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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4642#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1827 fasta sequence
[GCCTCCGCACTGCATTCCTTCCAGTTCGTTTCGTTGCCGTTCGCTCAGCGCTCGCTTCCACGGTTCCCCCACCCACCACGCGCATTCGCATTCGCATTCGCAGCAGCTGAGACTTGGGATATGGTTATGAATTCCAAGACCCTTGTTGCTCTCGATTCCCCCCCTTTCTTTCCTCACTCTCCCTGAGCTGGTGGGTGGCGGCGGCGGCGGCGGCCATGAGCTGGAGGAGAGGGGACGGGGGCGTGGCGAGGAGATGGGTCCTGCTGCTCTGCACCGGGAGCTTCTTCCTCGGCCTGCTCTTCACCGACAGGATGTGGACACTGCCTGAGGTTACTGAAGTTGCCAGGCCAAATGGAAGGAGAGAGAAGGAGGATGAGCTTACTGCTGGAGACTGTAATTCTGCTAAGGTTAATGTAAAACGAGATTACAGGGAGATCCTACAAACCCAAGATACCCATCATGCTGTATGGACTTTGGATAAGACAATAGCAAAACTGGAGACAGAACTTTCCGCTGCGAGAACTCTGCAGGAATCATTTCTCAATGGTTCTCCGGTTTCAGAAGGGCATAAGGGTTCGGACTCTACAGGAAGGCAGAAATATCTTATGGTGATAGGCATTAATACTGCTTTTAGCAGTCGACAGAGAAGGGATTCTATCCGTAACACATGGATGCCTCAAGGAATAAAGAGAAGAAAACTAGAAGAAGAGAAGGGGATCGTAATCCGTTTTGTTATTGGTCACAGTGCTATTTCAGGTGGCATTGTGGAGAGAGCAATCAAGGCAGAGGAAAGAAAACATGGAGATTTCATGAGAATAGACCATGTTGAAGGATACCTTGAATTGTCTGGCAAAACCAAGACATACTTTGCTACAGCTGTTTCTTTATGGGATGCTGACTTCTATGTGAAGGTTGACGATGATGTGCATGTTAATATAGCAACACTCGGACAGATTTTATCGAATCATGTTAAGAAGCCCAGAGTATATATTGGATGCATGAAGTCCGGTCCCGTCTTATCTGACAAAGATGTGAGGTACTATGAACCTGAGCATTGGAAATTTGGTGACCAGTATTTCCGGCATGCAACTGGTCAATTGTATGCTATTTCAAAAGATTTGGCAACTTACATATCAATAAACAAACGTGTTTTGCATAAGTACATCAATGAGGATGTGTCTTTGGGAGCCTGGTTCATAGGATTAGATGTTGAGCATATTGATGAGCGCCGACTTTGTTGTGGTACTCCACCTGATTGCGAATGGAAAGCTCAGGCAGGGAATACATGCGCAGTGTCATTTGATTGGAAATGCAGTGGCATATGTGACTCTGTGGAGAACATGCAGTGGGTGCACAATAGATGTGGAGAAAGCGAGAAATCTCTCTGGATTTCTTCTTTCTAAGCAGGGCCACCGGAAGATCTGACATGACTAGCTGAATGCTACATTGTATAACAGATCAGAACATGTTGTACATTGTGCAGAAAATGTATTAGATTCATCTTGTAGCAATAGTAGCTAAGCTAGGCTCAATTTTGTGATTGGGGCTCACCATACACCGATACACCAACTATGCAGACCGTGGTTTCACTGAGACTGCCGGTGACGGTTGAGGGTACATAGGCTGATCTACTTTTTCTCATGTTTTAGGTTGCCATTTTTGTTGTAACTTGTAAGGATCTAATGTATTCTGTGCATTGTTACCAAGATATATACATATATGCAGAGCCTTTTCACTCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGTTACTTACCGTAT]
[+] EMBL AK063283 [GCCTCCGCACTGCATTCCTTCCAGTTCGTTTCGTTGCCGTTCGCTCAGCGCTCGCTTCCACGGTTCCCCCACCCACCACGCGCATTCGCATTCGCATTCGCAGCAGCTGAGACTTGGGATATGGTTATGAATTCCAAGACCCTTGTTGCTCTCGATTCCCCCCCTTTCTTTCCTCACTCTCCCTGAGCTGGTGGGTGGCGGCGGCGGCGGCGGCCATGAGCTGGAGGAGAGGGGACGGGGGCGTGGCGAGGAGATGGGTCCTGCTGCTCTGCACCGGGAGCTTCTTCCTCGGCCTGCTCTTCACCGACAGGATGTGGACACTGCCTGAGGTTACTGAAGTTGCCAGGCCAAATGGAAGGAGAGAGAAGGAGGATGAGCTTACTGCTGGAGACTGTAATTCTGCTAAGGTTAATGTAAAACGAGATTACAGGGAGATCCTACAAACCCAAGATACCCATCATGCTGTATGGACTTTGGATAAGACAATAGCAAAACTGGAGACAGAACTTTCCGCTGCGAGAACTCTGCAGGAATCATTTCTCAATGGTTCTCCGGTTTCAGAAGGGCATAAGGGTTCGGACTCTACAGGAAGGCAGAAATATCTTATGGTGATAGGCATTAATACTGCTTTTAGCAGTCGACAGAGAAGGGATTCTATCCGTAACACATGGATGCCTCAAGGAATAAAGAGAAGAAAACTAGAAGAAGAGAAGGGGATCGTAATCCGTTTTGTTATTGGTCACAGTGCTATTTCAGGTGGCATTGTGGAGAGAGCAATCAAGGCAGAGGAAAGAAAACATGGAGATTTCATGAGAATAGACCATGTTGAAGGATACCTTGAATTGTCTGGCAAAACCAAGACATACTTTGCTACAGCTGTTTCTTTATGGGATGCTGACTTCTATGTGAAGGTTGACGATGATGTGCATGTTAATATAGCAACACTCGGACAGATTTTATCGAATCATGTTAAGAAGCCCAGAGTATATATTGGATGCATGAAGTCCGGTCCCGTCTTATCTGACAAAGATGTGAGGTACTATGAACCTGAGCATTGGAAATTTGGTGACCAGTATTTCCGGCATGCAACTGGTCAATTGTATGCTATTTCAAAAGATTTGGCAACTTACATATCAATAAACAAACGTGTTTTGCATAAGTACATCAATGAGGATGTGTCTTTGGGAGCCTGGTTCATAGGATTAGATGTTGAGCATATTGATGAGCGCCGACTTTGTTGTGGTACTCCACCTGATTGCGAATGGAAAGCTCAGGCAGGGAATACATGCGCAGTGTCATTTGATTGGAAATGCAGTGGCATATGTGACTCTGTGGAGAACATGCAGTGGGTGCACAATAGATGTGGAGAAAGCGAGAAATCTCTCTGGATTTCTTCTTTCTAAGCAGGGCCACCGGAAGATCTGACATGACTAGCTGAATGCTACATTGTATAACAGATCAGAACATGTTGTACATTGTGCAGAAAATGTATTAGATTCATCTTGTAGCAATAGTAGCTAAGCTAGGCTCAATTTTGTGATTGGGGCTCACCATACACCGATACACCAACTATGCAGACCGTGGTTTCACTGAGACTGCCGGTGACGGTTGAGGGTACATAGGCTGATCTACTTTTTCTCATGTTTTAGGTTGCCATTTTTGTTGTAACTTGTAAGGATCTAATGTATTCTGTGCATTGTTACCAAGATATATACATATATGCAGAGCCTT ]
[+] EMBL CF327425 [ CACCGATACACCAACTATGCAGACCGTGGTTTCACTGAGACTGCCGGTGACGGTTAAGGGTACATAGGCTGATCTACTTTTTCTCATGTTTTAGGTTGCCATTTTTGTTGTAACTTGTAAGGATCTAATGTATTCTGTGCATTGTTACCAAGATATATACATATATGCAGAGCCTTTTCACTCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGTTACTTACCGTAT]
consensusID : consensus_4642#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence
[TTCGCAGCAGCTGAGACTTGGGATATGGTTATGAATTCCAAGACCCTTGTTGCTCTCGATTCCCCCCCTTTCTTTCCTCACTCTCCCTGAGCTGGTGGGTGGCGGCGGCGGCGGCGGCCATGAGCTGGAGGAGAGGGGACGGGGGCGTGGCGAGGAGATGGGTCCTGCTGCTCTGCACCGGGAGCTTCTTCCTCGGCCTGCTCTTCACCGACAGGATGTGGACACTGCCTGAGGTTACTGAAGTTGCCAGGCCAAATGGAAGGAGAGAGAAGGAGGATGAGCTTACTGCTGGAGACTGTAATTCTGCTAAGGTGTACCATTCCCCAACCACAAGTAATTCCTGACAGTATTTGCATATGTCACATAGCGAAGAACGAATTGCATATTATCTCTTTAATTAGAATACTCTTTATTTTTTTTTCTTGAAAACGCAAGAGAATTGCATTTCATTTCA]
[+] EMBL AK108015 [TTCGCAGCAGCTGAGACTTGGGATATGGTTATGAATTCCAAGACCCTTGTTGCTCTCGATTCCCCCCCTTTCTTTCCTCACTCTCCCTGAGCTGGTGGGTGGCGGCGGCGGCGGCGGCCATGAGCTGGAGGAGAGGGGACGGGGGCGTGGCGAGGAGATGGGTCCTGCTGCTCTGCACCGGGAGCTTCTTCCTCGGCCTGCTCTTCACCGACAGGATGTGGACACTGCCTGAGGTTACTGAAGTTGCCAGGCCAAATGGAAGGAGAGAGAAGGAGGATGAGCTTACTGCTGGAGACTGTAATTCTGCTAAGGTGTACCATTCCCCAACCACAAGTAATTCCTGACAGTATTTGCATATGTCACATAGCGAAGAACGAATTGCATATTATCTCTTTAATTAGAATACTCTTTATTTTTTTTTCTTGAAAACGCAAGAGAATTGCATTTCATTTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4642#0 GCCTCCGCACTGCATTCCTTCCAGTTCGTTTCGTTGCCGTTCGCTCAGCGCTCGCTTCCA 60
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 CGGTTCCCCCACCCACCACGCGCATTCGCATTCGCATTCGCAGCAGCTGAGACTTGGGAT 120
consensus_4642#1 ------------------------------------TTCGCAGCAGCTGAGACTTGGGAT 24
************************
consensus_4642#0 ATGGTTATGAATTCCAAGACCCTTGTTGCTCTCGATTCCCCCCCTTTCTTTCCTCACTCT 180
consensus_4642#1 ATGGTTATGAATTCCAAGACCCTTGTTGCTCTCGATTCCCCCCCTTTCTTTCCTCACTCT 84
************************************************************
consensus_4642#0 CCCTGAGCTGGTGGGTGGCGGCGGCGGCGGCGGCCATGAGCTGGAGGAGAGGGGACGGGG 240
consensus_4642#1 CCCTGAGCTGGTGGGTGGCGGCGGCGGCGGCGGCCATGAGCTGGAGGAGAGGGGACGGGG 144
************************************************************
consensus_4642#0 GCGTGGCGAGGAGATGGGTCCTGCTGCTCTGCACCGGGAGCTTCTTCCTCGGCCTGCTCT 300
consensus_4642#1 GCGTGGCGAGGAGATGGGTCCTGCTGCTCTGCACCGGGAGCTTCTTCCTCGGCCTGCTCT 204
************************************************************
consensus_4642#0 TCACCGACAGGATGTGGACACTGCCTGAGGTTACTGAAGTTGCCAGGCCAAATGGAAGGA 360
consensus_4642#1 TCACCGACAGGATGTGGACACTGCCTGAGGTTACTGAAGTTGCCAGGCCAAATGGAAGGA 264
************************************************************
consensus_4642#0 GAGAGAAGGAGGATGAGCTTACTGCTGGAGACTGTAATTCTGCTAAGGTTAATGTAAAAC 420
consensus_4642#1 GAGAGAAGGAGGATGAGCTTACTGCTGGAGACTGTAATTCTGCTAAGGTGTACC------ 318
************************************************* *
consensus_4642#0 GAGATTACAGGGAGATCCTACAAACCCAAGATACCCATCATGCTGTATGGACTTTGGATA 480
consensus_4642#1 --------------ATTCCCCAACCACAAGTAATTCCTGACAGTATTTGCATATGTCACA 364
** * *** * **** * * * * * * ** * * * *
consensus_4642#0 AGACAATAGCAAAACTGGAGACAGAACTTTCCGCTGCGAGAACTCTGCAGGAATCATTTC 540
consensus_4642#1 TAGCGAAGAACGAATTGCATATT-ATCTCTTTAATTAGAATACTCT-------TTATTTT 416
* * ** ** * * * ** * * ** ***** * ****
consensus_4642#0 TCAATGGTTCTCCGGTTTCAGAAGGGCATAAGGGTTCGGACTCTACAGGAAGGCAGAAAT 600
consensus_4642#1 TT-----TTTCTTGAAAACGCAAGAGAATTGCATTTC--ATTTCA--------------- 454
* ** * * *** * ** *** * * *
consensus_4642#0 ATCTTATGGTGATAGGCATTAATACTGCTTTTAGCAGTCGACAGAGAAGGGATTCTATCC 660
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 GTAACACATGGATGCCTCAAGGAATAAAGAGAAGAAAACTAGAAGAAGAGAAGGGGATCG 720
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 TAATCCGTTTTGTTATTGGTCACAGTGCTATTTCAGGTGGCATTGTGGAGAGAGCAATCA 780
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 AGGCAGAGGAAAGAAAACATGGAGATTTCATGAGAATAGACCATGTTGAAGGATACCTTG 840
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 AATTGTCTGGCAAAACCAAGACATACTTTGCTACAGCTGTTTCTTTATGGGATGCTGACT 900
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 TCTATGTGAAGGTTGACGATGATGTGCATGTTAATATAGCAACACTCGGACAGATTTTAT 960
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 CGAATCATGTTAAGAAGCCCAGAGTATATATTGGATGCATGAAGTCCGGTCCCGTCTTAT 1020
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 CTGACAAAGATGTGAGGTACTATGAACCTGAGCATTGGAAATTTGGTGACCAGTATTTCC 1080
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 GGCATGCAACTGGTCAATTGTATGCTATTTCAAAAGATTTGGCAACTTACATATCAATAA 1140
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 ACAAACGTGTTTTGCATAAGTACATCAATGAGGATGTGTCTTTGGGAGCCTGGTTCATAG 1200
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 GATTAGATGTTGAGCATATTGATGAGCGCCGACTTTGTTGTGGTACTCCACCTGATTGCG 1260
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 AATGGAAAGCTCAGGCAGGGAATACATGCGCAGTGTCATTTGATTGGAAATGCAGTGGCA 1320
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 TATGTGACTCTGTGGAGAACATGCAGTGGGTGCACAATAGATGTGGAGAAAGCGAGAAAT 1380
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 CTCTCTGGATTTCTTCTTTCTAAGCAGGGCCACCGGAAGATCTGACATGACTAGCTGAAT 1440
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 GCTACATTGTATAACAGATCAGAACATGTTGTACATTGTGCAGAAAATGTATTAGATTCA 1500
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 TCTTGTAGCAATAGTAGCTAAGCTAGGCTCAATTTTGTGATTGGGGCTCACCATACACCG 1560
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 ATACACCAACTATGCAGACCGTGGTTTCACTGAGACTGCCGGTGACGGTTGAGGGTACAT 1620
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 AGGCTGATCTACTTTTTCTCATGTTTTAGGTTGCCATTTTTGTTGTAACTTGTAAGGATC 1680
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 TAATGTATTCTGTGCATTGTTACCAAGATATATACATATATGCAGAGCCTTTTCACTCTT 1740
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1800
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 CCCCTGTCATGCCGTTACTTACCGTAT 1827
consensus_4642#1 ---------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||