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Oryza sativa
cluster # 4646 cluster # 4646       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4646#0 length = 2673 sequences # 3  

consensusID : consensus_4646#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2673
fasta sequence
                              [CCCTTTCCCCGCCGCCCGCGCACCCACGCGTCTCTCTCCCTCTCTCTCCGCCGCCGCCGCCGCCGCAGCCAGCCAGCCATCCAGCCATGTCGGGTTGGGACGAGGGCGCCGTCTTCTACAGCGACCAGGCGCAGTTCCCGCGCGGCGGCCCCGGCGGCGACCCCTCCGCCGACCTCACCCGCCACTCCGCCCTCCGCAAGTTCAAGGAGTTCCTCCGCGGCTTCACCGGCCCAACCGGCGACTTCCCCTACCGCGAGAGCCTGGTGCACAACCGCGACCATGTCACCGTCGCCATCGAGGACCTCGACGCCTTCGACGCCGAGCTGTCCGACAAGATCCGGAAGTCTCCCGCTGATTACCTACCGCTGTTTGAGACGGCTGCGTCCGAGGTCCTCGCGAGCCTTCGGTCCAAGGTCGCTGGAGAGACCGGCGAGATGGAGGAGCCCGCCACCGGCGACGTGCAGATCTTCTTGTCCTCAAAGGAGAACTGCCTGTCCATGAGGTCTATTGGGGCGGATTACATGTCCAAGCTGGTGAAGATTGCCGGGATCACAATCGCCGCGTCGAGGGTGAAAGCTAAGGCCACTCATGTCACGCTGCTCTGCAAGAACTGCAGAAGTGTGAAAACGGTGCCGTGTAGGCCTGGCCTTGGTGGGGCTATTGTCCCACGATCGTGCGACCATGTTCCTCAGCCTGGAGAAGAGCCTTGCCCCTTGGACCCCTGGATTGCAGTTCCAGATAAGAGCAAGTATGTGGATCTCCAGACCCTCAAATTGCAGGAAAATCCTGAGGATGTTCCAACTGGTGAGCTCCCGAGGAATATGCTGCTGTCCGTAGACAGGCATCTTGTTCAGACCATTGTTCCTGGAACTAGATTAACTGTAATTGGTATCTACAGTGTCTACCAAGCATCTGCAAACCAAAAGGGTGCTGTTGGAGTCAAACAGCCTTACATTAGAGTTGTGGGGTTGGAGCAGTCCCGAGATGCCAACTCGAATGGTCCCTCAAATTTTACACTTGATGAGGAAATGGAATTCAAAGAATTTGCACAGAGGCCAGATGCATATGTCAAGATTTGCTCAATGATTGGCCCTTCAATTTATGGCCATTCTGATGTCAAGAAAGCTATTGCATGCTTGCTGTTTGGTGGCTCAAAGAAGAGGCTACCGGATGGTGTCCGTTTGAGAGGGGACATTCATGTCTTGCTGCTGGGTGATCCATCAACAGCAAAATCACAGTTCCTCAAGTTTGTGGAGAAGACAGCGCCGATTGCTGTCTATACATCTGGGAAAGGTTCATCAGCAGCTGGTCTCACAGCGTCAGTAATTCGGGACGGTAGCTCTCGAGAGTTTTATTTGGAAGGAGGGGCCATGGTTTTGGCTGATGGTGGAGTTGTTTGTATTGATGAGTTTGACAAAATGAGGCCTGAGGACCGAGTTGCAATTCACGAAGCAATGGAACAGCAGACCATCTCGATTGCCAAAGCTGGCATTACAACAGTACTCAATTCAAGGACCTCGGTACTAGCAGCTGCCAATCCAATTGCAGGGCGCTACGATGATCTTAAGACTGCACAAGATAACATTGATCTGCAGACAACCATCCTTTCTAGATTTGATCTAATCTTTATTGTTAAAGATGTCAGAATGTATGATCAAGACAAGCGAATTGCAAGCCACATCATTAAGGTGCATGCCAGTGGTGCTGCTGCTTCATCCAAGAATACAGATGCTAGTGAAGGAGAGAATTGGCTAAAAAGGTACATTGAGTATTGCCGTGTTACTTGTAAACCACGACTCTCAGAAAAGGCAGCAGAGATGCTTCAGAACAAATATGTGGAGATTAGACAGAAAATGAGACAACAAGCTCATGAAACAGGGAGGGCTGCAGCTATACCCATCACTGTGCGGCAGCTTGAAGCCATTATACGTTTGAGTGAATCTCTTGCAAAGATGAGATTGACAAGTGTGGCTACACCAGAGCATGTTGAAGAGGCA-TTTAGGCTGTTCAA-TGTCTCCACTGTTGATGCCGCAAGATCTGGAATCAATGAGCATTTGAACCTATCACCAGATATTGCAAATGAGATCAAGCAAGCTGAGGCACAAATAAAGAGAAGGATGGGAATTGGAAGCCACATATCCGAGCGACGCCTGATCGATGAACTAAATAGGATGGGGATGAATGAATCCATTGTGCGAAGAGCCCTTCTGATCATGCACCAAAGGGATGAAGTGGAGTACAAGAGAGAGCGCCATGTCATTGTCCGGAAGGCTTGAGGTGAACTGTGGAGTATTTATAAATCGAGGACAACTTCTATTCAGACTGTATAAGGCTATGAGTTCACTGAAACTGTAATCTCTGGGAGAAGACAAGGACATGTTTGAGTTTCGGTTGATCACTGACATGACCATTGTAATCTGCAAGAGTAGAAGAAATGCACTCCGTCCTTGATGAAACTGTAGTTAAACTACAGTATTAAAGATGTAACTGTAGTGAAACCATG-TAACCAGGG-TTCTGAAATGGCTAAT-GTATTAAACTACAGTATTA-ATTCATGGATATAAATGGCTAATATTCTGCANTGCCCCAGACAAGAATTNAAAGGGAGCAGAATTCAGCTGATTAAAAAAAAAAAAAAAAACAAAAANCGCCCNCCCCCCGCGGTNGAACCTNCAN]

[+] EMBL AK073980             [CCCTTTCCCCGCCGCCCGCGCACCCACGCGTCTCTCTCCCTCTCTCTCCGCCGCCGCCGCCGCCGCAGCCAGCCAGCCATCCAGCCATGTCGGGTTGGGACGAGGGCGCCGTCTTCTACAGCGACCAGGCGCAGTTCCCGCGCGGCGGCCCCGGCGGCGACCCCTCCGCCGACCTCACCCGCCACTCCGCCCTCCGCAAGTTCAAGGAGTTCCTCCGCGGCTTCACCGGCCCAACCGGCGACTTCCCCTACCGCGAGAGCCTGGTGCACAACCGCGACCATGTCACCGTCGCCATCGAGGACCTCGACGCCTTCGACGCCGAGCTGTCCGACAAGATCCGGAAGTCTCCCGCTGATTACCTACCGCTGTTTGAGACGGCTGCGTCCGAGGTCCTCGCGAGCCTTCGGTCCAAGGTCGCTGGAGAGACCGGCGAGATGGAGGAGCCCGCCACCGGCGACGTGCAGATCTTCTTGTCCTCAAAGGAGAACTGCCTGTCCATGAGGTCTATTGGGGCGGATTACATGTCCAAGCTGGTGAAGATTGCCGGGATCACAATCGCCGCGTCGAGGGTGAAAGCTAAGGCCACTCATGTCACGCTGCTCTGCAAGAACTGCAGAAGTGTGAAAACGGTGCCGTGTAGGCCTGGCCTTGGTGGGGCTATTGTCCCACGATCGTGCGACCATGTTCCTCAGCCTGGAGAAGAGCCTTGCCCCTTGGACCCCTGGATTGCAGTTCCAGATAAGAGCAAGTATGTGGATCTCCAGACCCTCAAATTGCAGGAAAATCCTGAGGATGTTCCAACTGGTGAGCTCCCGAGGAATATGCTGCTGTCCGTAGACAGGCATCTTGTTCAGACCATTGTTCCTGGAACTAGATTAACTGTAATTGGTATCTACAGTGTCTACCAAGCATCTGCAAACCAAAAGGGTGCTGTTGGAGTCAAACAGCCTTACATTAGAGTTGTGGGGTTGGAGCAGTCCCGAGATGCCAACTCGAATGGTCCCTCAAATTTTACACTTGATGAGGAAATGGAATTCAAAGAATTTGCACAGAGGCCAGATGCATATGTCAAGATTTGCTCAATGATTGGCCCTTCAATTTATGGCCATTCTGATGTCAAGAAAGCTATTGCATGCTTGCTGTTTGGTGGCTCAAAGAAGAGGCTACCGGATGGTGTCCGTTTGAGAGGGGACATTCATGTCTTGCTGCTGGGTGATCCATCAACAGCAAAATCACAGTTCCTCAAGTTTGTGGAGAAGACAGCGCCGATTGCTGTCTATACATCTGGGAAAGGTTCATCAGCAGCTGGTCTCACAGCGTCAGTAATTCGGGACGGTAGCTCTCGAGAGTTTTATTTGGAAGGAGGGGCCATGGTTTTGGCTGATGGTGGAGTTGTTTGTATTGATGAGTTTGACAAAATGAGGCCTGAGGACCGAGTTGCAATTCACGAAGCAATGGAACAGCAGACCATCTCGATTGCCAAAGCTGGCATTACAACAGTACTCAATTCAAGGACCTCGGTACTAGCAGCTGCCAATCCAATTGCAGGGCGCTACGATGATCTTAAGACTGCACAAGATAACATTGATCTGCAGACAACCATCCTTTCTAGATTTGATCTAATCTTTATTGTTAAAGATGTCAGAATGTATGATCAAGACAAGCGAATTGCAAGCCACATCATTAAGGTGCATGCCAGTGGTGCTGCTGCTTCATCCAAGAATACAGATGCTAGTGAAGGAGAGAATTGGCTAAAAAGGTACATTGAGTATTGCCGTGTTACTTGTAAACCACGACTCTCAGAAAAGGCAGCAGAGATGCTTCAGAACAAATATGTGGAGATTAGACAGAAAATGAGACAACAAGCTCATGAAACAGGGAGGGCTGCAGCTATACCCATCACTGTGCGGCAGCTTGAAGCCATTATACGTTTGAGTGAATCTCTTGCAAAGATGAGATTGACAAGTGTGGCTACACCAGAGCATGTTGAAGAGGCA TTTAGGCTGTTCAA TGTCTCCACTGTTGATGCCGCAAGATCTGGAATCAATGAGCATTTGAACCTATCACCAGATATTGCAAATGAGATCAAGCAAGCTGAGGCACAAATAAAGAGAAGGATGGGAATTGGAAGCCACATATCCGAGCGACGCCTGATCGATGAACTAAATAGGATGGGGATGAATGAATCCATTGTGCGAAGAGCCCTTCTGATCATGCACCAAAGGGATGAAGTGGAGTACAAGAGAGAGCGCCATGTCATTGTCCGGAAGGCTTGAGGTGAACTGTGGAGTATTTATAAATCGAGGACAACTTCTATTCAGACTGTATAAGGCTATGAGTTCACTGAAACTGTAATCTCTGGGAGAAGACAAGGACATGTTTGAGTTTCGGTTGATCACTGACATGACCATTGTAATCTGCAAGAGTAGAAGAAATGCACTCCGTCCTTGATGAAACTGTAGTTAAACTACAGTATTAAAGATGTAACTGTAGTGAAACCATG TAACCAGGG TTCTGAAATGGCTAAT GTATTAAACTACAGTATTA ATTCATGGATATAAATGGCTAATATTCTGCA                                                                                               ]
[+] EMBL OSSS30019            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTTTGGCTGATGGTGGAGTTGTTTGTATTGATGAGTTTGACAAAATGAGGCCTGAGNCCCGAGTTGCAATTCACGAAGCAATGGAACAGCAGACCATCTCGATTGCCAAAGCTGGCATTACAACAGTACTCAATTCAAGGACCTCGGTACTAGCAGCTGCCAATCCAATTGCAGGGCGCTACGATGATCTTAAGACTGCACAAGATAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CA764819             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 aaggGGGAGGGCTGCAGCTNTACCCATCACTGTGCGGCAGCCTGAAGCC TTNTACGTTTGAGTGAATCTCTTGCAAAGATGAGATTGACAAGTGTGGCTACACCANAGCATGTTGAAGAGGCACTTTGGGCTGTTCAACTGTCTCCACTGTTGATGCCGCAAGATCTGNAATCAATGAGCATTTGANCCTATCACCAGATATTGCAAATGAGATCAAGCANGCTGAGGCACAAATAAAGAGANGGATGGGAATTGNAAGCCACATATNCGAGCGACGCCTGATCGATGAACTAAATAGGATGGCGATGAATGAATCCATTGTGCGAAGAGCCCTTCTGNTCATGCACCAAAGGGATGAAGNGNAGTACAAGAGAGAGCGCCATGTCATTGTCCGGAAGGCTTGAGGTGAACTGNGGAGNATTTATAAATCGAGGACAACTTCTATTCAGACTGTATAAGGCTATGAGTTCACTGAAACTGTAATCTCTGGGAGAAGACAAGGACATGTTTGAGTTTCGGTTGATCACTGACATGACCATTGTAATCTGNAANAGTACAANAAATGCAGNCCGTCCTTGATGAAACTGTAGTTAAACTACAGTATTAAAGATGTAACTGTAGCGAAACCATGNTAACCAGGGCNTCTGAAATGGCTAATGGTTTTAAACTACAGTATTANTTTCATGGATATAAATGNCTAATATTCTGCANTGCCCCAGACAAGAATTNAAAGGGAGCAGAATTCAGCTGATTAAAAAAAAAAAAAAAAACAAAAANCGCCCNCCCCCCGCGGTNGAACCTNCAN]


>consensus_4646#0 CCCTTTCCCCGCCGCCCGCGCACCCACGCGTCTCTCTCCCTCTCTCTCCGCCGCCGCCGC CGCCGCAGCCAGCCAGCCATCCAGCCATGTCGGGTTGGGACGAGGGCGCCGTCTTCTACA GCGACCAGGCGCAGTTCCCGCGCGGCGGCCCCGGCGGCGACCCCTCCGCCGACCTCACCC GCCACTCCGCCCTCCGCAAGTTCAAGGAGTTCCTCCGCGGCTTCACCGGCCCAACCGGCG ACTTCCCCTACCGCGAGAGCCTGGTGCACAACCGCGACCATGTCACCGTCGCCATCGAGG ACCTCGACGCCTTCGACGCCGAGCTGTCCGACAAGATCCGGAAGTCTCCCGCTGATTACC TACCGCTGTTTGAGACGGCTGCGTCCGAGGTCCTCGCGAGCCTTCGGTCCAAGGTCGCTG GAGAGACCGGCGAGATGGAGGAGCCCGCCACCGGCGACGTGCAGATCTTCTTGTCCTCAA AGGAGAACTGCCTGTCCATGAGGTCTATTGGGGCGGATTACATGTCCAAGCTGGTGAAGA TTGCCGGGATCACAATCGCCGCGTCGAGGGTGAAAGCTAAGGCCACTCATGTCACGCTGC TCTGCAAGAACTGCAGAAGTGTGAAAACGGTGCCGTGTAGGCCTGGCCTTGGTGGGGCTA TTGTCCCACGATCGTGCGACCATGTTCCTCAGCCTGGAGAAGAGCCTTGCCCCTTGGACC CCTGGATTGCAGTTCCAGATAAGAGCAAGTATGTGGATCTCCAGACCCTCAAATTGCAGG AAAATCCTGAGGATGTTCCAACTGGTGAGCTCCCGAGGAATATGCTGCTGTCCGTAGACA GGCATCTTGTTCAGACCATTGTTCCTGGAACTAGATTAACTGTAATTGGTATCTACAGTG TCTACCAAGCATCTGCAAACCAAAAGGGTGCTGTTGGAGTCAAACAGCCTTACATTAGAG TTGTGGGGTTGGAGCAGTCCCGAGATGCCAACTCGAATGGTCCCTCAAATTTTACACTTG ATGAGGAAATGGAATTCAAAGAATTTGCACAGAGGCCAGATGCATATGTCAAGATTTGCT CAATGATTGGCCCTTCAATTTATGGCCATTCTGATGTCAAGAAAGCTATTGCATGCTTGC TGTTTGGTGGCTCAAAGAAGAGGCTACCGGATGGTGTCCGTTTGAGAGGGGACATTCATG TCTTGCTGCTGGGTGATCCATCAACAGCAAAATCACAGTTCCTCAAGTTTGTGGAGAAGA CAGCGCCGATTGCTGTCTATACATCTGGGAAAGGTTCATCAGCAGCTGGTCTCACAGCGT CAGTAATTCGGGACGGTAGCTCTCGAGAGTTTTATTTGGAAGGAGGGGCCATGGTTTTGG CTGATGGTGGAGTTGTTTGTATTGATGAGTTTGACAAAATGAGGCCTGAGGACCGAGTTG CAATTCACGAAGCAATGGAACAGCAGACCATCTCGATTGCCAAAGCTGGCATTACAACAG TACTCAATTCAAGGACCTCGGTACTAGCAGCTGCCAATCCAATTGCAGGGCGCTACGATG ATCTTAAGACTGCACAAGATAACATTGATCTGCAGACAACCATCCTTTCTAGATTTGATC TAATCTTTATTGTTAAAGATGTCAGAATGTATGATCAAGACAAGCGAATTGCAAGCCACA TCATTAAGGTGCATGCCAGTGGTGCTGCTGCTTCATCCAAGAATACAGATGCTAGTGAAG GAGAGAATTGGCTAAAAAGGTACATTGAGTATTGCCGTGTTACTTGTAAACCACGACTCT CAGAAAAGGCAGCAGAGATGCTTCAGAACAAATATGTGGAGATTAGACAGAAAATGAGAC AACAAGCTCATGAAACAGGGAGGGCTGCAGCTATACCCATCACTGTGCGGCAGCTTGAAG CCATTATACGTTTGAGTGAATCTCTTGCAAAGATGAGATTGACAAGTGTGGCTACACCAG AGCATGTTGAAGAGGCATTTAGGCTGTTCAATGTCTCCACTGTTGATGCCGCAAGATCTG GAATCAATGAGCATTTGAACCTATCACCAGATATTGCAAATGAGATCAAGCAAGCTGAGG CACAAATAAAGAGAAGGATGGGAATTGGAAGCCACATATCCGAGCGACGCCTGATCGATG AACTAAATAGGATGGGGATGAATGAATCCATTGTGCGAAGAGCCCTTCTGATCATGCACC AAAGGGATGAAGTGGAGTACAAGAGAGAGCGCCATGTCATTGTCCGGAAGGCTTGAGGTG AACTGTGGAGTATTTATAAATCGAGGACAACTTCTATTCAGACTGTATAAGGCTATGAGT TCACTGAAACTGTAATCTCTGGGAGAAGACAAGGACATGTTTGAGTTTCGGTTGATCACT GACATGACCATTGTAATCTGCAAGAGTAGAAGAAATGCACTCCGTCCTTGATGAAACTGT AGTTAAACTACAGTATTAAAGATGTAACTGTAGTGAAACCATGTAACCAGGGTTCTGAAA TGGCTAATGTATTAAACTACAGTATTAATTCATGGATATAAATGGCTAATATTCTGCANT GCCCCAGACAAGAATTNAAAGGGAGCAGAATTCAGCTGATTAAAAAAAAAAAAAAAAACA AAAANCGCCCNCCCCCCGCGGTNGAACCTNCAN



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)