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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4641#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1225 fasta sequence
[GGAGTAGGAGGGTTCGGGAAGGTGTACAAAGGAGTGCTTCCATCATCCAAATTGGAGGTTGGTGTCAAGGTGATGTCCCATGATTCAAAACAAGGGATGAAGGAGTTCGTCGCGGAGGTTGTAAGCATGGGCCGACTTCGACATCGGAACCTAGTACAGTTACTTGGATATTGCCGTCGCAAGGGTGAACTTCTACTGGTGTACGAGTACATGCCAAATGGCAGTCTTGATAAGTACTTGTATGACCAGGATAAACCCTCGCCGAATTGGATTCAAAGGTTTGAGATCATCAAGGGTGTTGCATCAGGTCTTCTCTACCTACACGAAGAATGGGAGCAGGTCGTCATCCACCGTGACGTCAAGGCAAGCAACGTCCTCCTCGACAGCGAGATGAATGGTCGACTAGGCGATTTTGGCCTAGCACGATTACACGACCATGGAGTTGATGCACACACGACATGTGTGGCAGGAANNAGNNNCTACATCTCCCCNNNNCTGGCGAGGCTGGGCNNNNCGACCAAGGCAACCGACGTGTTCGCGTTCGGTGCATTCATCCTCGAGGTCGCCTGTGGCCGTCGCCCGATAGGCATGAACTCATCAGGAGAATTGCAAGTGTTGGTGGACTTCGTGCTCAGATTCTGGCAGCGAGATCTGATCCTGTGCATGTTGGATACCAGGTTGGGAGGAGAGTTTGTGACGGAGGAGGCAGAGCTAGTGCTCAAGCTTGGGCTTCTCTGCTCGCACCCGTCGCCAGCTTCAAGGCCAAGCATGAGGCTTGTGATGCAATATTTGTGCGGCGATGTGCTGTTACCGGCGATGCCGGAGAGTTACCGGAGCATCCGGAGTTTCAGTGAGATGCAGGTTGAAGGTGATCAGCTTGATGAGAATCCCTTATTAAGACAGTATCTGTCGGTGCAAACGAGTATAACCGGTCTCTCTGGTGGGAGATGATACTGTCAAGTGTCAACAACTAGAGTTTAATTAGCCGATACCAAGGAGAAGAGAAATCTTGATATGGATTAAATTAAGAAGAGATTTAGGTAATTTGAGCCAGAGCAGACCCGAACAGAGGTTTTTAGTTCAGTGAACACACGGGAAGATCGGCCTCGATATATATATTTTGTGATTTTATTATTTTGCGGTTTCATTTAGACTTAAAGATACGCTTTATTTGTGCGTGTAACTACTTTTATACCGAGCAGGACACAATATGCTAGCCAGTCCG]
[+] EMBL CF196689 [GGAGTAGGAGGGTTCGGGAAGGTGTACAAAGGAGTGCTTCCATCATCCAAATTGGAGGTTGGTGTCAAGGTGATGTCCCATGATTCAAAACAAGGGATGAAGGAGTTCGTCGCGGAGGTTGTAAGCATGGGCCGACTTCGACATCGGAACCTAGTACAGTTACTTGGATATTGCCGTCGCAAGGGTGAACTTCTACTGGTGTACGAGTACATGCCAAATGGCAGTCTTGATAAGTACTTGTATGACCAGGATAAACCCTCGCCGAATTGGATTCAAAGGTTTGAGATCATCAAGGGTGTTGCATCAGGTCTTCTCTACCTACACGAAGAATGGGAGCAGGTCGTCATCCACCGTGACGTCAAGGCAAGCAACGTCCTCCTCGACAGCGAGATGAATGGTCGACTAGGCGATTTTGGCCTAGCACGATTACACGACCATGGAGTTGATGCACACACGACATGTGTGGCAGGAANNAGNNNCTACATCTCCCCNNNNCTGGCGAGGCTGGGCNNNNCGACC ]
[+] EMBL AK060877 [ GCCGTCGCAAGGGTGAACTTCTACTAGTATATGAGTACATGCCAAATGGCAGTCTTGATAAGTACCTGTATGACCAGGATAAACCCTCGCCGAATTGGATTCAAAGGTTTGAGATCATCAAGGGTGTTGCATCAGGTCTTCTCTACCTACACGAAGAATGGGAGCAGGTCGTCATCCACCGTGATATCAAGGCAAGCAACGTCCTCCTCGACAGTGAGATGAATGGTCGACTAGGCGATTTTGGCCTAGCACGATTACACGACCATGGAGTTGATGCACACACGACATGTGTGGCAGGGACCAGAGGCTACATCTCCCCTGAACTAGCGAGGCTGGGCAAGGCGACCAAGGCAACCGACGTGTTCGCGTTCGGTGCATTCATCCTCGAGGTCGCCTGTGGCCGTCGCCCGATAGGCATGAACTCATCAGGAGAATTGCAAGTGTTGGTGGACTTCGTGCTCAGATTCTGGCAGCGAGATCTGATCCTGTGCATGTTGGATACCAGGTTGGGAGGAGAGTTTGTGACGGAGGAGGCAGAGCTAGTGCTCAAGCTTGGGCTTCTCTGCTCGCACCCGTCGCCAGCTTCAAGGCCAAGCATGAGGCTTGTGATGCAATATTTGTGCGGCGATGTGCTGTTACCGGCGATGCCGGAGAGTTACCGGAGCATCCGGAGTTTCAGTGAGATGCAGGTTGAAGGTGATCAGCTTGATGAGAATCCCTTATTAAGACAGTATCTGTCGGTGCAAACGAGTATAACCGGTCTCTCTGGTGGGAGATGATACTGTCAAGTGTCAACAACTAGAGTTTAATTAGCCGATACCAAGGAGAAGAGAAATCTTGATATGGATTAAATTAAGAAGAGATTTAGGTAATTTGAGCCAGAGCAGACCCGAACAGAGGTTTTTAGTTCAGTGAACACACGGGAAGATCGGCCTCGATATATATATTTTGTGATTTTATTATTTTGCGGTTTCATTTAGACTTAAAGATACGCTTTATTTGTGCGTGTAACTACTTTTATACCGAGCAGGACACAATATGCTAGCCAGTCCG]
consensusID : consensus_4641#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence
[AAGGTGATGTCCCATGATTNNNNCAAGGGATGAAGGAGTTCGTCGCGGAGGTTGTAAGCATGGGCCGACTTCGACATCGGAACCTAGTACAGTTACTTGGATATTGCCGTCGCAAGGGTGAACTTCTACTGGTGTACGAGTACATGCCAAATGGCAGTCTTGATAAGTACTTGTATGACCAGGATAAACCCTCGCCGAATTGGATTNNNNGGTTTGAGATCATCAAGGGTGTTGCATCNNNTCTTCTCTACCTACACGAAGAATGGGAGCAGGTCGTCATCCACCGTGACGTNNNGGCAAGCAACGTCCTCCTCGACAGNNNNNTGAATGGTCNNCTACGCGATTTTGGCCTNNNNNNNTNNNANGNCNATGGAGTTGATGCANNNNNN]
[+] EMBL CF196495 [AAGGTGATGTCCCATGATTNNNNCAAGGGATGAAGGAGTTCGTCGCGGAGGTTGTAAGCATGGGCCGACTTCGACATCGGAACCTAGTACAGTTACTTGGATATTGCCGTCGCAAGGGTGAACTTCTACTGGTGTACGAGTACATGCCAAATGGCAGTCTTGATAAGTACTTGTATGACCAGGATAAACCCTCGCCGAATTGGATTNNNNGGTTTGAGATCATCAAGGGTGTTGCATCNNNTCTTCTCTACCTACACGAAGAATGGGAGCAGGTCGTCATCCACCGTGACGTNNNGGCAAGCAACGTCCTCCTCGACAGNNNNNTGAATGGTCNNCTACGCGATTTTGGCCTNNNNNNNTNNNANGNCNATGGAGTTGATGCANNNNNN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4641#0 GGAGTAGGAGGGTTCGGGAAGGTGTACAAAGGAGTGCTTCCATCATCCAAATTGGAGGTT 60
consensus_4641#1 ------------------------------------------------------------
consensus_4641#0 GGTGTCAAGGTGATGTCCCATGATTCAAAACAAGGGATGAAGGAGTTCGTCGCGGAGGTT 120
consensus_4641#1 ------AAGGTGATGTCCCATGATTNNNN-CAAGGGATGAAGGAGTTCGTCGCGGAGGTT 53
******************* ******************************
consensus_4641#0 GTAAGCATGGGCCGACTTCGACATCGGAACCTAGTACAGTTACTTGGATATTGCCGTCGC 180
consensus_4641#1 GTAAGCATGGGCCGACTTCGACATCGGAACCTAGTACAGTTACTTGGATATTGCCGTCGC 113
************************************************************
consensus_4641#0 AAGGGTGAACTTCTACTGGTGTACGAGTACATGCCAAATGGCAGTCTTGATAAGTACTTG 240
consensus_4641#1 AAGGGTGAACTTCTACTGGTGTACGAGTACATGCCAAATGGCAGTCTTGATAAGTACTTG 173
************************************************************
consensus_4641#0 TATGACCAGGATAAACCCTCGCCGAATTGGATTCAAAGGTTTGAGATCATCAAGGGTGTT 300
consensus_4641#1 TATGACCAGGATAAACCCTCGCCGAATTGGATTNNNNGGTTTGAGATCATCAAGGGTGTT 233
********************************* ***********************
consensus_4641#0 GCATCAGGTCTTCTCTACCTACACGAAGAATGGGAGCAGGTCGTCATCCACCGTGACGTC 360
consensus_4641#1 GCATCNNNTCTTCTCTACCTACACGAAGAATGGGAGCAGGTCGTCATCCACCGTGACGTN 293
***** ***************************************************
consensus_4641#0 AAGGCAAGCAACGTCCTCCTCGACAGCGAGATGAATGGTCGACTAGGCGATTTTGGCCTA 420
consensus_4641#1 NNGGCAAGCAACGTCCTCCTCGACAGNNNNNTGAATGGTCNNCTACGCGATTTTGGCCTN 353
************************ ********* *** *************
consensus_4641#0 GCACGATTACACGACCATGGAGTTGATGCACACACGACATGTGTGGCAGGAANNAGNNNC 480
consensus_4641#1 NNNNNNTNNNANGNCNATGGAGTTGATGCANNNNNN------------------------ 389
* * * * **************
consensus_4641#0 TACATCTCCCCNNNNCTGGCGAGGCTGGGCNNNNCGACCAAGGCAACCGACGTGTTCGCG 540
consensus_4641#1 ------------------------------------------------------------
consensus_4641#0 TTCGGTGCATTCATCCTCGAGGTCGCCTGTGGCCGTCGCCCGATAGGCATGAACTCATCA 600
consensus_4641#1 ------------------------------------------------------------
consensus_4641#0 GGAGAATTGCAAGTGTTGGTGGACTTCGTGCTCAGATTCTGGCAGCGAGATCTGATCCTG 660
consensus_4641#1 ------------------------------------------------------------
consensus_4641#0 TGCATGTTGGATACCAGGTTGGGAGGAGAGTTTGTGACGGAGGAGGCAGAGCTAGTGCTC 720
consensus_4641#1 ------------------------------------------------------------
consensus_4641#0 AAGCTTGGGCTTCTCTGCTCGCACCCGTCGCCAGCTTCAAGGCCAAGCATGAGGCTTGTG 780
consensus_4641#1 ------------------------------------------------------------
consensus_4641#0 ATGCAATATTTGTGCGGCGATGTGCTGTTACCGGCGATGCCGGAGAGTTACCGGAGCATC 840
consensus_4641#1 ------------------------------------------------------------
consensus_4641#0 CGGAGTTTCAGTGAGATGCAGGTTGAAGGTGATCAGCTTGATGAGAATCCCTTATTAAGA 900
consensus_4641#1 ------------------------------------------------------------
consensus_4641#0 CAGTATCTGTCGGTGCAAACGAGTATAACCGGTCTCTCTGGTGGGAGATGATACTGTCAA 960
consensus_4641#1 ------------------------------------------------------------
consensus_4641#0 GTGTCAACAACTAGAGTTTAATTAGCCGATACCAAGGAGAAGAGAAATCTTGATATGGAT 1020
consensus_4641#1 ------------------------------------------------------------
consensus_4641#0 TAAATTAAGAAGAGATTTAGGTAATTTGAGCCAGAGCAGACCCGAACAGAGGTTTTTAGT 1080
consensus_4641#1 ------------------------------------------------------------
consensus_4641#0 TCAGTGAACACACGGGAAGATCGGCCTCGATATATATATTTTGTGATTTTATTATTTTGC 1140
consensus_4641#1 ------------------------------------------------------------
consensus_4641#0 GGTTTCATTTAGACTTAAAGATACGCTTTATTTGTGCGTGTAACTACTTTTATACCGAGC 1200
consensus_4641#1 ------------------------------------------------------------
consensus_4641#0 AGGACACAATATGCTAGCCAGTCCG 1225
consensus_4641#1 -------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||