These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4623#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence [GAGGCGGCGAGATGGGGGAGGAGGAGGCGGCGGCGGCGGCGGCGAGGGTGGCGGACAGGCGAGGGAGCTGCAGGACGCGGCGGCGGGCCTCCTGTCGAGGTCGTCGGCGGAGGAGGAGGCGCTCCGCCGCCGCGCCGCCGCGNTCGGGGNCGAGCTCGCCAGGCTCCGCAAGGCCGCCGCCCACGCCGACAGCNACAAGGTTGAGGAGGACTTGGNTCGAGCGACGTGCCTCATAAGCAATGGAGACATTNCGGCGCTGCTCCCGAGCAAGACACATGATGTTCCTGGGACCAGTAAATCTNCGGGCACCGAGGAAGGAGGTTCAGCTCAAGGTGAAGGAAGAGTATAATAGCTACAGGGTATTTTACAATTTGTACTATTTGATGATAATCTATTAGCCATCAAGTTGTGTTTTNAAATGAAAATTTTTGGTGTGGATTCTGGTGTCTTTNAGCTTTCATTTNATAAAAAGT] [+] EMBL OSS15567A [GAGGCGGCGAGATGGGGGAGGAGGAGGCGGCGGCGGCGGCGGCGAGGGTGGCGGACAGGCGAGGGAGCTGCAGGACGCGGCGGCGGGCCTCCTGTCGAGGTCGTCGGCGGAGGAGGAGGCGCTCCGCCGCCGCGCCGCCGCGNTCGGGGNCGAGCTCGCCAGGCTCCGCAAGGCCGCCGCCCACGCCGACAGCNACAAGGTTGAGGAGGACTTGGNTCGAGCGACGTGCCTCATAAGCAATGGAGACATTNCGGCGCTGCTCCCGAGCAAGACACATGATGTTCCTGGGACCAGTAAATCTNCGGGCACCGAGGAAGGAGGTTCAGCTCAAGGTGAAGGAAGAGTATAATAGCTACAGGGTATTTTACAATTTGTACTATTTGATGATAATCTATTAGCCATCAAGTTGTGTTTTNAAATGAAAATTTTTGGTGTGGATTCTGGTGTCTTTNAGCTTTCATTTNATAAAAAGT] consensusID : consensus_4623#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence [GGAGGACTTGGATCGAGCGACGTGCCTCATAANCGATGGAGACATTGCGGCGCTGCTCCCGAGCAAGACACATGATGTTCCTGGGACCAGTAAATNTGCGGGCNCCGAGGAAGGAGGTGCAGCTCAAGGTGAAGGAAGAGTATAATAGCTACAGGGTATGTTACAATTGTACTATTGATGATAATCTATAGCCATCAAGTTGTGTTTTGAAATGAAAATTTTGGGTGTGGCATTNTGGTGTCTTTGAGCTTCCATTTGATAAAGAGTTCAGGAATTTAATTTGCNCATTGATCCAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU198076 [GGAGGACTTGGATCGAGCGACGTGCCTCATAANCGATGGAGACATTGCGGCGCTGCTCCCGAGCAAGACACATGATGTTCCTGGGACCAGTAAATNTGCGGGCNCCGAGGAAGGAGGTGCAGCTCAAGGTGAAGGAAGAGTATAATAGCTACAGGGTATGTTACAATTGTACTATTGATGATAATCTATAGCCATCAAGTTGTGTTTTGAAATGAAAATTTTGGGTGTGGCATTNTGGTGTCTTTGAGCTTCCATTTGATAAAGAGTTCAGGAATTTAATTTGCNCATTGATCCAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_4623#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 181 fasta sequence [GCCGCCGCGCCGCCGNCTACGGNCCGNAGCTCGCCAGGCTCCGCAAGGCCGCCGCCCACGCCGACAGCNACAAGGTTGAGGAGGACTTGGATCGAGCGACGTGCCTCATAAGCNATGGAGACATTGCGGCGCTGCTCCCGAGCAAGACACATGGTACTTTCCTGAAGATGTTCCTGGGACC] [+] EMBL OSS2507A [GCCGCCGCGCCGCCGNCTACGGNCCGNAGCTCGCCAGGCTCCGCAAGGCCGCCGCCCACGCCGACAGCNACAAGGTTGAGGAGGACTTGGATCGAGCGACGTGCCTCATAAGCNATGGAGACATTGCGGCGCTGCTCCCGAGCAAGACACATGGTACTTTCCTGAAGATGTTCCTGGGACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4623#0 GAGGCGGCGAGATGGGGGAGGAGGAGGCGGCGGCGGCGGCGGCGAGGGTGGCGGACAGGC 60 consensus_4623#2 ------------------------------------------------------------ consensus_4623#1 ------------------------------------------------------------ consensus_4623#0 GAGGGAGCTGCAGGACGCGGCGGCGGGCCTCCTGTCGAGGTCGTCGGCGGAGGAGGAGGC 120 consensus_4623#2 ------------------------------------------------------------ consensus_4623#1 -------------------------GGAGGACTTGGATCGAGCGACGTGCCTCATAANCG 35 consensus_4623#0 GCTCCGCCGCCGCGCCGCCGCGNTCGGGGNCGAGCTCGCCAGGCTCCGCAAGGCCGCCGC 180 consensus_4623#2 -----GCCGCCGCGCCGCCGNCTACGGNCCGNAGCTCGCCAGGCTCCGCAAGGCCGCCGC 55 consensus_4623#1 ATGGAGACATTGCGGCGCTGCTCCCGAGCAAGA-CACATGATGTTCC-TGGGACCAGTAA 93 * * *** *** * ** * * * * * *** * ** consensus_4623#0 CCACGCCGACAGCNACAAGGTTGAGGAGGACTTGGNTCGAGCGACGTGCCTCATAAGCAA 240 consensus_4623#2 CCACGCCGACAGCNACAAGGTTGAGGAGGACTTGGATCGAGCGACGTGCCTCATAAGCNA 115 consensus_4623#1 ATNTGCGGGCNCCGAGGAAGGAGGTGCAG-CTCAAGGTGAAGGAAGAGTATAATAGCTAC 152 ** * * * * * * * * * ** ** ** * * * *** consensus_4623#0 TGGAGACATTNCGGCGCTGCTCCCGAGCAAGACACATGATGTT----CCTGGGACCAGT- 295 consensus_4623#2 TGGAGACATTGCGGCGCTGCTCCCGAGCAAGACACATGGTACT----TTC----CTGAA- 166 consensus_4623#1 AGGGTATGTTACAATTGTACTATTGATGATAATCTATAGCCATCAAGTTGTGTTTTGAAA 212 ** * ** * * ** ** * * ** * consensus_4623#0 -AAATCTNCGGGCACCGAGGAAGGAGGTTCAGCTCAAGGTGAAGGAAGAGTATAATAGCT 354 consensus_4623#2 -GATGTTCCTGGGACC-------------------------------------------- 181 consensus_4623#1 TGAAAATTTTGGGTGTGGCATTNTGGTGTCTTTGAGCTTCCATTTGATAAAGAGTTCAGG 272 * * ** consensus_4623#0 ACAGGGTATTTTACAATTTGTACTATTTGATGATAATCTATTAGCCATCAAGTTGTGTTT 414 consensus_4623#2 ------------------------------------------------------------ consensus_4623#1 AATTTAATTTGCNCATTGATCCAAAAAAAAAAAAAAAAAAAA------------------ 314 consensus_4623#0 TNAAATGAAAATTTTTGGTGTGGATTCTGGTGTCTTTNAGCTTTCATTTNATAAAAAGT 473 consensus_4623#2 ----------------------------------------------------------- consensus_4623#1 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||