|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4632#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1588 fasta sequence
[GAGAGATTCAGAGGCAGAGCCGCGAGCCCCACGACACCCTCCTCCTCCTCTCCCTATCCCCTTCTCCCCCAAATCATCCTTCTCAAAATCAAAGGCTCCGGGTGGTGAGCGCTAATCGAGAGGGATTAGTTGTTCGCGGAGATCGCCGCTATGCAGGAAGCTCTTCTACCTCCGGCTCATCCAGGCCGCTTCTACTCGGACTTTGGCCCGAAGCCGTTCGGCAGCGGAGATCAACGGCTCTCCTCGCCCAACCTGCTGACCAACGGTGGAGATCTCTTCTACGGCTGCTACTCCCCCTTCAGCCCTACCCGCGTGCTCTCGCCGCCGCCGCCGCGGCGCGCCGCCTCGTTCTCCCACTGCTCGTCCTCCTCCGACTCCGTCGTCGACGACGGAGATGGTGCGGGGGCAGCGGCAGCGACCGAGCACCGCCTCCACCTCGCCCACCTCGCGCTCCAGTACCAGGAGATGGCCAACCGCTTCGAGCTCTGCCTCTCCCACCTCGCCGATGCCGCGGACGAGGCGGCCGCGCTCCGTCAGGAGAACGCCGAGCTCCGCGTCGCCAACAACGACCTCGCATGCCGCATCGCCAAGTTCGGCGGAAGGCAGAGCTCCGCCATCGCCCTCGCCGGTGACCTCCGCCGCCTCCGCCTCCCCAAGGAGCAGACCGTGCCAGCTCTTCCTCCTCCGCCGCAGTCTCCGCCGGCCGCACTGATGAATCCCGTCGCCGTCCCCGAGAAGCAGGCTGTTCTTCCGAAGAGCATCTCCATCCGTTCGACCGGATACCAGAAGCTGAACCAGGGCGGCAAGCATCGCGTGTCGAAGCCGGTGAACGTCGGCTCGCAGCGCGTGTTCGTGGGCATTGACGGCGCGGAGGGAGGCGAGCACAAAGTTGGTGTGAAGAAGGAGGAGCCGCCCATGGGTGGGCTGGAGTTCGAGGTGTACAACCAGGGCATGTTCAAGACGGAGCTGTGCAACAAGTGGGAGGAGACCGGGGCTTGCCCCTACGGCGACCAGTGCCAGTTCGCCCACGGCGTCGCGGAGCTCCGCCCCGTCATCCGCCACCCTCGCTACAAGACCCAGGTCTGCCGCATGGTGCTCGCCGGCGGCGTCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACTCCATCACCCCCGCCGACCGCTTCTCCTTCGGCCATTGATCATACGTATCAGTCCATCACCGATCGCCACTCTCTCACTCCCTCCTAATCTCCTCTCTCTTTGATAATGACATGAAAAGAGGGGGAAAAAAAGAAGAGGCCGTAAATAAGGTATACTATTTAGTTGCACAAAGCAAATGAGAACTGAATTATACAATTAGCACACAGGCGAAATGTGAATACTAGAGAGTTATAGCTATTAAGTTGTGGTCAGATATGTGAGTTATTACATTGGGGGTTATTTGTCCTATGGTTCATATTGTTATATAGGTTATTATGATCTTGTTTCCTTGTTTCGTTTTAAGCAAACCGGGTGACAAATTGTTGGACTCATGTAAGTAAGGCTGTTATTTGGATATCTGAATTATGTATGGAACACTTGTACGCTATGAAAGTGCCTGAAGGC]
[+] EMBL AK106354 [GAGAGATTCAGAGGCAGAGCCGCGAGCCCCACGACACCCTCCTCCTCCTCTCCCTATCCCCTTCTCCCCCAAATCATCCTTCTCAAAATCAAAGGCTCCGGGTGGTGAGCGCTAATCGAGAGGGATTAGTTGTTCGCGGAGATCGCCGCTATGCAGGAAGCTCTTCTACCTCCGGCTCATCCAGGCCGCTTCTACTCGGACTTTGGCCCGAAGCCGTTCGGCAGCGGAGATCAACGGCTCTCCTCGCCCAACCTGCTGACCAACGGTGGAGATCTCTTCTACGGCTGCTACTCCCCCTTCAGCCCTACCCGCGTGCTCTCGCCGCCGCCGCCGCGGCGCGCCGCCTCGTTCTCCCACTGCTCGTCCTCCTCCGACTCCGTCGTCGACGACGGAGATGGTGCGGGGGCAGCGGCAGCGACCGAGCACCGCCTCCACCTCGCCCACCTCGCGCTCCAGTACCAGGAGATGGCCAACCGCTTCGAGCTCTGCCTCTCCCACCTCGCCGATGCCGCGGACGAGGCGGCCGCGCTCCGTCAGGAGAACGCCGAGCTCCGCGTCGCCAACAACGACCTCGCATGCCGCATCGCCAAGTTCGGCGGAAGGCAGAGCTCCGCCATCGCCCTCGCCGGTGACCTCCGCCGCCTCCGCCTCCCCAAGGAGCAGACCGTGCCAGCTCTTCCTCCTCCGCCGCAGTCTCCGCCGGCCGCACTGATGAATCCCGTCGCCGTCCCCGAGAAGCAGGCTGTTCTTCCGAAGAGCATCTCCATCCGTTCGACCGGATACCAGAAGCTGAACCAGGGCGGCAAGCATCGCGTGTCGAAGCCGGTGAACGTCGGCTCGCAGCGCGTGTTCGTGGGCATTGACGGCGCGGAGGGAGGCGAGCACAAAGTTGGTGTGAAGAAGGAGGAGCCGCCCATGGGTGGGCTGGAGTTCGAGGTGTACAACCAGGGCATGTTCAAGACGGAGCTGTGCAACAAGTGGGAGGAGACCGGGGCTTGCCCCTACGGCGACCAGTGCCAGTTCGCCCACGGCGTCGCGGAGCTCCGCCCCGTCATCCGCCACCCTCGCTACAAGACCCAGGTCTGCCGCATGGTGCTCGCCGGCGGCGTCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACTCCATCACCCCCGCCGACCGCTTCTCCTTCGGCCATTGATCATACGTATCAGTCCATCACCGATCGCCACTCTCTCACTCCCTCCTAATCTCCTCTCTCTTTGATAATGACATGAAAAGAGGGGGAAAAAAAGAAGAGGCCGTAAATAAGGTATACTATTTAGTTGCACAAAGCAAATGAGAACTGAATTATACAATTAGCACACAGGCGAAATGTGAATACTAGAGAGTTATAGCTATTAAGTTGTGGTCAGATATGTGAGTTATTACATTGGGGGTTATTTGTCCTATGGTTCATATTGTTATATAGGTTATTATGATCTTGTTTCCTTGTTTCGTTTTAAGCAAACCGGGTGACAAATTGTTGGACTCATGTAAGTAAGGCTGTTATTTGGATATCTGAATTATGTATGGAACACTTGTACGCTATGAAAGTGCCTGAAGGC]
consensusID : consensus_4632#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1479 fasta sequence
[CGTCGTCCTCTCCCCCGAATCAGCTGGTCTCTAGCTTCGATCGGCACTGCCCCGAGAGGAAGCGCTTGTCTCCCCGGTGCGCTCGGCATTGGAGCTCAAGCCGTTCAACTTCGGAGACCAGCGGCTCGCGTCCTCGCCGCGCTACCTCCCCAGCGGCGACGACGCCCTGTACCGCTGCTCCTCCCCCTTCAGCCCCAGCTTCGGGTTCTCCTCGCCGTCGCCGCTAGCCACCTCCGTCTCGCTCTCGCCGTCCTCCTCCGCCTCCCTCGTCGATGACGGCGACGACGGAGGAGCGGCCGCCGACGCCACGGGGCAGCGGCTCCAGCTCGCGCGCCTCGCGCTGCAGTACCAGGAGGTGGCCGACCGCTACGAGCTTTGCCTCTCCCACCTCGCCGAGGCCGCCGAAGAGGCGGCGGCGCTCCGTCTTGAGAACGCCGAGCTCCGCGTCACCAACAGCGACCTCGCCCTCCGTCTCGCGCTGCTCAGCGGGAAGCATACCGCCGCCGTCGCCGTCGCCGACGAGATCCGTCGGCTCCGCCTCGGCGAGCAGAAGGTCGCGGCCGCCACCAAGGAGCGCACGCCCGAGAAGCTCGCCGTGCTGCCGAAGAGCATCTCCGTGCGGTCCACAAGCTACCTCAAGCTGAACCAGCAATCCCAGGCCGCCACCGCCACTTCGGCGGCCCCCAACCGCAAGCCCCGCACGTCGTCGAACCCAACCAACCCCCCGAACTCGCAGCGCGCGTACGACGGCGGCAAGAAAGGCGACGAGCAGAAGGCGCAACCCGCGGACAGCGGCGCGGAGCTGGAGGTGTACAACCAGGGCATGTTCAAGACGGAGCTGTGCAACAAGTGGGAGGAGACGGGAGACTGCCCCTACGGCGACCAGTGCCAGTTCGCGCACGGCGTCACCGAGCTCCGCCCCGTCATCCGCCACCCTCGCTACAAGACCGCGGTGTGCCGCATGGTGCTCGCCGGCGACGTCTGCCCCTACGGCCACCGTTGCCACTTCCGCCACTCGCTCACCCCCGCCGAACGCCTCCTCCTCCGATCCTAGCTAAATTAAGGCAGTGCGCGGCCAGTCTTTTGCACCACCTGGATGGTTTATTGCTTTCGCATGTATACTATATACGATTATACACACGAAAATGTACAAAAATACGAACATCGTAAATAACACATAAGAGGTACGTACAGGGTACAGGAAGCCATATGGTAGAGCTAGTAGCACCGATATTGTAATGTGAATATCCACAAACAGGATTAGTGTTTTCGTCAGCTCGATCGGGTTCAGGGACTTCAGATTCGTCAGTTTGTTCATATTCTGTTCAGAAGACGTGGTACTATAAGGCCCGTAAGGACGTGGATTCGCAAGTACTACTTCAAAAGTGCAGGTGTGAAATCCCCAGAAAGAAATGTGGCTGACGACTGTCATTTTGTTGGTGTCATGAGGCTTTTTATTAATGGTATATAGAGGCTCTT]
[+] EMBL AK108658 [CGTCGTCCTCTCCCCCGAATCAGCTGGTCTCTAGCTTCGATCGGCACTGCCCCGAGAGGAAGCGCTTGTCTCCCCGGTGCGCTCGGCATTGGAGCTCAAGCCGTTCAACTTCGGAGACCAGCGGCTCGCGTCCTCGCCGCGCTACCTCCCCAGCGGCGACGACGCCCTGTACCGCTGCTCCTCCCCCTTCAGCCCCAGCTTCGGGTTCTCCTCGCCGTCGCCGCTAGCCACCTCCGTCTCGCTCTCGCCGTCCTCCTCCGCCTCCCTCGTCGATGACGGCGACGACGGAGGAGCGGCCGCCGACGCCACGGGGCAGCGGCTCCAGCTCGCGCGCCTCGCGCTGCAGTACCAGGAGGTGGCCGACCGCTACGAGCTTTGCCTCTCCCACCTCGCCGAGGCCGCCGAAGAGGCGGCGGCGCTCCGTCTTGAGAACGCCGAGCTCCGCGTCACCAACAGCGACCTCGCCCTCCGTCTCGCGCTGCTCAGCGGGAAGCATACCGCCGCCGTCGCCGTCGCCGACGAGATCCGTCGGCTCCGCCTCGGCGAGCAGAAGGTCGCGGCCGCCACCAAGGAGCGCACGCCCGAGAAGCTCGCCGTGCTGCCGAAGAGCATCTCCGTGCGGTCCACAAGCTACCTCAAGCTGAACCAGCAATCCCAGGCCGCCACCGCCACTTCGGCGGCCCCCAACCGCAAGCCCCGCACGTCGTCGAACCCAACCAACCCCCCGAACTCGCAGCGCGCGTACGACGGCGGCAAGAAAGGCGACGAGCAGAAGGCGCAACCCGCGGACAGCGGCGCGGAGCTGGAGGTGTACAACCAGGGCATGTTCAAGACGGAGCTGTGCAACAAGTGGGAGGAGACGGGAGACTGCCCCTACGGCGACCAGTGCCAGTTCGCGCACGGCGTCACCGAGCTCCGCCCCGTCATCCGCCACCCTCGCTACAAGACCGCGGTGTGCCGCATGGTGCTCGCCGGCGACGTCTGCCCCTACGGCCACCGTTGCCACTTCCGCCACTCGCTCACCCCCGCCGAACGCCTCCTCCTCCGATCCTAGCTAAATTAAGGCAGTGCGCGGCCAGTCTTTTGCACCACCTGGATGGTTTATTGCTTTCGCATGTATACTATATACGATTATACACACGAAAATGTACAAAAATACGAACATCGTAAATAACACATAAGAGGTACGTACAGGGTACAGGAAGCCATATGGTAGAGCTAGTAGCACCGATATTGTAATGTGAATATCCACAAACAGGATTAG ]
[+] EMBL AU162339 [ GAAGCCATATGGTAGAGCTAGTAGCACCGATATTGTAATGTGAATATCCACAAACAGGATTAGTGTTTTCGTCAGCTCGATCGGGTTCAGGGACTTCAGATTCGTCAGTTTGTTCATATTCTGTTCAGAAGACGTGGTACTATAAGGCCCGTAAGGACGTGGATTCGCAAGTACTACTTCAAAAGTGCAGGTGTGAAATCCCCAGAAAGAAATGTGGCTGACGACTGTCATTTTGTTGGTGTCATGAGGCTTTTTATTAATGGTATATAGAGGCTCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4632#0 GAGAGATTCAGAGGCAGAGCCGCGAGCCCCACGACACCCTCCTCCTCCTCTCCCTATCCC 60
consensus_4632#1 ------------------------------------------------------------
consensus_4632#0 CTTCTCCCCCAAATCATCCTTCTCAAAATCAAAGGCTCCGGGTGGTGAGCGCTAATCGAG 120
consensus_4632#1 ------------------------------------------CGTCGTCCTCTCCCCCGA 18
* * * ** *
consensus_4632#0 AGGGATTAGTTGTTCGCGGAGATCGCCGCTATGC----AGGAAGCTCTTCTACCTCCGGC 176
consensus_4632#1 ATCAGCTGGTCTCTAGCTTCGATCGGCACTGCCCCGAGAGGAAGCGCTTGTCTCCCCGGT 78
* * ** * ** ***** * ** * ******* *** * * ****
consensus_4632#0 TCATCCAGGCCGCTTCTACTCGGACTTTGGCCCGAAGCCGTTCGGCAGCGGAGATCAACG 236
consensus_4632#1 GCG---------------CTCGGCATTGGAGCTCAAGCCGTTCAACTTCGGAGACCAGCG 123
* ***** ** * * ********* * ****** ** **
consensus_4632#0 GCTC---TCCTCGCCCAACCTGCTGACCAACGGTGGAGATCTCTTCTACGGCTGCTACTC 293
consensus_4632#1 GCTCGCGTCCTCGCCGCGCTACCTCCCCAGCGGCGACGACGCCCTGTACCGCTGCTCCTC 183
**** ******** * ** *** *** * ** * * *** ****** ***
consensus_4632#0 CCCCTTCAGCCCTACCCGCGTGCTCTCGCCGCCGCCGCCGCGGCGCGCCGCCTCGTTCTC 353
consensus_4632#1 CCCCTTCAGCCCCAGCTTCGGGTTCTCCTCGCCGTCGCCGCTA---GCCACCTCCGTCTC 240
************ * * ** * **** ***** ****** *** **** ****
consensus_4632#0 CCACTGCTCGTCCTCCTCCGACTCCGTCGTCGACGACGGAGATGGTGCGGGGGCAGCGGC 413
consensus_4632#1 GCTCTCGCCGTCCTCCTCCGCCTCCCTCGTCGATGACGGCGACGACGGAGGAGCGGCCGC 300
* ** ************ **** ******* ***** ** * * ** ** ** **
consensus_4632#0 AG---CGACCGAGCACCGCCTCCACCTCGCCCACCTCGCGCTCCAGTACCAGGAGATGGC 470
consensus_4632#1 CGACGCCACGGGGCAGCGGCTCCAGCTCGCGCGCCTCGCGCTGCAGTACCAGGAGGTGGC 360
* * ** * *** ** ***** ***** * ********* ************ ****
consensus_4632#0 CAACCGCTTCGAGCTCTGCCTCTCCCACCTCGCCGATGCCGCGGACGAGGCGGCCGCGCT 530
consensus_4632#1 CGACCGCTACGAGCTTTGCCTCTCCCACCTCGCCGAGGCCGCCGAAGAGGCGGCGGCGCT 420
* ****** ****** ******************** ***** ** ******** *****
consensus_4632#0 CCGTCAGGAGAACGCCGAGCTCCGCGTCGCCAACAACGACCTCGCATGCCGCATCGCCAA 590
consensus_4632#1 CCGTCTTGAGAACGCCGAGCTCCGCGTCACCAACAGCGACCTCGCCCTCCGTCTCGCGCT 480
***** ********************* ****** ********* *** ****
consensus_4632#0 GTTCGGCGGAAGGCAGAGCTCCGCCATCGCCCTCGCCGGTGACCTCCGCCGCCTCCGCCT 650
consensus_4632#1 GCTCAGCGGGAAGCATACCGCCGCCGTCGCCGTCGCCGACGAGATCCGTCGGCTCCGCCT 540
* ** **** * *** * * ***** ***** ****** ** **** ** ********
consensus_4632#0 CCCCAAGGAGCAGACCGTGCCAGCTCTTCCTCCTCCGCCGCAGTCTCCGCCGGCCGCACT 710
consensus_4632#1 CGGCGAGCAGAAGGTCGCGGCCGCCACCAAGGAGCGCACGCCCGAGAAGCTCGCCGTGCT 600
* * ** ** ** ** * * ** * *** ** **** **
consensus_4632#0 GATGAATCCCGTCGCCGTCCCCGAGAAGCAGGCTGTTCTT--CCGAAG-AGCATCTCCAT 767
consensus_4632#1 GCCGAAGAGCATCTCCGTG--CGGTCCACAAGCTACCTCAAGCTGAACCAGCAATCCCAG 658
* *** * ** **** ** ** *** * *** **** ***
consensus_4632#0 CCGTTCGACCGGATACCAGAAGCTGAACCAGGGCGGCAAGCATCGCGTGTCGAAGCCGGT 827
consensus_4632#1 GCCGCCACCGCCACTTCGGCGGC----CCCCAACCGCAAGCCCCGCACGTC------GTC 708
* * * * * * ** ** * ****** *** *** *
consensus_4632#0 GAACGTCGGCTCGCAGCGCGTGTTCGTGGGCATTGACGGCGCGGAGGGAGGCGAGCACAA 887
consensus_4632#1 GAAC-CCAACCAACCCCCCGAACTCGCAGC--------GCGCGTACGACGGCGGCAAGAA 759
**** * * * * ** *** * ***** * * **** * **
consensus_4632#0 AGTTGGTGTGAAGAAGGAGGAGCCGCCCATGGGTGGGCTGGAGTTCGAGGTGTACAACCA 947
consensus_4632#1 AGGCGACGAGCAGAAGGCGCAACCCGCGGACAGCGGCGCGGAGCTGGAGGTGTACAACCA 819
** * * * ****** * * ** * * ** **** * **************
consensus_4632#0 GGGCATGTTCAAGACGGAGCTGTGCAACAAGTGGGAGGAGACCGGGGCTTGCCCCTACGG 1007
consensus_4632#1 GGGCATGTTCAAGACGGAGCTGTGCAACAAGTGGGAGGAGACGGGAGACTGCCCCTACGG 879
****************************************** ** * ***********
consensus_4632#0 CGACCAGTGCCAGTTCGCCCACGGCGTCGCGGAGCTCCGCCCCGTCATCCGCCACCCTCG 1067
consensus_4632#1 CGACCAGTGCCAGTTCGCGCACGGCGTCACCGAGCTCCGCCCCGTCATCCGCCACCCTCG 939
****************** ********* * *****************************
consensus_4632#0 CTACAAGACCCAGGTCTGCCGCATGGTGCTCGCCGGCGGCGTCTGCCCCTACGGCCACCG 1127
consensus_4632#1 CTACAAGACCGCGGTGTGCCGCATGGTGCTCGCCGGCGACGTCTGCCCCTACGGCCACCG 999
********** *** ********************** *********************
consensus_4632#0 CTGCCACTTCCGCCACTCCATCACCCCCGCCGACCGCTTC-TCCTTCGGCCATTGATCAT 1186
consensus_4632#1 TTGCCACTTCCGCCACTCGCTCACCCCCGCCGAACGCCTCCTCCTCCGATCCTAGCTAAA 1059
***************** ************* *** ** **** ** * * * * *
consensus_4632#0 ACGTATCAGTCCATCACCGATC------GCCACTCT-----CTCACTCCCTCCTAATCTC 1235
consensus_4632#1 TTAAGGCAGTGCGCGGCCAGTCTTTTGCACCACCTGGATGGTTTATTGCTTTCGCATGTA 1119
**** * ** ** **** * * * * * * ** *
consensus_4632#0 CTCTCTCTTTGATAATGACATGAAAAGAGGGGGAAAAAAAGAAGAGGCCGTAAATAAGGT 1295
consensus_4632#1 TACTATATACGATTAT-ACACACGAAAATGTACAAAAATACGA-ACATCGTAAATAACAC 1177
** * * *** ** *** ** * * ***** * * * *********
consensus_4632#0 ATACTATTTAGTTGCACAAAGCAAATGAGAACTGAATTATACAATTAGCA-CACAGGC-- 1352
consensus_4632#1 ATAAGAGGTA--CGTACAGGGTACAGGA-AGCCATATGGTAGAGCTAGTAGCACCGATAT 1234
*** * ** * *** * * * ** * * ** ** * *** * *** *
consensus_4632#0 -GAAATGTGAATACT---AGAGAGTTATAGCTATTAAGTTG---TGGTCAGATATGTGAG 1405
consensus_4632#1 TGTAATGTGAATATCCACAAACAGGATTAGTGTTTTCGTCAGCTCGATCGGGTTCAGGGA 1294
* ********** * * ** *** ** ** * ** * * *
consensus_4632#0 TTATTACATTGG--GGGTTATTTGTCCTATGGTT------CATATTGTTATATAGGTTAT 1457
consensus_4632#1 CT-TCAGATTCGTCAGTTTGTTCATATTCTGTTCAGAAGACGTGGTACTATAAGGCCCGT 1353
* * * *** * * ** ** * * ** * * * * **** * *
consensus_4632#0 TATGATCTTGTTTCCTTGTTTCGTTTTAAGCAAACCGGGTGACAAATTGTTGGACTCA-- 1515
consensus_4632#1 AAGGACGTGGATTCGCAAGTACTACTTCAAAAGTGCAGGTGTGAAATCCCCAGAAAGAAA 1413
* ** * * *** * * ** * * * **** **** ** *
consensus_4632#0 TGTAAGTAA-GGCTGTTATTTGGATATCTGAATTATGTATGGAACACTTGTACGCTATGA 1574
consensus_4632#1 TGTGGCTGACGACTGTCATTTTGTTGGTGTCATGAGGCTTTT--TATTAATGGTATATAG 1471
*** * * * **** **** * * ** * * * * * * ***
consensus_4632#0 AAGTGCCTGAAGGC 1588
consensus_4632#1 AGGCTCTT------ 1479
* * * *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||