These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4632#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1588 fasta sequence [GAGAGATTCAGAGGCAGAGCCGCGAGCCCCACGACACCCTCCTCCTCCTCTCCCTATCCCCTTCTCCCCCAAATCATCCTTCTCAAAATCAAAGGCTCCGGGTGGTGAGCGCTAATCGAGAGGGATTAGTTGTTCGCGGAGATCGCCGCTATGCAGGAAGCTCTTCTACCTCCGGCTCATCCAGGCCGCTTCTACTCGGACTTTGGCCCGAAGCCGTTCGGCAGCGGAGATCAACGGCTCTCCTCGCCCAACCTGCTGACCAACGGTGGAGATCTCTTCTACGGCTGCTACTCCCCCTTCAGCCCTACCCGCGTGCTCTCGCCGCCGCCGCCGCGGCGCGCCGCCTCGTTCTCCCACTGCTCGTCCTCCTCCGACTCCGTCGTCGACGACGGAGATGGTGCGGGGGCAGCGGCAGCGACCGAGCACCGCCTCCACCTCGCCCACCTCGCGCTCCAGTACCAGGAGATGGCCAACCGCTTCGAGCTCTGCCTCTCCCACCTCGCCGATGCCGCGGACGAGGCGGCCGCGCTCCGTCAGGAGAACGCCGAGCTCCGCGTCGCCAACAACGACCTCGCATGCCGCATCGCCAAGTTCGGCGGAAGGCAGAGCTCCGCCATCGCCCTCGCCGGTGACCTCCGCCGCCTCCGCCTCCCCAAGGAGCAGACCGTGCCAGCTCTTCCTCCTCCGCCGCAGTCTCCGCCGGCCGCACTGATGAATCCCGTCGCCGTCCCCGAGAAGCAGGCTGTTCTTCCGAAGAGCATCTCCATCCGTTCGACCGGATACCAGAAGCTGAACCAGGGCGGCAAGCATCGCGTGTCGAAGCCGGTGAACGTCGGCTCGCAGCGCGTGTTCGTGGGCATTGACGGCGCGGAGGGAGGCGAGCACAAAGTTGGTGTGAAGAAGGAGGAGCCGCCCATGGGTGGGCTGGAGTTCGAGGTGTACAACCAGGGCATGTTCAAGACGGAGCTGTGCAACAAGTGGGAGGAGACCGGGGCTTGCCCCTACGGCGACCAGTGCCAGTTCGCCCACGGCGTCGCGGAGCTCCGCCCCGTCATCCGCCACCCTCGCTACAAGACCCAGGTCTGCCGCATGGTGCTCGCCGGCGGCGTCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACTCCATCACCCCCGCCGACCGCTTCTCCTTCGGCCATTGATCATACGTATCAGTCCATCACCGATCGCCACTCTCTCACTCCCTCCTAATCTCCTCTCTCTTTGATAATGACATGAAAAGAGGGGGAAAAAAAGAAGAGGCCGTAAATAAGGTATACTATTTAGTTGCACAAAGCAAATGAGAACTGAATTATACAATTAGCACACAGGCGAAATGTGAATACTAGAGAGTTATAGCTATTAAGTTGTGGTCAGATATGTGAGTTATTACATTGGGGGTTATTTGTCCTATGGTTCATATTGTTATATAGGTTATTATGATCTTGTTTCCTTGTTTCGTTTTAAGCAAACCGGGTGACAAATTGTTGGACTCATGTAAGTAAGGCTGTTATTTGGATATCTGAATTATGTATGGAACACTTGTACGCTATGAAAGTGCCTGAAGGC] [+] EMBL AK106354 [GAGAGATTCAGAGGCAGAGCCGCGAGCCCCACGACACCCTCCTCCTCCTCTCCCTATCCCCTTCTCCCCCAAATCATCCTTCTCAAAATCAAAGGCTCCGGGTGGTGAGCGCTAATCGAGAGGGATTAGTTGTTCGCGGAGATCGCCGCTATGCAGGAAGCTCTTCTACCTCCGGCTCATCCAGGCCGCTTCTACTCGGACTTTGGCCCGAAGCCGTTCGGCAGCGGAGATCAACGGCTCTCCTCGCCCAACCTGCTGACCAACGGTGGAGATCTCTTCTACGGCTGCTACTCCCCCTTCAGCCCTACCCGCGTGCTCTCGCCGCCGCCGCCGCGGCGCGCCGCCTCGTTCTCCCACTGCTCGTCCTCCTCCGACTCCGTCGTCGACGACGGAGATGGTGCGGGGGCAGCGGCAGCGACCGAGCACCGCCTCCACCTCGCCCACCTCGCGCTCCAGTACCAGGAGATGGCCAACCGCTTCGAGCTCTGCCTCTCCCACCTCGCCGATGCCGCGGACGAGGCGGCCGCGCTCCGTCAGGAGAACGCCGAGCTCCGCGTCGCCAACAACGACCTCGCATGCCGCATCGCCAAGTTCGGCGGAAGGCAGAGCTCCGCCATCGCCCTCGCCGGTGACCTCCGCCGCCTCCGCCTCCCCAAGGAGCAGACCGTGCCAGCTCTTCCTCCTCCGCCGCAGTCTCCGCCGGCCGCACTGATGAATCCCGTCGCCGTCCCCGAGAAGCAGGCTGTTCTTCCGAAGAGCATCTCCATCCGTTCGACCGGATACCAGAAGCTGAACCAGGGCGGCAAGCATCGCGTGTCGAAGCCGGTGAACGTCGGCTCGCAGCGCGTGTTCGTGGGCATTGACGGCGCGGAGGGAGGCGAGCACAAAGTTGGTGTGAAGAAGGAGGAGCCGCCCATGGGTGGGCTGGAGTTCGAGGTGTACAACCAGGGCATGTTCAAGACGGAGCTGTGCAACAAGTGGGAGGAGACCGGGGCTTGCCCCTACGGCGACCAGTGCCAGTTCGCCCACGGCGTCGCGGAGCTCCGCCCCGTCATCCGCCACCCTCGCTACAAGACCCAGGTCTGCCGCATGGTGCTCGCCGGCGGCGTCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACTCCATCACCCCCGCCGACCGCTTCTCCTTCGGCCATTGATCATACGTATCAGTCCATCACCGATCGCCACTCTCTCACTCCCTCCTAATCTCCTCTCTCTTTGATAATGACATGAAAAGAGGGGGAAAAAAAGAAGAGGCCGTAAATAAGGTATACTATTTAGTTGCACAAAGCAAATGAGAACTGAATTATACAATTAGCACACAGGCGAAATGTGAATACTAGAGAGTTATAGCTATTAAGTTGTGGTCAGATATGTGAGTTATTACATTGGGGGTTATTTGTCCTATGGTTCATATTGTTATATAGGTTATTATGATCTTGTTTCCTTGTTTCGTTTTAAGCAAACCGGGTGACAAATTGTTGGACTCATGTAAGTAAGGCTGTTATTTGGATATCTGAATTATGTATGGAACACTTGTACGCTATGAAAGTGCCTGAAGGC] consensusID : consensus_4632#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1479 fasta sequence [CGTCGTCCTCTCCCCCGAATCAGCTGGTCTCTAGCTTCGATCGGCACTGCCCCGAGAGGAAGCGCTTGTCTCCCCGGTGCGCTCGGCATTGGAGCTCAAGCCGTTCAACTTCGGAGACCAGCGGCTCGCGTCCTCGCCGCGCTACCTCCCCAGCGGCGACGACGCCCTGTACCGCTGCTCCTCCCCCTTCAGCCCCAGCTTCGGGTTCTCCTCGCCGTCGCCGCTAGCCACCTCCGTCTCGCTCTCGCCGTCCTCCTCCGCCTCCCTCGTCGATGACGGCGACGACGGAGGAGCGGCCGCCGACGCCACGGGGCAGCGGCTCCAGCTCGCGCGCCTCGCGCTGCAGTACCAGGAGGTGGCCGACCGCTACGAGCTTTGCCTCTCCCACCTCGCCGAGGCCGCCGAAGAGGCGGCGGCGCTCCGTCTTGAGAACGCCGAGCTCCGCGTCACCAACAGCGACCTCGCCCTCCGTCTCGCGCTGCTCAGCGGGAAGCATACCGCCGCCGTCGCCGTCGCCGACGAGATCCGTCGGCTCCGCCTCGGCGAGCAGAAGGTCGCGGCCGCCACCAAGGAGCGCACGCCCGAGAAGCTCGCCGTGCTGCCGAAGAGCATCTCCGTGCGGTCCACAAGCTACCTCAAGCTGAACCAGCAATCCCAGGCCGCCACCGCCACTTCGGCGGCCCCCAACCGCAAGCCCCGCACGTCGTCGAACCCAACCAACCCCCCGAACTCGCAGCGCGCGTACGACGGCGGCAAGAAAGGCGACGAGCAGAAGGCGCAACCCGCGGACAGCGGCGCGGAGCTGGAGGTGTACAACCAGGGCATGTTCAAGACGGAGCTGTGCAACAAGTGGGAGGAGACGGGAGACTGCCCCTACGGCGACCAGTGCCAGTTCGCGCACGGCGTCACCGAGCTCCGCCCCGTCATCCGCCACCCTCGCTACAAGACCGCGGTGTGCCGCATGGTGCTCGCCGGCGACGTCTGCCCCTACGGCCACCGTTGCCACTTCCGCCACTCGCTCACCCCCGCCGAACGCCTCCTCCTCCGATCCTAGCTAAATTAAGGCAGTGCGCGGCCAGTCTTTTGCACCACCTGGATGGTTTATTGCTTTCGCATGTATACTATATACGATTATACACACGAAAATGTACAAAAATACGAACATCGTAAATAACACATAAGAGGTACGTACAGGGTACAGGAAGCCATATGGTAGAGCTAGTAGCACCGATATTGTAATGTGAATATCCACAAACAGGATTAGTGTTTTCGTCAGCTCGATCGGGTTCAGGGACTTCAGATTCGTCAGTTTGTTCATATTCTGTTCAGAAGACGTGGTACTATAAGGCCCGTAAGGACGTGGATTCGCAAGTACTACTTCAAAAGTGCAGGTGTGAAATCCCCAGAAAGAAATGTGGCTGACGACTGTCATTTTGTTGGTGTCATGAGGCTTTTTATTAATGGTATATAGAGGCTCTT] [+] EMBL AK108658 [CGTCGTCCTCTCCCCCGAATCAGCTGGTCTCTAGCTTCGATCGGCACTGCCCCGAGAGGAAGCGCTTGTCTCCCCGGTGCGCTCGGCATTGGAGCTCAAGCCGTTCAACTTCGGAGACCAGCGGCTCGCGTCCTCGCCGCGCTACCTCCCCAGCGGCGACGACGCCCTGTACCGCTGCTCCTCCCCCTTCAGCCCCAGCTTCGGGTTCTCCTCGCCGTCGCCGCTAGCCACCTCCGTCTCGCTCTCGCCGTCCTCCTCCGCCTCCCTCGTCGATGACGGCGACGACGGAGGAGCGGCCGCCGACGCCACGGGGCAGCGGCTCCAGCTCGCGCGCCTCGCGCTGCAGTACCAGGAGGTGGCCGACCGCTACGAGCTTTGCCTCTCCCACCTCGCCGAGGCCGCCGAAGAGGCGGCGGCGCTCCGTCTTGAGAACGCCGAGCTCCGCGTCACCAACAGCGACCTCGCCCTCCGTCTCGCGCTGCTCAGCGGGAAGCATACCGCCGCCGTCGCCGTCGCCGACGAGATCCGTCGGCTCCGCCTCGGCGAGCAGAAGGTCGCGGCCGCCACCAAGGAGCGCACGCCCGAGAAGCTCGCCGTGCTGCCGAAGAGCATCTCCGTGCGGTCCACAAGCTACCTCAAGCTGAACCAGCAATCCCAGGCCGCCACCGCCACTTCGGCGGCCCCCAACCGCAAGCCCCGCACGTCGTCGAACCCAACCAACCCCCCGAACTCGCAGCGCGCGTACGACGGCGGCAAGAAAGGCGACGAGCAGAAGGCGCAACCCGCGGACAGCGGCGCGGAGCTGGAGGTGTACAACCAGGGCATGTTCAAGACGGAGCTGTGCAACAAGTGGGAGGAGACGGGAGACTGCCCCTACGGCGACCAGTGCCAGTTCGCGCACGGCGTCACCGAGCTCCGCCCCGTCATCCGCCACCCTCGCTACAAGACCGCGGTGTGCCGCATGGTGCTCGCCGGCGACGTCTGCCCCTACGGCCACCGTTGCCACTTCCGCCACTCGCTCACCCCCGCCGAACGCCTCCTCCTCCGATCCTAGCTAAATTAAGGCAGTGCGCGGCCAGTCTTTTGCACCACCTGGATGGTTTATTGCTTTCGCATGTATACTATATACGATTATACACACGAAAATGTACAAAAATACGAACATCGTAAATAACACATAAGAGGTACGTACAGGGTACAGGAAGCCATATGGTAGAGCTAGTAGCACCGATATTGTAATGTGAATATCCACAAACAGGATTAG ] [+] EMBL AU162339 [ GAAGCCATATGGTAGAGCTAGTAGCACCGATATTGTAATGTGAATATCCACAAACAGGATTAGTGTTTTCGTCAGCTCGATCGGGTTCAGGGACTTCAGATTCGTCAGTTTGTTCATATTCTGTTCAGAAGACGTGGTACTATAAGGCCCGTAAGGACGTGGATTCGCAAGTACTACTTCAAAAGTGCAGGTGTGAAATCCCCAGAAAGAAATGTGGCTGACGACTGTCATTTTGTTGGTGTCATGAGGCTTTTTATTAATGGTATATAGAGGCTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4632#0 GAGAGATTCAGAGGCAGAGCCGCGAGCCCCACGACACCCTCCTCCTCCTCTCCCTATCCC 60 consensus_4632#1 ------------------------------------------------------------ consensus_4632#0 CTTCTCCCCCAAATCATCCTTCTCAAAATCAAAGGCTCCGGGTGGTGAGCGCTAATCGAG 120 consensus_4632#1 ------------------------------------------CGTCGTCCTCTCCCCCGA 18 * * * ** * consensus_4632#0 AGGGATTAGTTGTTCGCGGAGATCGCCGCTATGC----AGGAAGCTCTTCTACCTCCGGC 176 consensus_4632#1 ATCAGCTGGTCTCTAGCTTCGATCGGCACTGCCCCGAGAGGAAGCGCTTGTCTCCCCGGT 78 * * ** * ** ***** * ** * ******* *** * * **** consensus_4632#0 TCATCCAGGCCGCTTCTACTCGGACTTTGGCCCGAAGCCGTTCGGCAGCGGAGATCAACG 236 consensus_4632#1 GCG---------------CTCGGCATTGGAGCTCAAGCCGTTCAACTTCGGAGACCAGCG 123 * ***** ** * * ********* * ****** ** ** consensus_4632#0 GCTC---TCCTCGCCCAACCTGCTGACCAACGGTGGAGATCTCTTCTACGGCTGCTACTC 293 consensus_4632#1 GCTCGCGTCCTCGCCGCGCTACCTCCCCAGCGGCGACGACGCCCTGTACCGCTGCTCCTC 183 **** ******** * ** *** *** * ** * * *** ****** *** consensus_4632#0 CCCCTTCAGCCCTACCCGCGTGCTCTCGCCGCCGCCGCCGCGGCGCGCCGCCTCGTTCTC 353 consensus_4632#1 CCCCTTCAGCCCCAGCTTCGGGTTCTCCTCGCCGTCGCCGCTA---GCCACCTCCGTCTC 240 ************ * * ** * **** ***** ****** *** **** **** consensus_4632#0 CCACTGCTCGTCCTCCTCCGACTCCGTCGTCGACGACGGAGATGGTGCGGGGGCAGCGGC 413 consensus_4632#1 GCTCTCGCCGTCCTCCTCCGCCTCCCTCGTCGATGACGGCGACGACGGAGGAGCGGCCGC 300 * ** ************ **** ******* ***** ** * * ** ** ** ** consensus_4632#0 AG---CGACCGAGCACCGCCTCCACCTCGCCCACCTCGCGCTCCAGTACCAGGAGATGGC 470 consensus_4632#1 CGACGCCACGGGGCAGCGGCTCCAGCTCGCGCGCCTCGCGCTGCAGTACCAGGAGGTGGC 360 * * ** * *** ** ***** ***** * ********* ************ **** consensus_4632#0 CAACCGCTTCGAGCTCTGCCTCTCCCACCTCGCCGATGCCGCGGACGAGGCGGCCGCGCT 530 consensus_4632#1 CGACCGCTACGAGCTTTGCCTCTCCCACCTCGCCGAGGCCGCCGAAGAGGCGGCGGCGCT 420 * ****** ****** ******************** ***** ** ******** ***** consensus_4632#0 CCGTCAGGAGAACGCCGAGCTCCGCGTCGCCAACAACGACCTCGCATGCCGCATCGCCAA 590 consensus_4632#1 CCGTCTTGAGAACGCCGAGCTCCGCGTCACCAACAGCGACCTCGCCCTCCGTCTCGCGCT 480 ***** ********************* ****** ********* *** **** consensus_4632#0 GTTCGGCGGAAGGCAGAGCTCCGCCATCGCCCTCGCCGGTGACCTCCGCCGCCTCCGCCT 650 consensus_4632#1 GCTCAGCGGGAAGCATACCGCCGCCGTCGCCGTCGCCGACGAGATCCGTCGGCTCCGCCT 540 * ** **** * *** * * ***** ***** ****** ** **** ** ******** consensus_4632#0 CCCCAAGGAGCAGACCGTGCCAGCTCTTCCTCCTCCGCCGCAGTCTCCGCCGGCCGCACT 710 consensus_4632#1 CGGCGAGCAGAAGGTCGCGGCCGCCACCAAGGAGCGCACGCCCGAGAAGCTCGCCGTGCT 600 * * ** ** ** ** * * ** * *** ** **** ** consensus_4632#0 GATGAATCCCGTCGCCGTCCCCGAGAAGCAGGCTGTTCTT--CCGAAG-AGCATCTCCAT 767 consensus_4632#1 GCCGAAGAGCATCTCCGTG--CGGTCCACAAGCTACCTCAAGCTGAACCAGCAATCCCAG 658 * *** * ** **** ** ** *** * *** **** *** consensus_4632#0 CCGTTCGACCGGATACCAGAAGCTGAACCAGGGCGGCAAGCATCGCGTGTCGAAGCCGGT 827 consensus_4632#1 GCCGCCACCGCCACTTCGGCGGC----CCCCAACCGCAAGCCCCGCACGTC------GTC 708 * * * * * * ** ** * ****** *** *** * consensus_4632#0 GAACGTCGGCTCGCAGCGCGTGTTCGTGGGCATTGACGGCGCGGAGGGAGGCGAGCACAA 887 consensus_4632#1 GAAC-CCAACCAACCCCCCGAACTCGCAGC--------GCGCGTACGACGGCGGCAAGAA 759 **** * * * * ** *** * ***** * * **** * ** consensus_4632#0 AGTTGGTGTGAAGAAGGAGGAGCCGCCCATGGGTGGGCTGGAGTTCGAGGTGTACAACCA 947 consensus_4632#1 AGGCGACGAGCAGAAGGCGCAACCCGCGGACAGCGGCGCGGAGCTGGAGGTGTACAACCA 819 ** * * * ****** * * ** * * ** **** * ************** consensus_4632#0 GGGCATGTTCAAGACGGAGCTGTGCAACAAGTGGGAGGAGACCGGGGCTTGCCCCTACGG 1007 consensus_4632#1 GGGCATGTTCAAGACGGAGCTGTGCAACAAGTGGGAGGAGACGGGAGACTGCCCCTACGG 879 ****************************************** ** * *********** consensus_4632#0 CGACCAGTGCCAGTTCGCCCACGGCGTCGCGGAGCTCCGCCCCGTCATCCGCCACCCTCG 1067 consensus_4632#1 CGACCAGTGCCAGTTCGCGCACGGCGTCACCGAGCTCCGCCCCGTCATCCGCCACCCTCG 939 ****************** ********* * ***************************** consensus_4632#0 CTACAAGACCCAGGTCTGCCGCATGGTGCTCGCCGGCGGCGTCTGCCCCTACGGCCACCG 1127 consensus_4632#1 CTACAAGACCGCGGTGTGCCGCATGGTGCTCGCCGGCGACGTCTGCCCCTACGGCCACCG 999 ********** *** ********************** ********************* consensus_4632#0 CTGCCACTTCCGCCACTCCATCACCCCCGCCGACCGCTTC-TCCTTCGGCCATTGATCAT 1186 consensus_4632#1 TTGCCACTTCCGCCACTCGCTCACCCCCGCCGAACGCCTCCTCCTCCGATCCTAGCTAAA 1059 ***************** ************* *** ** **** ** * * * * * consensus_4632#0 ACGTATCAGTCCATCACCGATC------GCCACTCT-----CTCACTCCCTCCTAATCTC 1235 consensus_4632#1 TTAAGGCAGTGCGCGGCCAGTCTTTTGCACCACCTGGATGGTTTATTGCTTTCGCATGTA 1119 **** * ** ** **** * * * * * * ** * consensus_4632#0 CTCTCTCTTTGATAATGACATGAAAAGAGGGGGAAAAAAAGAAGAGGCCGTAAATAAGGT 1295 consensus_4632#1 TACTATATACGATTAT-ACACACGAAAATGTACAAAAATACGA-ACATCGTAAATAACAC 1177 ** * * *** ** *** ** * * ***** * * * ********* consensus_4632#0 ATACTATTTAGTTGCACAAAGCAAATGAGAACTGAATTATACAATTAGCA-CACAGGC-- 1352 consensus_4632#1 ATAAGAGGTA--CGTACAGGGTACAGGA-AGCCATATGGTAGAGCTAGTAGCACCGATAT 1234 *** * ** * *** * * * ** * * ** ** * *** * *** * consensus_4632#0 -GAAATGTGAATACT---AGAGAGTTATAGCTATTAAGTTG---TGGTCAGATATGTGAG 1405 consensus_4632#1 TGTAATGTGAATATCCACAAACAGGATTAGTGTTTTCGTCAGCTCGATCGGGTTCAGGGA 1294 * ********** * * ** *** ** ** * ** * * * consensus_4632#0 TTATTACATTGG--GGGTTATTTGTCCTATGGTT------CATATTGTTATATAGGTTAT 1457 consensus_4632#1 CT-TCAGATTCGTCAGTTTGTTCATATTCTGTTCAGAAGACGTGGTACTATAAGGCCCGT 1353 * * * *** * * ** ** * * ** * * * * **** * * consensus_4632#0 TATGATCTTGTTTCCTTGTTTCGTTTTAAGCAAACCGGGTGACAAATTGTTGGACTCA-- 1515 consensus_4632#1 AAGGACGTGGATTCGCAAGTACTACTTCAAAAGTGCAGGTGTGAAATCCCCAGAAAGAAA 1413 * ** * * *** * * ** * * * **** **** ** * consensus_4632#0 TGTAAGTAA-GGCTGTTATTTGGATATCTGAATTATGTATGGAACACTTGTACGCTATGA 1574 consensus_4632#1 TGTGGCTGACGACTGTCATTTTGTTGGTGTCATGAGGCTTTT--TATTAATGGTATATAG 1471 *** * * * **** **** * * ** * * * * * * *** consensus_4632#0 AAGTGCCTGAAGGC 1588 consensus_4632#1 AGGCTCTT------ 1479 * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||