cluster # 4651

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4651 cluster # 4651 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4651#0 length = 415 sequences # 2

consensus_4651#1 length = 277 sequences # 1

consensusID : consensus_4651#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 415
fasta sequence

                              [GCGTGTTCCCAGCTGACGAGGAACGTGTTCATGAACCCGGACGTGAGGGTGAACAAGAGCCACCGCCAGAGCCCGTGCTGGAGAACGCCGACGAGGGGGAGAAGTATCACCACCAC-GCCTGTCC-CCGATTCCTC-GCACGCAGCGCCCCGAGGTCTTCCCGGCGATCAACCGCTTCTTC-CC-GCCC-GCCACCGTCCCCAAGAGTGACCGTCAAAACTGATCCTCCAAATGCTTATTACCCGCTATATAGTAATGTACTCCTATATTAATTATACCCAAATGAGAGCCTGATTATAGTGCTATCCACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCACACGTGTGAACTTAATCGTATCTGAATAAAATGAGATAAAAATGAAGAAATGCCACCTAAAAAAAAAA]

[+] EMBL BI803154             [GCGTGTTCCCAGCTGACGAGGAACGTGTTCATGAACCCGGACGTGAGGGTGAACAAGAGCCACCGCCAGAGCCCGTGCTGGAGAACGCCGACGAGGGGGAGAAGTATCACCACCAC GCCTGTCC CCGATTCCTC GCACGCAGCGCCCCGAGGTCTTCCCGGCGATCAACCGCTTCTTC CC GCCC GCCACCGTCCCCAAGAGTGACCGTCAAAACTGATCCTCCAAATGCTTATTACCCGCTATATAGTAATGTACTCCTATATTAATTATACCCAAATGAGAGCCTGATTATAGTGCTATCCACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCACACGTGTGAACTTAATCGTATCTGAATAAAATGAGATAAAAATGAAGAAATGCCACCTAAAAA     ]
[+] EMBL BI801930             [  GTGTT CCAGCTGACGAGGAACGTGTTCATGAACCCGGACGTGAGGGTGAACAAGAGCCACCGCCAGAGCCCGTGCTGGAGAACGCCGACGAGGGGGAGAAGTATCACCACCACAGCCT TCCGCCGATTCCTCGGCACGCAGCGCCCCGAGGTCTTCCCGGCGATCAACCGCTTCTTCGCCGGCCCGGCCACCGTCCCCAAGAGTGACCGTCAAAACTGATCCTCCAAATGCTTATTAGCCGCTATATAGTAATGTACTCCTATATTAATTATAGCCAAATGAGAGGCTGATTATAGTGCTATCCACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCACACGTGTGAACTTAATCGTATCTGAATAAAATGAGATCACCATGAAGAAATGGCACCTAAAAAAAAAA]




>consensus_4651#0
GCGTGTTCCCAGCTGACGAGGAACGTGTTCATGAACCCGGACGTGAGGGTGAACAAGAGC
CACCGCCAGAGCCCGTGCTGGAGAACGCCGACGAGGGGGAGAAGTATCACCACCACGCCT
GTCCCCGATTCCTCGCACGCAGCGCCCCGAGGTCTTCCCGGCGATCAACCGCTTCTTCCC
GCCCGCCACCGTCCCCAAGAGTGACCGTCAAAACTGATCCTCCAAATGCTTATTACCCGC
TATATAGTAATGTACTCCTATATTAATTATACCCAAATGAGAGCCTGATTATAGTGCTAT
CCACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCACACGTGTGAACTT
AATCGTATCTGAATAAAATGAGATAAAAATGAAGAAATGCCACCTAAAAAAAAAA

consensusID : consensus_4651#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence

                              [GATGGACTGAAGGAGTAGAAACCTTTGAGTGACCGTCAAAACTGATCCTCCAAATGCTTATTAGCCGCTATATAGTAATGTACTCCTATATTAATTATAGCCAAATGAGAGGCTGATTATAGTGCTATACACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCATACGTGCGAACTTAATCGTATCTGAATAAAATGAGATAAAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF316545             [GATGGACTGAAGGAGTAGAAACCTTTGAGTGACCGTCAAAACTGATCCTCCAAATGCTTATTAGCCGCTATATAGTAATGTACTCCTATATTAATTATAGCCAAATGAGAGGCTGATTATAGTGCTATACACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCATACGTGCGAACTTAATCGTATCTGAATAAAATGAGATAAAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4651#1
GATGGACTGAAGGAGTAGAAACCTTTGAGTGACCGTCAAAACTGATCCTCCAAATGCTTA
TTAGCCGCTATATAGTAATGTACTCCTATATTAATTATAGCCAAATGAGAGGCTGATTAT
AGTGCTATACACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCATACGT
GCGAACTTAATCGTATCTGAATAAAATGAGATAAAAATGAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4651#0      GCGTGTTCCCAGCTGACGAGGAACGTGTTCATGAACCCGGACGTGAGGGTGAACAAGAGC 60
consensus_4651#1      ------------------------------------------------------------
                                                                                  

consensus_4651#0      CACCGCCAGAGCCCGTGCTGGAGAACGCCGACGAGGGGGAGAAGTATCACCACCACGCCT 120
consensus_4651#1      ------------------------------------------------------------
                                                                                  

consensus_4651#0      GTCCCCGATTCCTCGCACGCAGCGCCCCGAGGTCTTCCCGGCGATCAACCGCTTCTTCCC 180
consensus_4651#1      ----------------------------------------------------GATGGACT 8
                                                                                * 

consensus_4651#0      GCCCGCCACCGTCCCCAAGAGTGACCGTCAAAACTGATCCTCCAAATGCTTATTACCCGC 240
consensus_4651#1      GAAGGAGTAGAAACCTTTGAGTGACCGTCAAAACTGATCCTCCAAATGCTTATTAGCCGC 68
                      *   *        **   ************************************* ****

consensus_4651#0      TATATAGTAATGTACTCCTATATTAATTATACCCAAATGAGAGCCTGATTATAGTGCTAT 300
consensus_4651#1      TATATAGTAATGTACTCCTATATTAATTATAGCCAAATGAGAGGCTGATTATAGTGCTAT 128
                      ******************************* *********** ****************

consensus_4651#0      CCACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCACACGTGTGAACTT 360
consensus_4651#1      ACACGGGTACTTTAATTACTGAGTTTTGTTACTGGATATGTGTCGCATACGTGCGAACTT 188
                       ********************************************** ***** ******

consensus_4651#0      AATCGTATCTGAATAAAATGAGATAAAAATGAAGAAATGCCACCTAAAAAAAAAA----- 415
consensus_4651#1      AATCGTATCTGAATAAAATGAGATAAAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 248
                      ********************************* ***    *   **********     

consensus_4651#0      -----------------------------
consensus_4651#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAA 277