These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_464#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1324 fasta sequence [ACTCCAATCCCCACATCGGCAGCACATCCCCCTTCGCTCCCCTCCTCGTCGCCCTCCTCTGCCCTCCCCTCCCCTCCTTCCGGAACCTTCTAGATGCTTCTCACGCGAAGGTTCTCCTCCGCCCTCGCGCGCTCCCCCCTTCTCCCCAGGTCCCTCCCTCCTCCGCGGGCCGTGCCCGCCACCCCTCCGGCGCCCCGCCCGCCGCCGCGCCGCCTCATGTCCTCCTCCTCCTCCGGCTGGCACCACTCCTCTCGCCCGCCCCCGCCGCCCCCCTCCGGCGCCGACAAGGATCAGCTGTTCCGGGGGCTGGAGGCGGCGCTCGGCACGACGTTCAGCTCGGAGCCGCTCGCGCCGCCGCCGCAGCCGATGATCCTCGTCATCAGCGGGCCCAGCGGCGTCGGCAAGGACGCTGTCATCCAGAGGCTGCAAGAAGAGAGGGAGGGGATGCATTTCGTTGTCACCGCGACAAGCAGAGCGAAGCGGCCCGGTGAAGTTGATGGGAAGGACTATTACTTCGTCACCAAGGAGGAGTTCCTCACGATGATTGAAAGGAAGGAGTTGCTCGAGTACGCACTTGTCTATGGGGAGTATAAGGGGATCCCCAAGCAGCAGATCCGTGATTACATGGCGAAAGGTTATGATATTGTCTTGAGAGTGGACATTCAAGGAGCAGCAACCTTGAGAGAGATTCTTGGCGAATCAGCAATCTTCATCTTTTTGGTTGCAGAGAGTGAAGAGGCACTTGTCAAAAGGCTAATTCACCGCAAAACAGAAACATCAGATATGCTTCTTGTCAGAGTTGCAACGGCCAGAGAAGAGGTGAAACGCATGAACAATTTTGATTATGTAGTTGTCAATTCTGAAGGGAATCTTGAGGGGGCTGTTAAACAGGTGGAGTCTATCATTGATGCTGAGAAGGCTAAGGTCCACAAACGTACGGTTAATATCTAGTCAATGCTCATAAGTCACATGCTCTTTTAACGGTTTGGAGGAAAATTACCTGGTATTTTTAATCAATTCAAGTTTGAACTATTGTGGAGGAAATCGCCAATGACAATCTGACCTGACTCTTACAAAAAAGGCCAATTTGACTTACATTAAATTTGTAGCTGTAAGTCAGAAAGTGAAGTGCATGGCAAGTCATTGGAGTTAAATACTGAATATCCTGATTCAAGTGGCTTATAACAGCAATGTACTTGTGCAACTCTTTCTGGGTAGAAGTAGGTACTTTTTATTATTTATATATTATCTGTATTTTATTTGTTTGTTCGAATATTACAAACTACTAATAACTGCTTGGGATGAATCCTTATGCTACGGATAT] [+] EMBL AK106255 [ACTCCAATCCCCACATCGGCAGCACATCCCCCTTCGCTCCCCTCCTCGTCGCCCTCCTCTGCCCTCCCCTCCCCTCCTTCCGGAACCTTCTAGATGCTTCTCACGCGAAGGTTCTCCTCCGCCCTCGCGCGCTCCCCCCTTCTCCCCAGGTCCCTCCCTCCTCCGCGGGCCGTGCCCGCCACCCCTCCGGCGCCCCGCCCGCCGCCGCGCCGCCTCATGTCCTCCTCCTCCTCCGGCTGGCACCACTCCTCTCGCCCGCCCCCGCCGCCCCCCTCCGGCGCCGACAAGGATCAGCTGTTCCGGGGGCTGGAGGCGGCGCTCGGCACGACGTTCAGCTCGGAGCCGCTCGCGCCGCCGCCGCAGCCGATGATCCTCGTCATCAGCGGGCCCAGCGGCGTCGGCAAGGACGCTGTCATCCAGAGGCTGCAAGAAGAGAGGGAGGGGATGCATTTCGTTGTCACCGCGACAAGCAGAGCGAAGCGGCCCGGTGAAGTTGATGGGAAGGACTATTACTTCGTCACCAAGGAGGAGTTCCTCACGATGATTGAAAGGAAGGAGTTGCTCGAGTACGCACTTGTCTATGGGGAGTATAAGGGGATCCCCAAGCAGCAGATCCGTGATTACATGGCGAAAGGTTATGATATTGTCTTGAGAGTGGACATTCAAGGAGCAGCAACCTTGAGAGAGATTCTTGGCGAATCAGCAATCTTCATCTTTTTGGTTGCAGAGAGTGAAGAGGCACTTGTCAAAAGGCTAATTCACCGCAAAACAGAAACATCAGATATGCTTCTTGTCAGAGTTGCAACGGCCAGAGAAGAGGTGAAACGCATGAACAATTTTGATTATGTAGTTGTCAATTCTGAAGGGAATCTTGAGGGGGCTGTTAAACAGGTGGAGTCTATCATTGATGCTGAGAAGGCTAAGGTCCACAAACGTACGGTTAATATCTAGTCAATGCTCATAAGTCACATGCTCTTTTAACGGTTTGGAGGAAAATTACCTGGTATTTTTAATCAATTCAAGTTTGAACTATTGTGGAGGAAATCGCCAATGACAATCTGACCTGACTCTTACAAAAAAGGCCAATTTGACTTACATTAAATTTGTAGCTGTAAGTCAGAAAGTGAAGTGCATGGCAAGTCATTGGAGTTAAATACTGAATATCCTGATTCAAGTGGCTTATAACAGCAATGTACTTGTGCAACTCTTTCTGGGTAGAAGTAGGTACTTTTTATTATTTATATATTATCTGTATTTTATTTGTTTGTTCGAATATTACAAACTACTAATAACTGCTTGGGATGAATCCTTATGCTACGGATAT] consensusID : consensus_464#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 196 fasta sequence [AATCAGCAATTTTCATCTTTTTGGTTGCAGAGAGTGAAGAGGCACTTGTCAAAAGGCTATATCTACCGCAAACAGAAACTACAGTATAGCTTCTTGTCAGAGTTGCAACGGCCAGAGAAGAGGTGAAACTGCATGAACAATTTTGTTATAGTAGTTGTCATATTCGAAGGGAATCTTGAGGGGGTCGTTAAACAGT] [+] EMBL AA750999 [AATCAGCAATTTTCATCTTTTTGGTTGCAGAGAGTGAAGAGGCACTTGTCAAAAGGCTATATCTACCGCAAACAGAAACTACAGTATAGCTTCTTGTCAGAGTTGCAACGGCCAGAGAAGAGGTGAAACTGCATGAACAATTTTGTTATAGTAGTTGTCATATTCGAAGGGAATCTTGAGGGGGTCGTTAAACAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_464#0 ACTCCAATCCCCACATCGGCAGCACATCCCCCTTCGCTCCCCTCCTCGTCGCCCTCCTCT 60 consensus_464#1 ------------------------------------------------------------ consensus_464#0 GCCCTCCCCTCCCCTCCTTCCGGAACCTTCTAGATGCTTCTCACGCGAAGGTTCTCCTCC 120 consensus_464#1 ------------------------------------------------------------ consensus_464#0 GCCCTCGCGCGCTCCCCCCTTCTCCCCAGGTCCCTCCCTCCTCCGCGGGCCGTGCCCGCC 180 consensus_464#1 ------------------------------------------------------------ consensus_464#0 ACCCCTCCGGCGCCCCGCCCGCCGCCGCGCCGCCTCATGTCCTCCTCCTCCTCCGGCTGG 240 consensus_464#1 ------------------------------------------------------------ consensus_464#0 CACCACTCCTCTCGCCCGCCCCCGCCGCCCCCCTCCGGCGCCGACAAGGATCAGCTGTTC 300 consensus_464#1 ------------------------------------------------------------ consensus_464#0 CGGGGGCTGGAGGCGGCGCTCGGCACGACGTTCAGCTCGGAGCCGCTCGCGCCGCCGCCG 360 consensus_464#1 ------------------------------------------------------------ consensus_464#0 CAGCCGATGATCCTCGTCATCAGCGGGCCCAGCGGCGTCGGCAAGGACGCTGTCATCCAG 420 consensus_464#1 ------------------------------------------------------------ consensus_464#0 AGGCTGCAAGAAGAGAGGGAGGGGATGCATTTCGTTGTCACCGCGACAAGCAGAGCGAAG 480 consensus_464#1 ------------------------------------------------------------ consensus_464#0 CGGCCCGGTGAAGTTGATGGGAAGGACTATTACTTCGTCACCAAGGAGGAGTTCCTCACG 540 consensus_464#1 ------------------------------------------------------------ consensus_464#0 ATGATTGAAAGGAAGGAGTTGCTCGAGTACGCACTTGTCTATGGGGAGTATAAGGGGATC 600 consensus_464#1 ------------------------------------------------------------ consensus_464#0 CCCAAGCAGCAGATCCGTGATTACATGGCGAAAGGTTATGATATTGTCTTGAGAGTGGAC 660 consensus_464#1 ------------------------------------------------------------ consensus_464#0 ATTCAAGGAGCAGCAACCTTGAGAGAGATTCTTGGCGAATCAGCAATCTTCATCTTTTTG 720 consensus_464#1 -------------------------------------AATCAGCAATTTTCATCTTTTTG 23 ********** ************ consensus_464#0 GTTGCAGAGAGTGAAGAGGCACTTGTCAAAAGGCTA-ATTCACCGCAAAACAGAAACATC 779 consensus_464#1 GTTGCAGAGAGTGAAGAGGCACTTGTCAAAAGGCTATATCTACCGCAAA-CAGAAACTAC 82 ************************************ ** ******** ******* * consensus_464#0 AGATATGCTTCTTGTCAGAGTTGCAACGGCCAGAGAAGAGGTGAAAC-GCATGAACAATT 838 consensus_464#1 AGTATAGCTTCTTGTCAGAGTTGCAACGGCCAGAGAAGAGGTGAAACTGCATGAACAATT 142 ** ***************************************** ************ consensus_464#0 TTGATTATGTAGTTGTCAATTCTGAAGGGAATCTTGAGGGGGCTGTTAAACAGGTGGAGT 898 consensus_464#1 TTGTTATAGTAGTTGTCATATTCGAAGGGAATCTTGAGGGGGTCGTTAAACAGT------ 196 *** * ********** * ******************* ********* consensus_464#0 CTATCATTGATGCTGAGAAGGCTAAGGTCCACAAACGTACGGTTAATATCTAGTCAATGC 958 consensus_464#1 ------------------------------------------------------------ consensus_464#0 TCATAAGTCACATGCTCTTTTAACGGTTTGGAGGAAAATTACCTGGTATTTTTAATCAAT 1018 consensus_464#1 ------------------------------------------------------------ consensus_464#0 TCAAGTTTGAACTATTGTGGAGGAAATCGCCAATGACAATCTGACCTGACTCTTACAAAA 1078 consensus_464#1 ------------------------------------------------------------ consensus_464#0 AAGGCCAATTTGACTTACATTAAATTTGTAGCTGTAAGTCAGAAAGTGAAGTGCATGGCA 1138 consensus_464#1 ------------------------------------------------------------ consensus_464#0 AGTCATTGGAGTTAAATACTGAATATCCTGATTCAAGTGGCTTATAACAGCAATGTACTT 1198 consensus_464#1 ------------------------------------------------------------ consensus_464#0 GTGCAACTCTTTCTGGGTAGAAGTAGGTACTTTTTATTATTTATATATTATCTGTATTTT 1258 consensus_464#1 ------------------------------------------------------------ consensus_464#0 ATTTGTTTGTTCGAATATTACAAACTACTAATAACTGCTTGGGATGAATCCTTATGCTAC 1318 consensus_464#1 ------------------------------------------------------------ consensus_464#0 GGATAT 1324 consensus_464#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||