCGGGAGTGCTCCAGCATGAGGAGGGCCATCAAGAAGATCGATGGCCGTAGCGCCGCGGTGTTGTCGTGCCACAGTGACGTCGGTGACGACTACGCCGTGTTGGTCGACGGGTCGTTGTGGCCGGTGAACTGGCGGTCGTGGTTCGGTTGTTATTTTTGTACGCATGTGTGCGTCTTGTTCGTCTTTATCGTTCTGGTTTTTTTTTAGTCTATTGTTTTTCATTGTTCCTTTTCTT]

[+] EMBL CA757020             [GCGGGAGTGCTCCAGCATGAGGAGGGCCATCAAGAAGATCGATGGCCGTAGCGCCGCGGTGTTGTCGTGCCACAGTGACGTCGGTGACGACTACGCCGTGTTGGTCGACGGGTCGTTGTGGCCGGTGAACTGGCGGTCGTGGTTCGGTTGTTATTTTTGTACGCATGTGTGCGTCTTGTTCGTCTTTATCGTTCTGGTTTTTTTTTAGTCTATTGTTTTTCATTGTTCCTTTTCTT]




>consensus_4619#1
GCGGGAGTGCTCCAGCATGAGGAGGGCCATCAAGAAGATCGATGGCCGTAGCGCCGCGGT
GTTGTCGTGCCACAGTGACGTCGGTGACGACTACGCCGTGTTGGTCGACGGGTCGTTGTG
GCCGGTGAACTGGCGGTCGTGGTTCGGTTGTTATTTTTGTACGCATGTGTGCGTCTTGTT
CGTCTTTATCGTTCTGGTTTTTTTTTAGTCTATTGTTTTTCATTGTTCCTTTTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4619#0      GCGTGGCGGTCGACGGCGACGCAGGACAGCCAGGTGCTGCGGCTGGACATGGACAGCATG 60
consensus_4619#1      ------------------------------------------------------------
                                                                                  

consensus_4619#0      AGGAACCGGGTGCAGGACCTGGAGCGGGAGTGCTCCAGCATGAGGAGGGCCATCAAGAAG 120
consensus_4619#1      -----------------------GCGGGAGTGCTCCAGCATGAGGAGGGCCATCAAGAAG 37
                                             *************************************

consensus_4619#0      ATCGATGGCCGCAGCGCCGCGGCGTCGCCGCACCACAGCGACGACGGAGACGACGACGCC 180
consensus_4619#1      ATCGATGGCCGTAGCGCCGCGGTGTTGTCGTGCCACAGTGACGTCGGTGACGACTACGCC 97
                      *********** ********** ** * **  ****** **** *** ****** *****

consensus_4619#0      GCGTCGGCCGACGGGTCGTCGAGGCCGGCGAACTGGCGGTCGCGGTACGGCTGCAAGTTC 240
consensus_4619#1      GTGTTGGTCGACGGGTCGTTGTGGCCGGTGAACTGGCGGTCGTGGTTCGGTTGTTATTTT 157
                      * ** ** *********** * ****** ************* *** *** **  * ** 

consensus_4619#0      AGCACGCAGGTGTGCGACTCGCACGCGCGCAACGTCGTGGCGTCGAGAGCGTC-ACGGAT 299
consensus_4619#1      TGTACGCATGTGTGCGTCTTGTTCGTCTTTATCGTTCTGGTTTTTTTTTAGTCTATTGTT 217
                       * ***** ******* ** *  **     * ***  ***  *       *** *  * *

consensus_4619#0      GGGAATGAGCCCATAGGCGAATCGTCTGAATTCTGAACAAAAAATCGATGCTCGAGATGA 359
consensus_4619#1      TTTCATTGTTCCTTTTCTT----------------------------------------- 236
                          **    ** *                                              

consensus_4619#0      AAATGATTTGAGAAATCATCCAACGTTGCCAATCGAAGATCCAGCCAGAAATCGCCCCAT 419
consensus_4619#1      ------------------------------------------------------------
                                                                                  

consensus_4619#0      CTGTATGATTTCGCACGCTTACGTTGCATCGTTCGTGTGCACGAACGCCACTGCCATTCG 479
consensus_4619#1      ------------------------------------------------------------
                                                                                  

consensus_4619#0      ACACGGAACATAAGGGATCCGTGTGTGTTGTATGTATGTACGAAATGCCATTTTGTAGCC 539
consensus_4619#1      ------------------------------------------------------------
                                                                                  

consensus_4619#0      TGTCATCTGTTACGTTTCATGTGTGCTTGTCGACTTGCTGTTTGTACAAAAGCAGTCGCG 599
consensus_4619#1      ------------------------------------------------------------
                                                                                  

consensus_4619#0      TAGATTTGAGTTGTCAGGGTGTACA 624
consensus_4619#1      -------------------------