These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4641#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1225 fasta sequence [GGAGTAGGAGGGTTCGGGAAGGTGTACAAAGGAGTGCTTCCATCATCCAAATTGGAGGTTGGTGTCAAGGTGATGTCCCATGATTCAAAACAAGGGATGAAGGAGTTCGTCGCGGAGGTTGTAAGCATGGGCCGACTTCGACATCGGAACCTAGTACAGTTACTTGGATATTGCCGTCGCAAGGGTGAACTTCTACTGGTGTACGAGTACATGCCAAATGGCAGTCTTGATAAGTACTTGTATGACCAGGATAAACCCTCGCCGAATTGGATTCAAAGGTTTGAGATCATCAAGGGTGTTGCATCAGGTCTTCTCTACCTACACGAAGAATGGGAGCAGGTCGTCATCCACCGTGACGTCAAGGCAAGCAACGTCCTCCTCGACAGCGAGATGAATGGTCGACTAGGCGATTTTGGCCTAGCACGATTACACGACCATGGAGTTGATGCACACACGACATGTGTGGCAGGAANNAGNNNCTACATCTCCCCNNNNCTGGCGAGGCTGGGCNNNNCGACCAAGGCAACCGACGTGTTCGCGTTCGGTGCATTCATCCTCGAGGTCGCCTGTGGCCGTCGCCCGATAGGCATGAACTCATCAGGAGAATTGCAAGTGTTGGTGGACTTCGTGCTCAGATTCTGGCAGCGAGATCTGATCCTGTGCATGTTGGATACCAGGTTGGGAGGAGAGTTTGTGACGGAGGAGGCAGAGCTAGTGCTCAAGCTTGGGCTTCTCTGCTCGCACCCGTCGCCAGCTTCAAGGCCAAGCATGAGGCTTGTGATGCAATATTTGTGCGGCGATGTGCTGTTACCGGCGATGCCGGAGAGTTACCGGAGCATCCGGAGTTTCAGTGAGATGCAGGTTGAAGGTGATCAGCTTGATGAGAATCCCTTATTAAGACAGTATCTGTCGGTGCAAACGAGTATAACCGGTCTCTCTGGTGGGAGATGATACTGTCAAGTGTCAACAACTAGAGTTTAATTAGCCGATACCAAGGAGAAGAGAAATCTTGATATGGATTAAATTAAGAAGAGATTTAGGTAATTTGAGCCAGAGCAGACCCGAACAGAGGTTTTTAGTTCAGTGAACACACGGGAAGATCGGCCTCGATATATATATTTTGTGATTTTATTATTTTGCGGTTTCATTTAGACTTAAAGATACGCTTTATTTGTGCGTGTAACTACTTTTATACCGAGCAGGACACAATATGCTAGCCAGTCCG] [+] EMBL CF196689 [GGAGTAGGAGGGTTCGGGAAGGTGTACAAAGGAGTGCTTCCATCATCCAAATTGGAGGTTGGTGTCAAGGTGATGTCCCATGATTCAAAACAAGGGATGAAGGAGTTCGTCGCGGAGGTTGTAAGCATGGGCCGACTTCGACATCGGAACCTAGTACAGTTACTTGGATATTGCCGTCGCAAGGGTGAACTTCTACTGGTGTACGAGTACATGCCAAATGGCAGTCTTGATAAGTACTTGTATGACCAGGATAAACCCTCGCCGAATTGGATTCAAAGGTTTGAGATCATCAAGGGTGTTGCATCAGGTCTTCTCTACCTACACGAAGAATGGGAGCAGGTCGTCATCCACCGTGACGTCAAGGCAAGCAACGTCCTCCTCGACAGCGAGATGAATGGTCGACTAGGCGATTTTGGCCTAGCACGATTACACGACCATGGAGTTGATGCACACACGACATGTGTGGCAGGAANNAGNNNCTACATCTCCCCNNNNCTGGCGAGGCTGGGCNNNNCGACC ] [+] EMBL AK060877 [ GCCGTCGCAAGGGTGAACTTCTACTAGTATATGAGTACATGCCAAATGGCAGTCTTGATAAGTACCTGTATGACCAGGATAAACCCTCGCCGAATTGGATTCAAAGGTTTGAGATCATCAAGGGTGTTGCATCAGGTCTTCTCTACCTACACGAAGAATGGGAGCAGGTCGTCATCCACCGTGATATCAAGGCAAGCAACGTCCTCCTCGACAGTGAGATGAATGGTCGACTAGGCGATTTTGGCCTAGCACGATTACACGACCATGGAGTTGATGCACACACGACATGTGTGGCAGGGACCAGAGGCTACATCTCCCCTGAACTAGCGAGGCTGGGCAAGGCGACCAAGGCAACCGACGTGTTCGCGTTCGGTGCATTCATCCTCGAGGTCGCCTGTGGCCGTCGCCCGATAGGCATGAACTCATCAGGAGAATTGCAAGTGTTGGTGGACTTCGTGCTCAGATTCTGGCAGCGAGATCTGATCCTGTGCATGTTGGATACCAGGTTGGGAGGAGAGTTTGTGACGGAGGAGGCAGAGCTAGTGCTCAAGCTTGGGCTTCTCTGCTCGCACCCGTCGCCAGCTTCAAGGCCAAGCATGAGGCTTGTGATGCAATATTTGTGCGGCGATGTGCTGTTACCGGCGATGCCGGAGAGTTACCGGAGCATCCGGAGTTTCAGTGAGATGCAGGTTGAAGGTGATCAGCTTGATGAGAATCCCTTATTAAGACAGTATCTGTCGGTGCAAACGAGTATAACCGGTCTCTCTGGTGGGAGATGATACTGTCAAGTGTCAACAACTAGAGTTTAATTAGCCGATACCAAGGAGAAGAGAAATCTTGATATGGATTAAATTAAGAAGAGATTTAGGTAATTTGAGCCAGAGCAGACCCGAACAGAGGTTTTTAGTTCAGTGAACACACGGGAAGATCGGCCTCGATATATATATTTTGTGATTTTATTATTTTGCGGTTTCATTTAGACTTAAAGATACGCTTTATTTGTGCGTGTAACTACTTTTATACCGAGCAGGACACAATATGCTAGCCAGTCCG] consensusID : consensus_4641#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence [AAGGTGATGTCCCATGATTNNNNCAAGGGATGAAGGAGTTCGTCGCGGAGGTTGTAAGCATGGGCCGACTTCGACATCGGAACCTAGTACAGTTACTTGGATATTGCCGTCGCAAGGGTGAACTTCTACTGGTGTACGAGTACATGCCAAATGGCAGTCTTGATAAGTACTTGTATGACCAGGATAAACCCTCGCCGAATTGGATTNNNNGGTTTGAGATCATCAAGGGTGTTGCATCNNNTCTTCTCTACCTACACGAAGAATGGGAGCAGGTCGTCATCCACCGTGACGTNNNGGCAAGCAACGTCCTCCTCGACAGNNNNNTGAATGGTCNNCTACGCGATTTTGGCCTNNNNNNNTNNNANGNCNATGGAGTTGATGCANNNNNN] [+] EMBL CF196495 [AAGGTGATGTCCCATGATTNNNNCAAGGGATGAAGGAGTTCGTCGCGGAGGTTGTAAGCATGGGCCGACTTCGACATCGGAACCTAGTACAGTTACTTGGATATTGCCGTCGCAAGGGTGAACTTCTACTGGTGTACGAGTACATGCCAAATGGCAGTCTTGATAAGTACTTGTATGACCAGGATAAACCCTCGCCGAATTGGATTNNNNGGTTTGAGATCATCAAGGGTGTTGCATCNNNTCTTCTCTACCTACACGAAGAATGGGAGCAGGTCGTCATCCACCGTGACGTNNNGGCAAGCAACGTCCTCCTCGACAGNNNNNTGAATGGTCNNCTACGCGATTTTGGCCTNNNNNNNTNNNANGNCNATGGAGTTGATGCANNNNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4641#0 GGAGTAGGAGGGTTCGGGAAGGTGTACAAAGGAGTGCTTCCATCATCCAAATTGGAGGTT 60 consensus_4641#1 ------------------------------------------------------------ consensus_4641#0 GGTGTCAAGGTGATGTCCCATGATTCAAAACAAGGGATGAAGGAGTTCGTCGCGGAGGTT 120 consensus_4641#1 ------AAGGTGATGTCCCATGATTNNNN-CAAGGGATGAAGGAGTTCGTCGCGGAGGTT 53 ******************* ****************************** consensus_4641#0 GTAAGCATGGGCCGACTTCGACATCGGAACCTAGTACAGTTACTTGGATATTGCCGTCGC 180 consensus_4641#1 GTAAGCATGGGCCGACTTCGACATCGGAACCTAGTACAGTTACTTGGATATTGCCGTCGC 113 ************************************************************ consensus_4641#0 AAGGGTGAACTTCTACTGGTGTACGAGTACATGCCAAATGGCAGTCTTGATAAGTACTTG 240 consensus_4641#1 AAGGGTGAACTTCTACTGGTGTACGAGTACATGCCAAATGGCAGTCTTGATAAGTACTTG 173 ************************************************************ consensus_4641#0 TATGACCAGGATAAACCCTCGCCGAATTGGATTCAAAGGTTTGAGATCATCAAGGGTGTT 300 consensus_4641#1 TATGACCAGGATAAACCCTCGCCGAATTGGATTNNNNGGTTTGAGATCATCAAGGGTGTT 233 ********************************* *********************** consensus_4641#0 GCATCAGGTCTTCTCTACCTACACGAAGAATGGGAGCAGGTCGTCATCCACCGTGACGTC 360 consensus_4641#1 GCATCNNNTCTTCTCTACCTACACGAAGAATGGGAGCAGGTCGTCATCCACCGTGACGTN 293 ***** *************************************************** consensus_4641#0 AAGGCAAGCAACGTCCTCCTCGACAGCGAGATGAATGGTCGACTAGGCGATTTTGGCCTA 420 consensus_4641#1 NNGGCAAGCAACGTCCTCCTCGACAGNNNNNTGAATGGTCNNCTACGCGATTTTGGCCTN 353 ************************ ********* *** ************* consensus_4641#0 GCACGATTACACGACCATGGAGTTGATGCACACACGACATGTGTGGCAGGAANNAGNNNC 480 consensus_4641#1 NNNNNNTNNNANGNCNATGGAGTTGATGCANNNNNN------------------------ 389 * * * * ************** consensus_4641#0 TACATCTCCCCNNNNCTGGCGAGGCTGGGCNNNNCGACCAAGGCAACCGACGTGTTCGCG 540 consensus_4641#1 ------------------------------------------------------------ consensus_4641#0 TTCGGTGCATTCATCCTCGAGGTCGCCTGTGGCCGTCGCCCGATAGGCATGAACTCATCA 600 consensus_4641#1 ------------------------------------------------------------ consensus_4641#0 GGAGAATTGCAAGTGTTGGTGGACTTCGTGCTCAGATTCTGGCAGCGAGATCTGATCCTG 660 consensus_4641#1 ------------------------------------------------------------ consensus_4641#0 TGCATGTTGGATACCAGGTTGGGAGGAGAGTTTGTGACGGAGGAGGCAGAGCTAGTGCTC 720 consensus_4641#1 ------------------------------------------------------------ consensus_4641#0 AAGCTTGGGCTTCTCTGCTCGCACCCGTCGCCAGCTTCAAGGCCAAGCATGAGGCTTGTG 780 consensus_4641#1 ------------------------------------------------------------ consensus_4641#0 ATGCAATATTTGTGCGGCGATGTGCTGTTACCGGCGATGCCGGAGAGTTACCGGAGCATC 840 consensus_4641#1 ------------------------------------------------------------ consensus_4641#0 CGGAGTTTCAGTGAGATGCAGGTTGAAGGTGATCAGCTTGATGAGAATCCCTTATTAAGA 900 consensus_4641#1 ------------------------------------------------------------ consensus_4641#0 CAGTATCTGTCGGTGCAAACGAGTATAACCGGTCTCTCTGGTGGGAGATGATACTGTCAA 960 consensus_4641#1 ------------------------------------------------------------ consensus_4641#0 GTGTCAACAACTAGAGTTTAATTAGCCGATACCAAGGAGAAGAGAAATCTTGATATGGAT 1020 consensus_4641#1 ------------------------------------------------------------ consensus_4641#0 TAAATTAAGAAGAGATTTAGGTAATTTGAGCCAGAGCAGACCCGAACAGAGGTTTTTAGT 1080 consensus_4641#1 ------------------------------------------------------------ consensus_4641#0 TCAGTGAACACACGGGAAGATCGGCCTCGATATATATATTTTGTGATTTTATTATTTTGC 1140 consensus_4641#1 ------------------------------------------------------------ consensus_4641#0 GGTTTCATTTAGACTTAAAGATACGCTTTATTTGTGCGTGTAACTACTTTTATACCGAGC 1200 consensus_4641#1 ------------------------------------------------------------ consensus_4641#0 AGGACACAATATGCTAGCCAGTCCG 1225 consensus_4641#1 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||