These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4631#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1294 fasta sequence [AGCCATAGCCTCCTCTCCTCTCCACGCGACGAGCAAGTGGAGGAGCGGCGGCGGCGGCCGGCGATCGAGCTGCTCGATCGGCCATGGATGCTCCAGTTATTACACTCCTCGTCTTCCTCGTCGCCGTCGCTGCGGCAACTGCGGCGGCGGAGATGCCGCGGATGGAGCACCCGCGCAAGGGCGACGGGTCGCTGAGCCTCCTCGCCGTCGGCGACTGGGGGCGCCGCGGCGCGTACAACCAGTCGATGGTCGCCGCGCAGATGGGAATAGTAGGGGAGAAGATGGACATCGACTTCGTCATCTCCACCGGCGACAACTTCTACAAGAACGGCCTCACCGGCGTCGATGATAAGGCCTTCGAAGAATCCTTCTCCGACATCTACACCGCCAAGAGCCTCCACAAGCCATGGTACACCGTTCTTGGCAACCATGACTACAGGGGCGACGCCCTCGCCCAGCTGAGCCCTGTTCTTCGCAAGGTCGACAGCCGCTGGATCTGCATCAAGTCCTTCGTCGTTAGCGCAGAGATCGCGGATTTCTTCTTCGTGGACACGACGCCGTTCGTGCTCAAGTACTGGACTGATCCCAAGAACAGCAAGTACGACTGGAGAGGGGTTTCTCCCCGTGAAACCTACATTGCAAATGTCCTCAAGGATCTGGAGGATGCACTGGAGCAGTCCAAAGCGCCGTGGAAGATCGTGGTCGGACACCACGCCATCAGGAGCGTCAGCCAGCACGGCGATACCAAGGAGCTCCTGGAGCATCTCCTTCCAATCCTCAAAGCACATGGAGTTGATCTCTACCTCAACGGCCACGACCACTGCCTCGAGCACATCAGCAGCAGGGACAGCAAGATTCAGTACCTGACGAGCGGGCCGGGTCGAAGGCGTGGCGCGGGGTGCAGACGGCGAACACGGACAAGGTGGAGTTCTTCTACGACGGGCAGGGATTCATGTCGCTGCGGCTGACGGCGGCGGAGGCTAGCCTCGCCTTCTACGACGTCGCCGGCAAGATCCTCCACACATGGATGGTCGCCAAACCAGCCACCGGGTACTGAGATAGTGAGATTGCGAGCAGCTAGCTAGCTCTGTGATGTACTTGATGGTGTAATGGCAAGCGGTGTGTGGTTTCAACCTAAACCCCCGAGGTGTTCGACGGTGAAACTTGGGTTTTGGTGCTATTGCTATGTCAACGGGGATGAGTTTTCTCATGATTGATTGAAATCTTATTCGTCTAATTCCTCCTTCGGGACTTGTTCGGTTTGAATGGAATTGAAGAAAATTGAGAGGGAATA] [+] EMBL AK069660 [AGCCATAGCCTCCTCTCCTCTCCACGCGACGAGCAAGTGGAGGAGCGGCGGCGGCGGCCGGCGATCGAGCTGCTCGATCGGCCATGGATGCTCCAGTTATTACACTCCTCGTCTTCCTCGTCGCCGTCGCTGCGGCAACTGCGGCGGCGGAGATGCCGCGGATGGAGCACCCGCGCAAGGGCGACGGGTCGCTGAGCCTCCTCGCCGTCGGCGACTGGGGGCGCCGCGGCGCGTACAACCAGTCGATGGTCGCCGCGCAGATGGGAATAGTAGGGGAGAAGATGGACATCGACTTCGTCATCTCCACCGGCGACAACTTCTACAAGAACGGCCTCACCGGCGTCGATGATAAGGCCTTCGAAGAATCCTTCTCCGACATCTACACCGCCAAGAGCCTCCACAAGCCATGGTACACCGTTCTTGGCAACCATGACTACAGGGGCGACGCCCTCGCCCAGCTGAGCCCTGTTCTTCGCAAGGTCGACAGCCGCTGGATCTGCATCAAGTCCTTCGTCGTTAGCGCAGAGATCGCGGATTTCTTCTTCGTGGACACGACGCCGTTCGTGCTCAAGTACTGGACTGATCCCAAGAACAGCAAGTACGACTGGAGAGGGGTTTCTCCCCGTGAAACCTACATTGCAAATGTCCTCAAGGATCTGGAGGATGCACTGGAGCAGTCCAAAGCGCCGTGGAAGATCGTGGTCGGACACCACGCCATCAGGAGCGTCAGCCAGCACGGCGATACCAAGGAGCTCCTGGAGCATCTCCTTCCAATCCTCAAAGCACATGGAGTTGATCTCTACCTCAACGGCCACGACCACTGCCTCGAGCACATCAGCAGCAGGGACAGCAAGATTCAGTACCTGACGAGCGGGCCGGGTCGAAGGCGTGGCGCGGGGTGCAGACGGCGAACACGGACAAGGTGGAGTTCTTCTACGACGGGCAGGGATTCATGTCGCTGCGGCTGACGGCGGCGGAGGCTAGCCTCGCCTTCTACGACGTCGCCGGCAAGATCCTCCACACATGGATGGTCGCCAAACCAGCCACCGGGTACTGAGATAGTGAGATTGCGAGCAGCTAGCTAGCTCTGTGATGTACTTGATGGTGTAATGGCAAGCGGTGTGTGGTTTCAACCTAAACCCCCGAGGTGTTCGACGGTGAAACTTGGGTTTTGGTGCTATTGCTATGTCAACGGGGATGAGTTTTCTCATGATTGATTGAAATCTTATTCGTCTAATTCCTCCTTCGGGACTTGTTCGGTTTGAATGGAATTGAAGAAAATTGAGAGGGAATA] [+] EMBL AU162330 [ TCCTCTCCACGCGACGAGCAAGTGGAGGAGCGGCGGCGGCGGCCGGCGATCGAGCTGCTCGATCGGCCATGGATGCTCCAGTTATTACACTCCTCGTCTTCCTCGTCGCCGTCGCTGCGGCAACTGCGGCGGCGGAGATGCCGCGGATGGAGCACCCG GCAAGGGCGACGGGTCGCTGAGCCTCCTCGCCGTCGG GACTGGGGGCGCCGCGGCGCGTACAACCAGTCGATGGTCGCCGCGCAGATGGGAATAGTAGGGGAGAAGATGGACATCGACTTCGTCATCTCCACCGGCGACAACTTCTACAAGAACGGCCTCANCGGCGTCGATGATAAGGCCTTCGAAGAATCCTTCTCCGACATCTACACCGCCAAGAGCCTCCACAAGCCATGGTACACCGTTCTTGGCAACCATGACTACAGGGGCGANG CCTCGCCCAGCTGAGCCCTG ] consensusID : consensus_4631#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [ACCAAGTGGAGGACCGCCGCGCGCGCCGGCGATCGACTGCTCGATCGCCATGGATGCTCCAGTTATTACACTCCTCGTCTTCCTCGTCGCCGTCGCTGCGGCAACTGCGNCGGCGGAGATCCNCGGCTGGAGCACCCGCACAAGGGCGACGGGTCGCTGAGCCTCCTCNCCGTCGGCGACTGGGGGCGCCCGCCGGCGCGTACAACCCAGTCGATGGTCCCCGCGCCAGGTAATCGATTGATTTTGATTGATTAGTTGCCGGTGATGATTTCGTTTTGCTAAATGTGGCTAGTTAATTATTAATGGCCTAATTACTGAAATACCTGTAATCAATGTGGTTAAGGTAGAAGAAATCCAGAAAACGAGGAGTTGTTTTGGAGGCTATGTGGAATTGTAAATTAAGCTCATGTTTAGTGCTCTCTTGTTTTTTTAAGGAAGAAAACAGAGTGTAGTATCTAAAAAAAAAA] [+] EMBL BI806600 [ACCAAGTGGAGGACCGCCGCGCGCGCCGGCGATCGACTGCTCGATCGCCATGGATGCTCCAGTTATTACACTCCTCGTCTTCCTCGTCGCCGTCGCTGCGGCAACTGCGNCGGCGGAGATCCNCGGCTGGAGCACCCGCACAAGGGCGACGGGTCGCTGAGCCTCCTCNCCGTCGGCGACTGGGGGCGCCCGCCGGCGCGTACAACCCAGTCGATGGTCCCCGCGCCAGGTAATCGATTGATTTTGATTGATTAGTTGCCGGTGATGATTTCGTTTTGCTAAATGTGGCTAGTTAATTATTAATGGCCTAATTACTGAAATACCTGTAATCAATGTGGTTAAGGTAGAAGAAATCCAGAAAACGAGGAGTTGTTTTGGAGGCTATGTGGAATTGTAAATTAAGCTCATGTTTAGTGCTCTCTTGTTTTTTTAAGGAAGAAAACAGAGTGTAGTATCTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4631#0 AGCCATAGCCTCCTCTCCTCTCCACGCGACGAGCAAGTGGAGGAGCGGCGGCGGCGGCCG 60 consensus_4631#1 -------------------------------ACCAAGTGGAGGACCGCCGCGCGCG-CCG 28 * *********** ** ** *** *** consensus_4631#0 GCGATCGAGCTGCTCGATCGGCCATGGATGCTCCAGTTATTACACTCCTCGTCTTCCTCG 120 consensus_4631#1 GCGATCGA-CTGCTCGATCG-CCATGGATGCTCCAGTTATTACACTCCTCGTCTTCCTCG 86 ******** *********** *************************************** consensus_4631#0 TCGCCGTCGCTGCGGCAACTGCGGCGGCGGAGATGCCGCGGATGGAGCACCCGCGCAAGG 180 consensus_4631#1 TCGCCGTCGCTGCGGCAACTGCGNCGGCGGAGAT-CCNCGGCTGGAGCACCCGCACAAGG 145 *********************** ********** ** *** ************ ***** consensus_4631#0 GCGACGGGTCGCTGAGCCTCCTCGCCGTCGGCGACTGGGGGCGCCG--CGGCGCGTACAA 238 consensus_4631#1 GCGACGGGTCGCTGAGCCTCCTCNCCGTCGGCGACTGGGGGCGCCCGCCGGCGCGTACAA 205 *********************** ********************* ************ consensus_4631#0 CC-AGTCGATGGTCGCCGCGCAGATGGGAATAGTAGGGGAGAAGATGGACATCGACTTCG 297 consensus_4631#1 CCCAGTCGATGGTCCCCGCGCCA-------------GGTAATCGATTGATTTTGATTGAT 252 ** *********** ****** ** * *** ** * ** * consensus_4631#0 TCATCTCCACCGGCGACAAC-TTCTACAAGAACGGCCTCACCGGC-GTCGATGATAAGGC 355 consensus_4631#1 TAGTTGCCGGTGATGATTTCGTTTTGCTAAATGTGGCTAGTTAATTATTAATGGCCTAAT 312 * * ** * ** * ** * * * * * ** * *** consensus_4631#0 CTTCGAAGAATCCTTCTCCGACATCTACACCGCCAAGAGCCTCCACAAGCCATGGTACAC 415 consensus_4631#1 TACTGAAATACCTGTAATCAATGTGGTTAAGGTAGAAGAAATCCAGAAAACGAGGAGTTG 372 *** * * * * * * * * * **** ** * ** consensus_4631#0 CGTTCTTGGCAACCATGACTACAGGGGCGACGCCCTCGCCCAGCTGAGCCCTGTTCTTCG 475 consensus_4631#1 TTTTGGAGGCTAT-GTGGAATTGTAAATTAAGCTCATGTTTAG-TGCTCTCTTGTTTTTT 430 ** *** * ** * ** * * ** ** * ** * ** consensus_4631#0 CAAGGTCGACAGC----CGCTGGATCTGCATCAAGTCCTTCGTCGTTAGCGCAGAGATCG 531 consensus_4631#1 TAAGGAAGAAAACAGAGTGTAGTATCTAAAAAAAAAA----------------------- 467 **** ** * * * * **** * ** consensus_4631#0 CGGATTTCTTCTTCGTGGACACGACGCCGTTCGTGCTCAAGTACTGGACTGATCCCAAGA 591 consensus_4631#1 ------------------------------------------------------------ consensus_4631#0 ACAGCAAGTACGACTGGAGAGGGGTTTCTCCCCGTGAAACCTACATTGCAAATGTCCTCA 651 consensus_4631#1 ------------------------------------------------------------ consensus_4631#0 AGGATCTGGAGGATGCACTGGAGCAGTCCAAAGCGCCGTGGAAGATCGTGGTCGGACACC 711 consensus_4631#1 ------------------------------------------------------------ consensus_4631#0 ACGCCATCAGGAGCGTCAGCCAGCACGGCGATACCAAGGAGCTCCTGGAGCATCTCCTTC 771 consensus_4631#1 ------------------------------------------------------------ consensus_4631#0 CAATCCTCAAAGCACATGGAGTTGATCTCTACCTCAACGGCCACGACCACTGCCTCGAGC 831 consensus_4631#1 ------------------------------------------------------------ consensus_4631#0 ACATCAGCAGCAGGGACAGCAAGATTCAGTACCTGACGAGCGGGCCGGGTCGAAGGCGTG 891 consensus_4631#1 ------------------------------------------------------------ consensus_4631#0 GCGCGGGGTGCAGACGGCGAACACGGACAAGGTGGAGTTCTTCTACGACGGGCAGGGATT 951 consensus_4631#1 ------------------------------------------------------------ consensus_4631#0 CATGTCGCTGCGGCTGACGGCGGCGGAGGCTAGCCTCGCCTTCTACGACGTCGCCGGCAA 1011 consensus_4631#1 ------------------------------------------------------------ consensus_4631#0 GATCCTCCACACATGGATGGTCGCCAAACCAGCCACCGGGTACTGAGATAGTGAGATTGC 1071 consensus_4631#1 ------------------------------------------------------------ consensus_4631#0 GAGCAGCTAGCTAGCTCTGTGATGTACTTGATGGTGTAATGGCAAGCGGTGTGTGGTTTC 1131 consensus_4631#1 ------------------------------------------------------------ consensus_4631#0 AACCTAAACCCCCGAGGTGTTCGACGGTGAAACTTGGGTTTTGGTGCTATTGCTATGTCA 1191 consensus_4631#1 ------------------------------------------------------------ consensus_4631#0 ACGGGGATGAGTTTTCTCATGATTGATTGAAATCTTATTCGTCTAATTCCTCCTTCGGGA 1251 consensus_4631#1 ------------------------------------------------------------ consensus_4631#0 CTTGTTCGGTTTGAATGGAATTGAAGAAAATTGAGAGGGAATA 1294 consensus_4631#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||