Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4650 cluster # 4650       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4650#0 length = 678 sequences # 1  
consensus_4650#1 length = 512 sequences # 1  
consensus_4650#2 length = 304 sequences # 1  

consensusID : consensus_4650#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 678
fasta sequence
                              [TTTTTTTTGATGCCACATATGTAGCCTTTGAATCTCATTATTTCCAATAAAAAAACTTATGATACTACAGTTTGCAAAGCACACCATTAGCTATATTTGCCCGGTCCACCGTAGTATACATGCATACCATTTTCATTAAGTCCATAGTCATCATAGGTGTATAATTTTGGATTGTCGGCTCGAGGATGGGCACTACGGATGCTTGGGGTAACCAGCTTGTTGTTCTCATCTTCAATAGCTTGAATATTCCTAACAAAAGCTGCTTTGCCAAATCCTTCAGAAGCGAAGTGCCCACTACCAATTTGTGGTGGGTCCGAAGAAGCTGTTGGACCTTGAACATATCCACCCCAAAATGCAAAATCACATTTGTCCTTCATGGATGAAAATTGGGAACTCGGCCAATATCCAATAGGTGTATTATTTGAACCATATGCTAGCCACCAATTCTTAGGCTTTGGATCCTTAGAAATAACAACATCTATGACATATTGGGGTCCATTATAGACGGAGATGGGATGTACTCTTCCTCCAGGACCAACACTGGGACTACCTTGCGCGAAACCAGGACCGTTATTATCACTAGAATTTTTTTCCAGGCCTTCATTAGCCAAGAAATATGGAACTTAGTGGAGTTGGCTCCAGTGAAGGTTGGGAAACCCGATGAGCCCACCACCTAAG]

[+] EMBL CA762022             [TTTTTTTTGATGCCACATATGTAGCCTTTGAATCTCATTATTTCCAATAAAAAAACTTATGATACTACAGTTTGCAAAGCACACCATTAGCTATATTTGCCCGGTCCACCGTAGTATACATGCATACCATTTTCATTAAGTCCATAGTCATCATAGGTGTATAATTTTGGATTGTCGGCTCGAGGATGGGCACTACGGATGCTTGGGGTAACCAGCTTGTTGTTCTCATCTTCAATAGCTTGAATATTCCTAACAAAAGCTGCTTTGCCAAATCCTTCAGAAGCGAAGTGCCCACTACCAATTTGTGGTGGGTCCGAAGAAGCTGTTGGACCTTGAACATATCCACCCCAAAATGCAAAATCACATTTGTCCTTCATGGATGAAAATTGGGAACTCGGCCAATATCCAATAGGTGTATTATTTGAACCATATGCTAGCCACCAATTCTTAGGCTTTGGATCCTTAGAAATAACAACATCTATGACATATTGGGGTCCATTATAGACGGAGATGGGATGTACTCTTCCTCCAGGACCAACACTGGGACTACCTTGCGCGAAACCAGGACCGTTATTATCACTAGAATTTTTTTCCAGGCCTTCATTAGCCAAGAAATATGGAACTTAGTGGAGTTGGCTCCAGTGAAGGTTGGGAAACCCGATGAGCCCACCACCTAAG]


>consensus_4650#0 TTTTTTTTGATGCCACATATGTAGCCTTTGAATCTCATTATTTCCAATAAAAAAACTTAT GATACTACAGTTTGCAAAGCACACCATTAGCTATATTTGCCCGGTCCACCGTAGTATACA TGCATACCATTTTCATTAAGTCCATAGTCATCATAGGTGTATAATTTTGGATTGTCGGCT CGAGGATGGGCACTACGGATGCTTGGGGTAACCAGCTTGTTGTTCTCATCTTCAATAGCT TGAATATTCCTAACAAAAGCTGCTTTGCCAAATCCTTCAGAAGCGAAGTGCCCACTACCA ATTTGTGGTGGGTCCGAAGAAGCTGTTGGACCTTGAACATATCCACCCCAAAATGCAAAA TCACATTTGTCCTTCATGGATGAAAATTGGGAACTCGGCCAATATCCAATAGGTGTATTA TTTGAACCATATGCTAGCCACCAATTCTTAGGCTTTGGATCCTTAGAAATAACAACATCT ATGACATATTGGGGTCCATTATAGACGGAGATGGGATGTACTCTTCCTCCAGGACCAACA CTGGGACTACCTTGCGCGAAACCAGGACCGTTATTATCACTAGAATTTTTTTCCAGGCCT TCATTAGCCAAGAAATATGGAACTTAGTGGAGTTGGCTCCAGTGAAGGTTGGGAAACCCG ATGAGCCCACCACCTAAG



consensusID : consensus_4650#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 512
fasta sequence
                              [GNTCGATTATTTNCAATAAANAAACTTGTGATNCTACAGTNTGCANNAGGNACACCATTAGGCTATANTTGCCCGGNNCACCGTAGTGTNCATGCATACCATCATCATTAAGTCCATAGTCATCATAGGTGTATAATTNTGNAATTGTCGGCTCGAGGATGGGCNCTACGTATGCTTGGGGTAACCAGCTTGTTGTTCTCATCTTCAATAGCTTGAATATTCCTANCNAAAGCTGCTTTGCCAAATCCTTCGGAANCGAAGTGNCCACTNNCAATATGTGGTGGGTCCGAAGAAGCTGTTGGACCTTGAACATATCCACCCCANAATGCAAAATTNCATTTGTCCTTCATGGATGAAAATTGTGAACTCGGCCAATATCCAATAGGTGTATTATTTGAACCATATGCTAGCCACCAATTCTTAGTCTTTGGATCCTTAAAAATAAGAACATCTATTACATANTGTGGTCCATTATAGACGGAGATAGGATGTACTCTTCCTCCAAGACCAAC]

[-] EMBL CB096581             [GNTCGATTATTTNCAATAAANAAACTTGTGATNCTACAGTNTGCANNAGGNACACCATTAGGCTATANTTGCCCGGNNCACCGTAGTGTNCATGCATACCATCATCATTAAGTCCATAGTCATCATAGGTGTATAATTNTGNAATTGTCGGCTCGAGGATGGGCNCTACGTATGCTTGGGGTAACCAGCTTGTTGTTCTCATCTTCAATAGCTTGAATATTCCTANCNAAAGCTGCTTTGCCAAATCCTTCGGAANCGAAGTGNCCACTNNCAATATGTGGTGGGTCCGAAGAAGCTGTTGGACCTTGAACATATCCACCCCANAATGCAAAATTNCATTTGTCCTTCATGGATGAAAATTGTGAACTCGGCCAATATCCAATAGGTGTATTATTTGAACCATATGCTAGCCACCAATTCTTAGTCTTTGGATCCTTAAAAATAAGAACATCTATTACATANTGTGGTCCATTATAGACGGAGATAGGATGTACTCTTCCTCCAAGACCAAC]


>consensus_4650#1 GNTCGATTATTTNCAATAAANAAACTTGTGATNCTACAGTNTGCANNAGGNACACCATTA GGCTATANTTGCCCGGNNCACCGTAGTGTNCATGCATACCATCATCATTAAGTCCATAGT CATCATAGGTGTATAATTNTGNAATTGTCGGCTCGAGGATGGGCNCTACGTATGCTTGGG GTAACCAGCTTGTTGTTCTCATCTTCAATAGCTTGAATATTCCTANCNAAAGCTGCTTTG CCAAATCCTTCGGAANCGAAGTGNCCACTNNCAATATGTGGTGGGTCCGAAGAAGCTGTT GGACCTTGAACATATCCACCCCANAATGCAAAATTNCATTTGTCCTTCATGGATGAAAAT TGTGAACTCGGCCAATATCCAATAGGTGTATTATTTGAACCATATGCTAGCCACCAATTC TTAGTCTTTGGATCCTTAAAAATAAGAACATCTATTACATANTGTGGTCCATTATAGACG GAGATAGGATGTACTCTTCCTCCAAGACCAAC



consensusID : consensus_4650#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence
                              [TNTCATTATTTCCAATAAAAAAACTNATGATANAACAGTTTGCAAAGCACACCATTAGAATATTTGCCCGGTCCACCGTAGTANACATGCATACTATCATCATTAAGTCCATAGTCATCATAGGTGNATAATTTTGGATTGTGGTCTNGAGGATGGGCATTACGGATGCTTGGGGTAACCAGCTTGTTGTTNTCATCTTCAATAGCTTGAATATTCNTAACAAAAGCTGNTTTGCCAAATCTTTCAGAAGNGAAGTGCCCACTACCAATTTGTGGTGGGTCCGAAGAAGCTGTGCGAATCCACC]

[-] EMBL BE228493             [TNTCATTATTTCCAATAAAAAAACTNATGATANAACAGTTTGCAAAGCACACCATTAGAATATTTGCCCGGTCCACCGTAGTANACATGCATACTATCATCATTAAGTCCATAGTCATCATAGGTGNATAATTTTGGATTGTGGTCTNGAGGATGGGCATTACGGATGCTTGGGGTAACCAGCTTGTTGTTNTCATCTTCAATAGCTTGAATATTCNTAACAAAAGCTGNTTTGCCAAATCTTTCAGAAGNGAAGTGCCCACTACCAATTTGTGGTGGGTCCGAAGAAGCTGTGCGAATCCACC]


>consensus_4650#2 TNTCATTATTTCCAATAAAAAAACTNATGATANAACAGTTTGCAAAGCACACCATTAGAA TATTTGCCCGGTCCACCGTAGTANACATGCATACTATCATCATTAAGTCCATAGTCATCA TAGGTGNATAATTTTGGATTGTGGTCTNGAGGATGGGCATTACGGATGCTTGGGGTAACC AGCTTGTTGTTNTCATCTTCAATAGCTTGAATATTCNTAACAAAAGCTGNTTTGCCAAAT CTTTCAGAAGNGAAGTGCCCACTACCAATTTGTGGTGGGTCCGAAGAAGCTGTGCGAATC CACC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4650#0      TTTTTTTTGATGCCACATATGTAGCCTTTGAATCTCATTATTTCCAATAAAAAAACTTAT 60
consensus_4650#2      --------------------------------TNTCATTATTTCCAATAAAAAAACTNAT 28
consensus_4650#1      -------------------------------GNTCGATTATTTNCAATAAANAAACTTGT 29
                                                          ******* ******* *****  *

consensus_4650#0      GATACTACAGTTTGCAAA--GCACACCATTAGCT-ATATTTGCCCGGTCCACCGTAGTAT 117
consensus_4650#2      GATANAACAGTTTGCAAA--GCACACCATTAGA--ATATTTGCCCGGTCCACCGTAGTAN 84
consensus_4650#1      GATNCTACAGTNTGCANNAGGNACACCATTAGGCTATANTTGCCCGGNNCACCGTAGTGT 89
                      ***   ***** ****    * **********   *** ********  *********  

consensus_4650#0      ACATGCATACCATTTTCATTAAGTCCATAGTCATCATAGGTGTATAATTTTGGA-TTGTC 176
consensus_4650#2      ACATGCATACTATCATCATTAAGTCCATAGTCATCATAGGTGNATAATTTTGGA-TTGTG 143
consensus_4650#1      NCATGCATACCATCATCATTAAGTCCATAGTCATCATAGGTGTATAATTNTGNAATTGTC 149
                       ********* **  *************************** ****** ** * **** 

consensus_4650#0      GGCTCGAGGATGGGCACTACGGATGCTTGGGGTAACCAGCTTGTTGTTCTCATCTTCAAT 236
consensus_4650#2      GTCTNGAGGATGGGCATTACGGATGCTTGGGGTAACCAGCTTGTTGTTNTCATCTTCAAT 203
consensus_4650#1      GGCTCGAGGATGGGCNCTACGTATGCTTGGGGTAACCAGCTTGTTGTTCTCATCTTCAAT 209
                      * ** **********  **** ************************** ***********

consensus_4650#0      AGCTTGAATATTCCTAACAAAAGCTGCTTTGCCAAATCCTTCAGAAGCGAAGTGCCCACT 296
consensus_4650#2      AGCTTGAATATTCNTAACAAAAGCTGNTTTGCCAAATCTTTCAGAAGNGAAGTGCCCACT 263
consensus_4650#1      AGCTTGAATATTCCTANCNAAAGCTGCTTTGCCAAATCCTTCGGAANCGAAGTGNCCACT 269
                      ************* ** * ******* *********** *** ***  ****** *****

consensus_4650#0      ACCAATTTGTGGTGGGTCCGAAGAAGCTGTTGGACCTTGAACATATCCACCCCAAAATGC 356
consensus_4650#2      ACCAATTTGTGGTGGGTCCGAAGAAGCTGTGCGAATCCACC------------------- 304
consensus_4650#1      NNCAATATGTGGTGGGTCCGAAGAAGCTGTTGGACCTTGAACATATCCACCCCANAATGC 329
                        **** ***********************  **                          

consensus_4650#0      AAAATCACATTTGTCCTTCATGGATGAAAATTGGGAACTCGGCCAATATCCAATAGGTGT 416
consensus_4650#2      ------------------------------------------------------------
consensus_4650#1      AAAATTNCATTTGTCCTTCATGGATGAAAATTGTGAACTCGGCCAATATCCAATAGGTGT 389
                                                                                  

consensus_4650#0      ATTATTTGAACCATATGCTAGCCACCAATTCTTAGGCTTTGGATCCTTAGAAATAACAAC 476
consensus_4650#2      ------------------------------------------------------------
consensus_4650#1      ATTATTTGAACCATATGCTAGCCACCAATTCTTAGTCTTTGGATCCTTAAAAATAAGAAC 449
                                                                                  

consensus_4650#0      ATCTATGACATATTGGGGTCCATTATAGACGGAGATGGGATGTACTCTTCCTCCAGGACC 536
consensus_4650#2      ------------------------------------------------------------
consensus_4650#1      ATCTATTACATANTGTGGTCCATTATAGACGGAGATAGGATGTACTCTTCCTCCAAGACC 509
                                                                                  

consensus_4650#0      AACACTGGGACTACCTTGCGCGAAACCAGGACCGTTATTATCACTAGAATTTTTTTCCAG 596
consensus_4650#2      ------------------------------------------------------------
consensus_4650#1      AAC--------------------------------------------------------- 512
                                                                                  

consensus_4650#0      GCCTTCATTAGCCAAGAAATATGGAACTTAGTGGAGTTGGCTCCAGTGAAGGTTGGGAAA 656
consensus_4650#2      ------------------------------------------------------------
consensus_4650#1      ------------------------------------------------------------
                                                                                  

consensus_4650#0      CCCGATGAGCCCACCACCTAAG 678
consensus_4650#2      ----------------------
consensus_4650#1      ----------------------
                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)