cluster # 4661

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Oryza sativa
cluster # 4661 cluster # 4661 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4661#0 length = 1094 sequences # 2

consensus_4661#1 length = 82 sequences # 1

consensusID : consensus_4661#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1094
fasta sequence

                              [CCATTTCCATTCCCCCCACCACCGCGCAGCGGCGCAGGCAGCGATGGTGACCAACGCTCGCCGCCGCCGCCGCCTCAGGTGAGCACGACGCCCCGCGCGCGTCCCCGCACCCTGGAAGGAAGAGCAGCAGAAGACGACTCCGACGCCCACGCCCGCCATGGATCCGGCGTCCGAGGAGCTCGAGCAGCGCAGCCGCTACCTCAGCTCGCTCATCCGCCGCACCAAGCTCCACGCCGCGCCGGCGCTCGCCCCGCCCCCGCCCACGCCTCCCCCGGAGCCCGAGACGAAGCTGCAGCTGGAGATGGAGCCGCAGCCGGAGCGAGTCGAGGAGGCCGCCAAGAAGCCGGCGGCGGTGGCCGCCGTGGTGGAGAAGAGGGAGGTCAAGGGAGGGGGTGGCGGTGGCGGCCAAGCTGGGAAGGGGAAGGGGAAGGAGAAGGAGATGGAGAAGGGGAAGGAGGAGAGGAAGGTGTCGGTCCGGGTGCGCGCGGCCGACATGCCGCTGGCGATGCAGCGGCGCGCGGTCCGCCTCGCCTTCGACGCCGTCGCCGCCATGCCGCGGCTCGACAGCAAGCGCCTCGCCCTCGCCCTCAAGAAGGAATTCGACGCAACATATGGTCCTGCTTGGCACTGCATTGTTGGTACAGGCTTTGGTTCCTATGTCACCCACTCTGTGGGAGGCTTCTTGTACTTCTCCGTCGACAAGGTCTACGTTCTTCTCTTCAGAACCGCTGTCGAGCCATTAGGCCATCCACAATGAGATCAAAAATCGATTCATTACAAGGTAAAAAATTGCTGTGTATTATATGTATCTGACGTCC-AAGAGCCGTA-GAATGTTAA-GGTGAGTAGAACAATCGTGGCTCTCCATGGAAATTAATCTGCAGCCGATGTAAACATTTGGCATCCAATCCATGAACTCTGGAAGCTTTTAGTTGAGTCACTTCTCCAGCATGAAGAAAACTAGCTTTTGCTTCCGACCGTGCCTTGTATGTTGTATCTGGTTCTTATTGATCAGAGCTAGAAAACCTGAGCTGCGAGTTGTGGTACCTGAAAAATCAGGGAAATATAGCGAGTCTGATGATGCTTCCCATTTGGAC]

[+] EMBL AK103053             [CCATTTCCATTCCCCCCACCACCGCGCAGCGGCGCAGGCAGCGATGGTGACCAACGCTCGCCGCCGCCGCCGCCTCAGGTGAGCACGACGCCCCGCGCGCGTCCCCGCACCCTGGAAGGAAGAGCAGCAGAAGACGACTCCGACGCCCACGCCCGCCATGGATCCGGCGTCCGAGGAGCTCGAGCAGCGCAGCCGCTACCTCAGCTCGCTCATCCGCCGCACCAAGCTCCACGCCGCGCCGGCGCTCGCCCCGCCCCCGCCCACGCCTCCCCCGGAGCCCGAGACGAAGCTGCAGCTGGAGATGGAGCCGCAGCCGGAGCGAGTCGAGGAGGCCGCCAAGAAGCCGGCGGCGGTGGCCGCCGTGGTGGAGAAGAGGGAGGTCAAGGGAGGGGGTGGCGGTGGCGGCCAAGCTGGGAAGGGGAAGGGGAAGGAGAAGGAGATGGAGAAGGGGAAGGAGGAGAGGAAGGTGTCGGTCCGGGTGCGCGCGGCCGACATGCCGCTGGCGATGCAGCGGCGCGCGGTCCGCCTCGCCTTCGACGCCGTCGCCGCCATGCCGCGGCTCGACAGCAAGCGCCTCGCCCTCGCCCTCAAGAAGGAATTCGACGCAACATATGGTCCTGCTTGGCACTGCATTGTTGGTACAGGCTTTGGTTCCTATGTCACCCACTCTGTGGGAGGCTTCTTGTACTTCTCCGTCGACAAGGTCTACGTTCTTCTCTTCAGAACCGCTGTCGAGCCATTAGGCCATCCACAATGAGATCAAAAATCGATTCATTACAAGGTAAAAAATTGCTGTGTATTATATGTATCTGACGTCC AAGAGCCGTA GAATGTTAA GGTGAGTAGAACAATCGTGGCTCTCCATGGAAATTAATCTGCAGCCGATGTAAACATTTGGCATCCAATCCATGAACTCTGGAAGCTTTTAGTTGAGTCACTTCTCCAGCATGAAGAAAACTAGCTTTTGCTTCCGACCGTGCCTTGTATGTTGTATCTGGTTCTTATTGATCAGAGCTAGAAAACCTGAGCTGCGAGTTGTGGTACCTGAAAAATCAGGGAAATATAGCGAGTCTGATGATGCTTCCCATTTGGAC]
[+] EMBL OS1668A              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCCGCTGGCGATGCAGCGGCGCGCGGTCCGCCTCGCCTTCGACGCCGTCGCCGCCATGCCGCGGCTCGACAGCAAGCGCCTCGCCCTCGCCCTCAAGAAGGAATTCGACGCAACATATGGTCCTGCTTGGCACTGCATTGTTGGTACAGGCTTTGGTTCCTATGTCACCCACTCTGTGGGAGGCTTCTTGTACTTCTCCGTCGNCAAGGTCTACGTTCTTCTCTTCAGAACCGCTGTCGAGCCATTAGGCCATCCACAATGAGATCAAAAATCGATTCATTACAAGGTAAAAAATTGCTGTGTATTATATGTATCTNACGTCCAAAGAGCCGTAGGAATGTTAAGGGTGNGTAGAcc                                                                                                                                                                                                                                                     ]




>consensus_4661#0
CCATTTCCATTCCCCCCACCACCGCGCAGCGGCGCAGGCAGCGATGGTGACCAACGCTCG
CCGCCGCCGCCGCCTCAGGTGAGCACGACGCCCCGCGCGCGTCCCCGCACCCTGGAAGGA
AGAGCAGCAGAAGACGACTCCGACGCCCACGCCCGCCATGGATCCGGCGTCCGAGGAGCT
CGAGCAGCGCAGCCGCTACCTCAGCTCGCTCATCCGCCGCACCAAGCTCCACGCCGCGCC
GGCGCTCGCCCCGCCCCCGCCCACGCCTCCCCCGGAGCCCGAGACGAAGCTGCAGCTGGA
GATGGAGCCGCAGCCGGAGCGAGTCGAGGAGGCCGCCAAGAAGCCGGCGGCGGTGGCCGC
CGTGGTGGAGAAGAGGGAGGTCAAGGGAGGGGGTGGCGGTGGCGGCCAAGCTGGGAAGGG
GAAGGGGAAGGAGAAGGAGATGGAGAAGGGGAAGGAGGAGAGGAAGGTGTCGGTCCGGGT
GCGCGCGGCCGACATGCCGCTGGCGATGCAGCGGCGCGCGGTCCGCCTCGCCTTCGACGC
CGTCGCCGCCATGCCGCGGCTCGACAGCAAGCGCCTCGCCCTCGCCCTCAAGAAGGAATT
CGACGCAACATATGGTCCTGCTTGGCACTGCATTGTTGGTACAGGCTTTGGTTCCTATGT
CACCCACTCTGTGGGAGGCTTCTTGTACTTCTCCGTCGACAAGGTCTACGTTCTTCTCTT
CAGAACCGCTGTCGAGCCATTAGGCCATCCACAATGAGATCAAAAATCGATTCATTACAA
GGTAAAAAATTGCTGTGTATTATATGTATCTGACGTCCAAGAGCCGTAGAATGTTAAGGT
GAGTAGAACAATCGTGGCTCTCCATGGAAATTAATCTGCAGCCGATGTAAACATTTGGCA
TCCAATCCATGAACTCTGGAAGCTTTTAGTTGAGTCACTTCTCCAGCATGAAGAAAACTA
GCTTTTGCTTCCGACCGTGCCTTGTATGTTGTATCTGGTTCTTATTGATCAGAGCTAGAA
AACCTGAGCTGCGAGTTGTGGTACCTGAAAAATCAGGGAAATATAGCGAGTCTGATGATG
CTTCCCATTTGGAC

consensusID : consensus_4661#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 82
fasta sequence

                              [TCTGCAGCCGATGTAAACATTTGGCATCCAATCCATGAACTCTGGAAGCTTTAAGTTGAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF327657             [TCTGCAGCCGATGTAAACATTTGGCATCCAATCCATGAACTCTGGAAGCTTTAAGTTGAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4661#1
TCTGCAGCCGATGTAAACATTTGGCATCCAATCCATGAACTCTGGAAGCTTTAAGTTGAA
AAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4661#0      CCATTTCCATTCCCCCCACCACCGCGCAGCGGCGCAGGCAGCGATGGTGACCAACGCTCG 60
consensus_4661#1      ------------------------------------------------------------
                                                                                  

consensus_4661#0      CCGCCGCCGCCGCCTCAGGTGAGCACGACGCCCCGCGCGCGTCCCCGCACCCTGGAAGGA 120
consensus_4661#1      ------------------------------------------------------------
                                                                                  

consensus_4661#0      AGAGCAGCAGAAGACGACTCCGACGCCCACGCCCGCCATGGATCCGGCGTCCGAGGAGCT 180
consensus_4661#1      ------------------------------------------------------------
                                                                                  

consensus_4661#0      CGAGCAGCGCAGCCGCTACCTCAGCTCGCTCATCCGCCGCACCAAGCTCCACGCCGCGCC 240
consensus_4661#1      ------------------------------------------------------------
                                                                                  

consensus_4661#0      GGCGCTCGCCCCGCCCCCGCCCACGCCTCCCCCGGAGCCCGAGACGAAGCTGCAGCTGGA 300
consensus_4661#1      ------------------------------------------------------------
                                                                                  

consensus_4661#0      GATGGAGCCGCAGCCGGAGCGAGTCGAGGAGGCCGCCAAGAAGCCGGCGGCGGTGGCCGC 360
consensus_4661#1      ------------------------------------------------------------
                                                                                  

consensus_4661#0      CGTGGTGGAGAAGAGGGAGGTCAAGGGAGGGGGTGGCGGTGGCGGCCAAGCTGGGAAGGG 420
consensus_4661#1      ------------------------------------------------------------
                                                                                  

consensus_4661#0      GAAGGGGAAGGAGAAGGAGATGGAGAAGGGGAAGGAGGAGAGGAAGGTGTCGGTCCGGGT 480
consensus_4661#1      ------------------------------------------------------------
                                                                                  

consensus_4661#0      GCGCGCGGCCGACATGCCGCTGGCGATGCAGCGGCGCGCGGTCCGCCTCGCCTTCGACGC 540
consensus_4661#1      ------------------------------------------------------------
                                                                                  

consensus_4661#0      CGTCGCCGCCATGCCGCGGCTCGACAGCAAGCGCCTCGCCCTCGCCCTCAAGAAGGAATT 600
consensus_4661#1      ------------------------------------------------------------
                                                                                  

consensus_4661#0      CGACGCAACATATGGTCCTGCTTGGCACTGCATTGTTGGTACAGGCTTTGGTTCCTATGT 660
consensus_4661#1      ------------------------------------------------------------
                                                                                  

consensus_4661#0      CACCCACTCTGTGGGAGGCTTCTTGTACTTCTCCGTCGACAAGGTCTACGTTCTTCTCTT 720
consensus_4661#1      ------------------------------------------------------------
                                                                                  

consensus_4661#0      CAGAACCGCTGTCGAGCCATTAGGCCATCCACAATGAGATCAAAAATCGATTCATTACAA 780
consensus_4661#1      ------------------------------------------------------------
                                                                                  

consensus_4661#0      GGTAAAAAATTGCTGTGTATTATATGTATCTGACGTCCAAGAGCCGTAGAATGTTAAGGT 840
consensus_4661#1      ------------------------------------------------------------
                                                                                  

consensus_4661#0      GAGTAGAACAATCGTGGCTCTCCATGGAAATTAATCTGCAGCCGATGTAAACATTTGGCA 900
consensus_4661#1      ----------------------------------TCTGCAGCCGATGTAAACATTTGGCA 26
                                                        **************************

consensus_4661#0      TCCAATCCATGAACTCTGGAAGCTTTTAGTTGAGTCACTTCTCCAGCATGAAGAAAACTA 960
consensus_4661#1      TCCAATCCATGAACTCTGGAAGCTTTAAGTTGAAAAAAAAAAAAAAAAAAAAAAAA---- 82
                      ************************** ******   *       *  *  ** ***    

consensus_4661#0      GCTTTTGCTTCCGACCGTGCCTTGTATGTTGTATCTGGTTCTTATTGATCAGAGCTAGAA 1020
consensus_4661#1      ------------------------------------------------------------
                                                                                  

consensus_4661#0      AACCTGAGCTGCGAGTTGTGGTACCTGAAAAATCAGGGAAATATAGCGAGTCTGATGATG 1080
consensus_4661#1      ------------------------------------------------------------
                                                                                  

consensus_4661#0      CTTCCCATTTGGAC 1094
consensus_4661#1      --------------