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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4656#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1975 fasta sequence
[GGGCCGGCACGGGGCGGCCCGTTTAGCCACCCCAACTCACCCGCCGTGCCGTCCGCCGTCGCCGACGCAAATCGCCGTCGCTGTCGCTTGGCTCGGAGTTCACCATCGCCGAGCGTGGAGGTCCACGCCGCTGGTAGCCATCGCCCGCCCAGATCTGGCGGCTGTCGCTCTCCGCGGGCGGCGGCTGCGTCCACCGCGAATCGAGTCCGCCTGAACTGAATCCATTCCCCACCGCCGGCAGCCAGGATGAGTTCCCGGCGGCCGAGGCGGCTGCTGCTGACTCTCCCCGACGAGGTGCTGGAGGAGATCTTCCTCCGCCTCGACGCCCTCCCCGACCTCGCCCGCGCCTCCGCCGCCTGCGCCACGTTCCGCCGCCTCATCACCGCCCGCGCCTTCCTCCGCCGCCTCCACAGCCTCCACCCGCGTCCCCTCCTCGGCTTCTTCAAACGGGAAGGCCCATCGTGCGAGTTCTTCCCCGCCGCGCCGCCCCACTCCTCCTCCGCCGCCGCCAGTGCCGTCGCGCGGGGGGCAGCCGACCTCACCTTCTCCTTCCTCCCCGCCACGCCCGGCGGGTGGCGGCTCCGCAACATCCGCCGCGGCCTCGCCCTCCTATCAACCCGCGACGGCGGCGGCGGATGCTTCTTCCCCGACGTCGTGGTCTGCGACCCCTTGCACCGGCGGTACGCTCAGATTCCCCAAATCCCCGACGACCTAGCGGCCCCCATCCGCCGGAGCGGCAGTTTGCCCAAGGGTTTCGATTACTTGCTCGCTCCAGCCCGCAGGGAGGAAGAGGAGGAGGAGGAGGAGGATTCATCATTCAAAGTGGTGTGCAGACCCAGGTTGACAGAAGAGTGCGATATCACCGTCTTCGTCTTCTCCTCCGGCGCCGGGATCTGGCGCGCCGCCACATTGGGCTCCTCCCTCGCAACAGCTATCTCTGTCACCTCCCGCCCCCGGTGCGTGCACCGCTGCGTCTACTGGCTGACCAGATTCTTGGACAGATTGCTCATCCTGGACACCGACGAGATGGAATTGTCCATGTTTGATAACTTCCCCCCATCCACAGGATTTGTACTGAATCACACCACTGCGGCCATTGCGGAGGCAGGGGAAGACAGGCTTGGGGTGTTTAACCTTGATGTTCACAATGTCAATCTCCTCTCTAGGGCGATCAGGGGCAGCGCCGACGAACAGTGGCGGCATGACAAGACTATCCCATTGCTCCCTGGCTACAGTATTTGGAGATTTGTAAATCACGCTGATGTTGACGGCTACATACTCCTAGGAGGAGTTTTGGGCAGCGGTTTGCAGTCTGATCCCATTACTGATGGATTACAGTATTTCTCACTGGACCTCAAGACATTTCGGCTTGAGAGGCTGTGTCCCATGACAATCTACCAAGCAAGGAACTCTCCAACTGAGTTATATACAAGCTTTCCGCCACCATTATCGCTTTCAAGCATATGAAAACAGGATGCAATTGGCACGGGAGTTGGACAGGCCCGCCCCACTCATTTCTACAGGCTATAGTGTCCAACGGGTTGGCGAGTTGACCAACCAAGCAATGAAGCAAGTAACCTAACAAACTTCTTAGTTGTACCCATACCAAGACTTGCCAAGGCCCAAGGGGGGACGGAGCAGCTTCGGTTGTGAAGATTTATCTGATACCATGCAAGACCAGCTGCTACTGGTTGTAATGGCATCGATTTATTGCTACTCTTCTTTCTTTTTTCCCCCTCTTATGCTGCATTTTGGAACTAAAGTTGCTAGTAGTTTGCAAAGCATAGTATTCAGGCTGCCCCGCCCCTGATGCATATGATGCATTTCAGTGTATGCTCGTTGTTAATTAAGTTTGTTGTTATCCTTAATCTGATGTCAATTTGAGTACGGGAGGCTCTCTTTCCTTGCTACTAGTTTCAGATTGGCTACATCTGCACCGTAAACAGACAGATTTGTACTATATAAAAGTTAATTT]
[+] EMBL AK072221 [GGGCCGGCACGGGGCGGCCCGTTTAGCCACCCCAACTCACCCGCCGTGCCGTCCGCCGTCGCCGACGCAAATCGCCGTCGCTGTCGCTTGGCTCGGAGTTCACCATCGCCGAGCGTGGAGGTCCACGCCGCTGGTAGCCATCGCCCGCCCAGATCTGGCGGCTGTCGCTCTCCGCGGGCGGCGGCTGCGTCCACCGCGAATCGAGTCCGCCTGAACTGAATCCATTCCCCACCGCCGGCAGCCAGGATGAGTTCCCGGCGGCCGAGGCGGCTGCTGCTGACTCTCCCCGACGAGGTGCTGGAGGAGATCTTCCTCCGCCTCGACGCCCTCCCCGACCTCGCCCGCGCCTCCGCCGCCTGCGCCACGTTCCGCCGCCTCATCACCGCCCGCGCCTTCCTCCGCCGCCTCCACAGCCTCCACCCGCGTCCCCTCCTCGGCTTCTTCAAACGGGAAGGCCCATCGTGCGAGTTCTTCCCCGCCGCGCCGCCCCACTCCTCCTCCGCCGCCGCCAGTGCCGTCGCGCGGGGGGCAGCCGACCTCACCTTCTCCTTCCTCCCCGCCACGCCCGGCGGGTGGCGGCTCCGCAACATCCGCCGCGGCCTCGCCCTCCTATCAACCCGCGACGGCGGCGGCGGATGCTTCTTCCCCGACGTCGTGGTCTGCGACCCCTTGCACCGGCGGTACGCTCAGATTCCCCAAATCCCCGACGACCTAGCGGCCCCCATCCGCCGGAGCGGCAGTTTGCCCAAGGGTTTCGATTACTTGCTCGCTCCAGCCCGCAGGGAGGAAGAGGAGGAGGAGGAGGAGGATTCATCATTCAAAGTGGTGTGCAGACCCAGGTTGACAGAAGAGTGCGATATCACCGTCTTCGTCTTCTCCTCCGGCGCCGGGATCTGGCGCGCCGCCACATTGGGCTCCTCCCTCGCAACAGCTATCTCTGTCACCTCCCGCCCCCGGTGCGTGCACCGCTGCGTCTACTGGCTGACCAGATTCTTGGACAGATTGCTCATCCTGGACACCGACGAGATGGAATTGTCCATGTTTGATAACTTCCCCCCATCCACAGGATTTGTACTGAATCACACCACTGCGGCCATTGCGGAGGCAGGGGAAGACAGGCTTGGGGTGTTTAACCTTGATGTTCACAATGTCAATCTCCTCTCTAGGGCGATCAGGGGCAGCGCCGACGAACAGTGGCGGCATGACAAGACTATCCCATTGCTCCCTGGCTACAGTATTTGGAGATTTGTAAATCACGCTGATGTTGACGGCTACATACTCCTAGGAGGAGTTTTGGGCAGCGGTTTGCAGTCTGATCCCATTACTGATGGATTACAGTATTTCTCACTGGACCTCAAGACATTTCGGCTTGAGAGGCTGTGTCCCATGACAATCTACCAAGCAAGGAACTCTCCAACTGAGTTATATACAAGCTTTCCGCCACCATTATCGCTTTCAAGCATATGAAAACAGGATGCAATTGGCACGGGAGTTGGACAGGCCCGCCCCACTCATTTCTACAGGCTATAGTGTCCAACGGGTTGGCGAGTTGACCAACCAAGCAATGAAGCAAGTAACCTAACAAACTTCTTAGTTGTACCCATACCAAGACTTGCCAAGGCCCAAGGGGGGACGGAGCAGCTTCGGTTGTGAAGATTTATCTGATACCATGCAAGACCAGCTGCTACTGGTTGTAATGGCATCGATTTATTGCTACTCTTCTTTCTTTTTTCCCCCTCTTATGCTGCATTTTGGAACTAAAGTTGCTAGTAGTTTGCAAAGCATAGTATTCAGGCTGCCCCGCCCCTGATGCATATGATGCATTTCAGTGTATGCTCGTTGTTAATTAAGTTTGTTGTTATCCTTAATCTGATGTCAATTTGAGTACGGGAGGCTCTCTTTCCTTGCTACTAGTTTCAGATTGGCTACATCTGCACCGTAAACAGACAGATTTGTACTATATAAAAGTTAATTT]
[+] EMBL AK104961 [ CCCCAACTCACCCGCCGTGCCGTCCGCCGTCGCCGACGCAAATCGCCGTCGCTGTCGCTTGGCTCGGAGTTCACCATCGCCGAGCGTGGAGGTCCACGCCGCTGGTAGCCATCGCCCGCCCAGATCTGGCGGCTGTCGCTCTCCGCGGGCGGCGGCTGCGTCCACCGCGAATCGAGTCCGCCTGAACTGAATCCATTCCCCACCGCCGGCAGCCAGGATGAGTTCCCGGCGGCCGAGGCGGCTGCTGCTGACTCTCCCCGACGAGGTGCTGGAGGAGATCTTCCTCCGCCTCGACGCCCTCCCCGACCTCGCCCGCGCCTCCGCCGCCTGCGCCACGTTCCGCCGCCTCATCACCGCCCGCGCCTTCCTCCGCCGCCTCCACAGCCTCCACCCGCGTCCCCTCCTCGGCTTCTTCAAACGGGAAGGCCCATCGTGCGAGTTCTTCCCCGCCGCGCCGCCCCACTCCTCCTCCGCCGCCGCCAGTGCCGTCGCGCGGGGGGCAGCCGACCTCACCTTCTCCTTCCTCCCCGCCACGCCCGGCGGGTGGCGGCTCCGCAACATCCGCCGCGGCCTCGCCCTCCTATCAACCCGCGACGGCGGCGGCGGATGCTTCTTCCCCGACGTCGTGGTCTGCGACCCCTTGCACCGGCGGTACGCTCAGATTCCCCAAATCCCCGACGACCTAGCGGCCCCCATCCGCCGGAGCGGCAGTTTGCCCAAGGGTTTCGATTACTTGCTCGCTCCAGCCCGCAGGGAGGAAGAGGAGGAGGAGGAGGAGGATTCATCATTCAAAGTGGTGTGCAGACCCAGGTTGACAGAAGAGTGCGATATCACCGTCTTCGTCTTCTCCTCCGGCGCCGGGATCTGGCGCGCCGCCACATTGGGCTCCTCCCTCGCAACAGCTATCTCTGTCACCTCCCGCCCCCGGTGCGTGCACCGCTGCGTCTACTGGCTGACCAGATTCTTGGACAGATTGCTCATCCTGGACACCGACGAGATGGAATTGTCCATGTTTGATAACTTCCCCCCATCCACAGGATTTGTACTGAATCACACCACTGCGGCCATTGCGGAGGCAGGGGAAGACAGGCTTGGGGTGTTTAACCTTGATGTTCACAATGTCAATCTCCTCTCTAGGGCGATCAGGGGCAGCGCCGACGAACAGTGGCGGCATGACAAGACTATCCCATTGCTCCCTGGCTACAGTATTTGGAGATTTGTAAATCACGCTGATGTTGACGGCTACATACTCCTAGGAGGAGTTTTGGGCAGCGGTTTGCAGTCTGATCCCATTACTGATGGATTACAGTATTTCTCACTGGACCTCAAGACATTTCGGCTTGAGAGGCTGTGTCCCATGACAATCTACCAAGCAAGGAACTCTCCAACTGAGTTATATACAAGCTTTCCGCCACCATTATCGCTTTCAAGCATATGAAAACAGGATGCAATTGGCACGGGAGTTGGACAGGCCCGCCCCACTCATTTCTACAGGCTATAGTGTCCAACGGGTTGGCGAGTTGACCAACCAAGCAATGAAGCAAGTAACCTAACAAACTTCTTAGTTGTACCCATACCAAGACTTGCCAAGGCCCAAGGGGGGACGGAGCAGCTTCGGTTGTGAAGATTTATCTGATACCATGCAAGACCAGCTGCTACTGGTTGTAATGGCATCGATTTATTGCTACTCTTCTTTCTTTTTTCCCCCTCTTATGCTGCATTTTGGAACTAAAGTTGCTAGTAGTTTGCAAAGCATAGTATTCAGGCTGCCCCGCCCCTGATGCATATGATGCATTTCAGTGTATGCTCGTTGTTAATTAAGTTTGTTGTTATCCTTAATCTGATGTCAATTTGAGTACGGGAGGCTCTCTTTCCTTGCTACTAGTTTCAGATTGGCTACATCTGCACCGTAAACAGACAGATT ]
consensusID : consensus_4656#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[TAGTTTTTTTTTGTCAGTTTTCATGTTGTGGTGAATGGATTGAGTGAGCAGCAACCAAATGTATCTCTGTGCATAAATTTCAAATATTTGTCTATGCTAGGAAATTAGGTTTGCCATTTGAAGCACTTAATACTTCTGACATTTTGATAGAATGTTCCTTGATGACTACTAGCATCAATATAATCTTCGGTGTTTCTGTTCTCTTGTCACATTGATCAGGACTTGCCAAGGCCCAAGGGGGGACGGAGCAGCTTCGGTTGTGAAGATTTATCTGATACCATGCAAGACCAGCTGCTACTGGTTGTAATGGCATCGATTTATTGCTACTCTTCTTTCTTTTTTCCCCCTCTTATGCTGCATTTTGGAACTAAAGTTGCTAGTAGTTTGCAAAGCATAGTAAAAAAACTGCCCCGCCCCTGATGCATATGATGCATTTCAGTGTATGATCGTTGTTAATTAAGTTTGTTGTTATCCTTAATCTGATGTCAATTTGAGTACGGGAGGCTCTCTTTCCTTGCTACTAGTTTCAGATTGGCTACATCTGCACCGTAAACAGACAGATTTGTACTATATAAAAGTTAATTTATTTTAGAACAGAGAGG]
[-] EMBL CB639080 [TAGTTTTTTTTTGTCAGTTTTCATGTTGTGGTGAATGGATTGAGTGAGCAGCAACCAAATGTATCTCTGTGCATAAATTTCAAATATTTGTCTATGCTAGGAAATTAGGTTTGCCATTTGAAGCACTTAATACTTCTGACATTTTGATAGAATGTTCCTTGATGACTACTAGCATCAATATAATCTTCGGTGTTTCTGTTCTCTTGTCACATTGATCAGGACTTGCCAAGGCCCAAGGGGGGACGGAGCAGCTTCGGTTGTGAAGATTTATCTGATACCATGCAAGACCAGCTGCTACTGGTTGTAATGGCATCGATTTATTGCTACTCTTCTTTCTTTTTTCCCCCTCTTATGCTGCATTTTGGAACTAAAGTTGCTAGTAGTTTGCAAAGCATAGTAAAAAAACTGCCCCGCCCCTGATGCATATGATGCATTTCAGTGTATGATCGTTGTTAATTAAGTTTGTTGTTATCCTTAATCTGATGTCAATTTGAGTACGGGAGGCTCTCTTTCCTTGCTACTAGTTTCAGATTGGCTACATCTGCACCGTAAACAGACAGATTTGTACTATATAAAAGTTAATTTATTTTAGAACAGAGAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4656#0 GGGCCGGCACGGGGCGGCCCGTTTAGCCACCCCAACTCACCCGCCGTGCCGTCCGCCGTC 60
consensus_4656#1 ------------------------------------------------------------
consensus_4656#0 GCCGACGCAAATCGCCGTCGCTGTCGCTTGGCTCGGAGTTCACCATCGCCGAGCGTGGAG 120
consensus_4656#1 ------------------------------------------------------------
consensus_4656#0 GTCCACGCCGCTGGTAGCCATCGCCCGCCCAGATCTGGCGGCTGTCGCTCTCCGCGGGCG 180
consensus_4656#1 ------------------------------------------------------------
consensus_4656#0 GCGGCTGCGTCCACCGCGAATCGAGTCCGCCTGAACTGAATCCATTCCCCACCGCCGGCA 240
consensus_4656#1 ------------------------------------------------------------
consensus_4656#0 GCCAGGATGAGTTCCCGGCGGCCGAGGCGGCTGCTGCTGACTCTCCCCGACGAGGTGCTG 300
consensus_4656#1 ------------------------------------------------------------
consensus_4656#0 GAGGAGATCTTCCTCCGCCTCGACGCCCTCCCCGACCTCGCCCGCGCCTCCGCCGCCTGC 360
consensus_4656#1 ------------------------------------------------------------
consensus_4656#0 GCCACGTTCCGCCGCCTCATCACCGCCCGCGCCTTCCTCCGCCGCCTCCACAGCCTCCAC 420
consensus_4656#1 ------------------------------------------------------------
consensus_4656#0 CCGCGTCCCCTCCTCGGCTTCTTCAAACGGGAAGGCCCATCGTGCGAGTTCTTCCCCGCC 480
consensus_4656#1 ------------------------------------------------------------
consensus_4656#0 GCGCCGCCCCACTCCTCCTCCGCCGCCGCCAGTGCCGTCGCGCGGGGGGCAGCCGACCTC 540
consensus_4656#1 ------------------------------------------------------------
consensus_4656#0 ACCTTCTCCTTCCTCCCCGCCACGCCCGGCGGGTGGCGGCTCCGCAACATCCGCCGCGGC 600
consensus_4656#1 ------------------------------------------------------------
consensus_4656#0 CTCGCCCTCCTATCAACCCGCGACGGCGGCGGCGGATGCTTCTTCCCCGACGTCGTGGTC 660
consensus_4656#1 ------------------------------------------------------------
consensus_4656#0 TGCGACCCCTTGCACCGGCGGTACGCTCAGATTCCCCAAATCCCCGACGACCTAGCGGCC 720
consensus_4656#1 ------------------------------------------------------------
consensus_4656#0 CCCATCCGCCGGAGCGGCAGTTTGCCCAAGGGTTTCGATTACTTGCTCGCTCCAGCCCGC 780
consensus_4656#1 ------------------------------------------------------------
consensus_4656#0 AGGGAGGAAGAGGAGGAGGAGGAGGAGGATTCATCATTCAAAGTGGTGTGCAGACCCAGG 840
consensus_4656#1 ------------------------------------------------------------
consensus_4656#0 TTGACAGAAGAGTGCGATATCACCGTCTTCGTCTTCTCCTCCGGCGCCGGGATCTGGCGC 900
consensus_4656#1 ------------------------------------------------------------
consensus_4656#0 GCCGCCACATTGGGCTCCTCCCTCGCAACAGCTATCTCTGTCACCTCCCGCCCCCGGTGC 960
consensus_4656#1 ------------------------------------------------------------
consensus_4656#0 GTGCACCGCTGCGTCTACTGGCTGACCAGATTCTTGGACAGATTGCTCATCCTGGACACC 1020
consensus_4656#1 ------------------------------------------------------------
consensus_4656#0 GACGAGATGGAATTGTCCATGTTTGATAACTTCCCCCCATCCACAGGATTTGTACTGAAT 1080
consensus_4656#1 ------------------------------------------------------------
consensus_4656#0 CACACCACTGCGGCCATTGCGGAGGCAGGGGAAGACAGGCTTGGGGTGTTTAACCTTGAT 1140
consensus_4656#1 ------------------------------------------------------------
consensus_4656#0 GTTCACAATGTCAATCTCCTCTCTAGGGCGATCAGGGGCAGCGCCGACGAACAGTGGCGG 1200
consensus_4656#1 ------------------------------------------------------------
consensus_4656#0 CATGACAAGACTATCCCATTGCTCCCTGGCTACAGTATTTGGAGATTTGTAAATCACGCT 1260
consensus_4656#1 ------------------------------------------------------------
consensus_4656#0 GATGTTGACGGCTACATACTCCTAGGAGGAGTTTTGGGCAGCGGTTTGCAGTCTGATCCC 1320
consensus_4656#1 ------------------------------------------------------------
consensus_4656#0 ATTACTGATGGATTACAGTATTTCTCACTGGACCTCAAGACATTTCGGCTTGAGAGGCTG 1380
consensus_4656#1 ------------------------------------------------------TAGTTT 6
* *
consensus_4656#0 TGTCCCATGACAATCTACCAAGCAAGGAACTCTCCAACTGAGTTATATACAAGCTTTCCG 1440
consensus_4656#1 TTTTTTGTCAGTTTTCATGTTGTGGTGAATGGATTGAGTGAGCAGCAACCAAATGTATCT 66
* * * * * * * *** * **** * *** * *
consensus_4656#0 CCACCATTATCGCTTTCAAGCATATGAAAACAGGATGCAATTGGCACGGGAGTTGGACAG 1500
consensus_4656#1 CTGT--GCATAAATTTCAAATATTTGTCTATGCTAGGAAATTAGGTTTGCCATTTGA--A 122
* ** ****** ** ** * * * **** * * ** **
consensus_4656#0 GCCCGCCCCACTCATTTCTACAGGCTATAGTGTCCAACGGGTTGGCGAGTTGACCAACCA 1560
consensus_4656#1 GCACTTAATACTTCTGACATTTTGATAGAATGTTCC-----TTGATGACT--ACTAGC-- 173
** * *** * * * ** * *** * *** ** * ** * *
consensus_4656#0 AGCAATGAAGCAAGTAACCTAACAAACTTCTTAGTTGTACCCATACCAAGACTTGCCAAG 1620
consensus_4656#1 ATCAATATAATCTTCGGTGTTTCTGTTCTCTT-GTCACATTGAT--CAGGACTTGCCAAG 230
* **** * * * **** ** * ** ** ***********
consensus_4656#0 GCCCAAGGGGGGACGGAGCAGCTTCGGTTGTGAAGATTTATCTGATACCATGCAAGACCA 1680
consensus_4656#1 GCCCAAGGGGGGACGGAGCAGCTTCGGTTGTGAAGATTTATCTGATACCATGCAAGACCA 290
************************************************************
consensus_4656#0 GCTGCTACTGGTTGTAATGGCATCGATTTATTGCTACTCTTCTTTCTTTTTTCCCCCTCT 1740
consensus_4656#1 GCTGCTACTGGTTGTAATGGCATCGATTTATTGCTACTCTTCTTTCTTTTTTCCCCCTCT 350
************************************************************
consensus_4656#0 TATGCTGCATTTTGGAACTAAAGTTGCTAGTAGTTTGCAAAGCATAGTATTCAGGCTGCC 1800
consensus_4656#1 TATGCTGCATTTTGGAACTAAAGTTGCTAGTAGTTTGCAAAGCATAGTAAAAAAACTGCC 410
************************************************* * *****
consensus_4656#0 CCGCCCCTGATGCATATGATGCATTTCAGTGTATGCTCGTTGTTAATTAAGTTTGTTGTT 1860
consensus_4656#1 CCGCCCCTGATGCATATGATGCATTTCAGTGTATGATCGTTGTTAATTAAGTTTGTTGTT 470
*********************************** ************************
consensus_4656#0 ATCCTTAATCTGATGTCAATTTGAGTACGGGAGGCTCTCTTTCCTTGCTACTAGTTTCAG 1920
consensus_4656#1 ATCCTTAATCTGATGTCAATTTGAGTACGGGAGGCTCTCTTTCCTTGCTACTAGTTTCAG 530
************************************************************
consensus_4656#0 ATTGGCTACATCTGCACCGTAAACAGACAGATTTGTACTATATAAAAGTTAATTT----- 1975
consensus_4656#1 ATTGGCTACATCTGCACCGTAAACAGACAGATTTGTACTATATAAAAGTTAATTTATTTT 590
*******************************************************
consensus_4656#0 ------------
consensus_4656#1 AGAACAGAGAGG 602
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||