|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4669#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 782 fasta sequence
[CACCCCACCCGCACCGTCGTCGGCCTCAACGCCATCGCCCGCAAGCGCTGGGTCACCGTCATGGTGGCCGTCGAACACGGAGAAGAACGGCGTGCTGGCCGTGCAGACGCTGCGGAACAACATCATGGCGTCGACGGTGCTTGCCACGACGGCCATCACGCTCGTCTCCGTCATCAGCGTCTTCCTCGGCGCCACGGCGGGAAGGTCCCCGGCGTCCCCCTCGTCGTCGTCGTCGGGGGCGCCGCTGCTGGTATACGGGAGCAAGACCGGGGAGGTGTTCGCGGTCAAGTACCTGGCCATCTCGCTCTGCTTCATGCTCGCCTTCGTCTGCAACGTGCAGGCCATCCGCCTGTACGCGCACGCCAGCTTCCTCCTCGGCCTGCCGCCCGTCGCCGGCGAGGGGGAGGGGGAGGCGGCGGCGGCGGCGGCGGTAGCGCGGGAGGAGTTCGCGGCGTACGTGGCGCGGACGGTGAACAGGGGGAGCCACTCCTGGTCGCTGGGACTCCGCGCCTTCTACGCGTCGCTGGCGCTCTTCATGTGGACGTTCGGGCCCATCCCGATGCTGGCGTGCAGCGTGCTCATGTGCGGACTGCTCTACTTCCTCGACACCACCAGGGAGCGCGCCGCCGCCGTGGCCGGGATCCACCACGGTCACAAGGATAGCACCGTGTAGCAGCACTAGTAGTAAGTAGTAACCAGTTTCTCGATGGCATGGATGTACATCTATTGATCTATAGACCCATCAATTGTTTTGCTTGAGTAATGAACTCAGTCACAGGAGA]
[+] EMBL AK103030 [CACCCCACCCGCACCGTCGTCGGCCTCAACGCCATCGCCCGCAAGCGCTGGGTCACCGTCATGGTGGCCGTCGAACACGGAGAAGAACGGCGTGCTGGCCGTGCAGACGCTGCGGAACAACATCATGGCGTCGACGGTGCTTGCCACGACGGCCATCACGCTCGTCTCCGTCATCAGCGTCTTCCTCGGCGCCACGGCGGGAAGGTCCCCGGCGTCCCCCTCGTCGTCGTCGTCGGGGGCGCCGCTGCTGGTATACGGGAGCAAGACCGGGGAGGTGTTCGCGGTCAAGTACCTGGCCATCTCGCTCTGCTTCATGCTCGCCTTCGTCTGCAACGTGCAGGCCATCCGCCTGTACGCGCACGCCAGCTTCCTCCTCGGCCTGCCGCCCGTCGCCGGCGAGGGGGAGGGGGAGGCGGCGGCGGCGGCGGCGGTAGCGCGGGAGGAGTTCGCGGCGTACGTGGCGCGGACGGTGAACAGGGGGAGCCACTCCTGGTCGCTGGGACTCCGCGCCTTCTACGCGTCGCTGGCGCTCTTCATGTGGACGTTCGGGCCCATCCCGATGCTGGCGTGCAGCGTGCTCATGTGCGGACTGCTCTACTTCCTCGACACCACCAGGGAGCGCGCCGCCGCCGTGGCCGGGATCCACCACGGTCACAAGGATAGCACCGTGTAGCAGCACTAGTAGTAAGTAGTAACCAGTTTCTCGATGGCATGGATGTACATCTATTGATCTATAGACCCATCAATTGTTTTGCTTGAGTAATGAACTCAGTCACAGGAGA]
consensusID : consensus_4669#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 609 fasta sequence
[CACCCCACCCGCACCGTCGTCGGCCTCAACGCCATCGCCCGCAAGCGCTGGGTCACCGTCATGATGGCCGTCGGTACCAATTGATTCTCTTCTTCTTGTCATCTCTCTCTAGAGATTCTAGAATTGTCAGCCTGTCTGTCGTACGTTCTTGTGGGCGCAGAACACGGAGAAGAACGGCGTGCTGGCCGTGCAGACGCTGCGGAACAACATCATGGCGTCGACGGTGCTTGCCACGACGGCCATCACGCTCGTCTCCGTCATCAGCGTCTTCCTCGGCGCCACGGCGGGAAGGTCCCCGGCGTCCCCCTCGTCGTCGTCGTCGGGGGCGCCGCTGCTGGTGTACGGGAGCAAGACCGGGGAGGTGTTCGCGGTCAAGTACCTGGCCATCTCGCTCTGCTTCATGCTCGCCTTCGTCTGCAGCGTGCTCATGTGCGGACTGCTCTACTTCCTCGACACCACCAGGGAGCGCGCCGCCGCCGTGGCCGGGATCCACCACGGTCACAANGGATAGCGCCGTGTAGCAGCACTAGTAGTAAGTAGTAACCAGTTTCTCGATGGCATGGATGTACATCTATTGATCTATAGACCCATCAATTGTTTTTGCTTGAG]
[+] EMBL CB096569 [CACCCCACCCGCACCGTCGTCGGCCTCAACGCCATCGCCCGCAAGCGCTGGGTCACCGTCATGATGGCCGTCGGTACCAATTGATTCTCTTCTTCTTGTCATCTCTCTCTAGAGATTCTAGAATTGTCAGCCTGTCTGTCGTACGTTCTTGTGGGCGCAGAACACGGAGAAGAACGGCGTGCTGGCCGTGCAGACGCTGCGGAACAACATCATGGCGTCGACGGTGCTTGCCACGACGGCCATCACGCTCGTCTCCGTCATCAGCGTCTTCCTCGGCGCCACGGCGGGAAGGTCCCCGGCGTCCCCCTCGTCGTCGTCGTCGGGGGCGCCGCTGCTGGTGTACGGGAGCAAGACCGGGGAGGTGTTCGCGGTCAAGTACCTGGCCATCTCGCTCTGCTTCATGCTCGCCTTCGTCTGCAGCGTGCTCATGTGCGGACTGCTCTACTTCCTCGACACCACCAGGGAGCGCGCCGCCGCCGTGGCCGGGATCCACCACGGTCACAANGGATAGCGCCGTGTAGCAGCACTAGTAGTAAGTAGTAACCAGTTTCTCGATGGCATGGATGTACATCTATTGATCTATAGACCCATCAATTGTTTTTGCTTGAG]
[+] EMBL CA764895 [CACCCCACCCGCACCGTCGTCGGCCTCAACGCCATCGCCCGCAAGCGCTGGGTCACCGTCATGATGGCCGTCGGTACCAATTGATTCTCTTCTTCTTGTCATCTCTCTCTAGAGATTCTAGAATTGTCAGCCTGTCTGTCGTACGTTCTTGTGGGCGCAGAACACGGAGAAGAACGGCGTGCTGGCCGTGCAGACGCTGCGGAACAACATCATGGCGTCGACGGTGCTTGCCACGACGGCCATCACGCTCGTCTCCGTCATCAGCGTCTTCCTCGGCGCCACGGCGGGAAGGTCCCCGGCGTCCCCCTCGTCGTCGTCGTCGGGGGCGCCGCTGCTGGTGTACGGGAGCAAGACCGGGGAGGTGTTCGCGGTCAAGTACCTGGCCATCTCGCTCTGCTTCATGCTCGCCTTCGTCTGCAGCGTGCTCATGTGCGGACTGCTCTACTTCCTCGACACCACCAGGGAGCGCGCCGCCGCCGTGGCCGGGATCCACCACGGTCACAA GGATAGCGCCGTGTAGCAGCACTAGTAGTAAGTAGTAACCAGTTTCTCGATGGCATGGATGTACATCTATTGATCTATAGACCCATCAATTGTTTTgc ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4669#0 CACCCCACCCGCACCGTCGTCGGCCTCAACGCCATCGCCCGCAAGCGCTGGGTCACCGTC 60
consensus_4669#1 CACCCCACCCGCACCGTCGTCGGCCTCAACGCCATCGCCCGCAAGCGCTGGGTCACCGTC 60
************************************************************
consensus_4669#0 ATGGTGGCCGTCGAACACGGAGAAGAACGGCGTGCTGGCCGTGCAGACGCTGCGGAACAA 120
consensus_4669#1 ATGATGGCCGTCG------------------GTACCAATTG---ATTCTCTTCTTCTTGT 99
*** ********* ** * * * * ** *
consensus_4669#0 CATCATGGCGTCGACGGTGCTTGCCACGACGGCCATCACGCTCGTCTCCGTCATCAGCGT 180
consensus_4669#1 CATCTC----TCTCTAGAGATT-CTAGAATTGTCA----GCCTGTCT--GTCGT--ACGT 146
**** ** * * ** * * * * ** ** **** *** * ***
consensus_4669#0 CTTCCTCGGCGCCACGGCGGGAAGGTCCCCGGCGTCCCCCTCGTCGTCGTCGTCGGGGGC 240
consensus_4669#1 TCTTGTGGGCGC-AGAACACGGAGAAGAACGGCGTGCTGGCCGT----------GCAGAC 195
* * ***** * * * ** ****** * *** * * *
consensus_4669#0 GCCGCTGCTGGTATACGGGAGCAAGACCGGGGAGGTGTTCGCGGTCAAGTACCTGGCCAT 300
consensus_4669#1 GCTGC------------GGAACAACATCATG---GCGTCGACGGTG------CTTGCCAC 234
** ** *** *** * * * * ** **** ** ****
consensus_4669#0 CTCGCTCTGCTTCATGCTCGCCTTCGTCTGCAACGTGCAGGCCATCCGCCTGTACGCGCA 360
consensus_4669#1 GACGGCCA---TCACGCTCGTCTCCGTCATCAGCGT---------CTTCCTCGGCGC-CA 281
** * *** ***** ** **** ** *** * *** *** **
consensus_4669#0 CGCCAGCTTCCTCCTCGGCCTGCCGCCCGTCGCCGGCGAGGGGGAGGGGGAGGCGGCGGC 420
consensus_4669#1 CGGCGGGAAGGTCCCCGGCGTCCCCCTCGTCGTCGTCGT--------------CGGGGGC 327
** * * *** **** * ** * ***** ** ** *** ***
consensus_4669#0 GGCGGCGGCGGTAGCGCGGGAGGAGTTCGCGGCGTACGTGGCGCGGACGGTGAACAGGGG 480
consensus_4669#1 GCCGCTGCTGGT-GTACGGGAGCAA--------------------GAC--------CGGG 358
* ** * *** * ****** * *** ***
consensus_4669#0 GAGCCACTCCTGGTCGCTGGGACTCCGCGCCTTCTACGCGTCGCTGGCGCTCTTCATGTG 540
consensus_4669#1 GAGGTGTTCGCGGTCA----AGTACCTGGCCATCT------------CGCTCTGC----- 397
*** ** **** ** *** *** ****** *
consensus_4669#0 GACGTTCGGGCCCATCCCGATGCTGGCGTGCAGCGTGCTCATGTGCGGACTGCTCTACTT 600
consensus_4669#1 ----TTCATGCTCGCC------TTCGTCTGCAGCGTGCTCATGTGCGGACTGCTCTACTT 447
*** ** * * * * ********************************
consensus_4669#0 CCTCGACACCACCAGGGAGCGCGCCGCCGCCGTGGCCGGGATCCACCACGGTCACAAGG- 659
consensus_4669#1 CCTCGACACCACCAGGGAGCGCGCCGCCGCCGTGGCCGGGATCCACCACGGTCACAANGG 507
********************************************************* *
consensus_4669#0 ATAGCACCGTGTAGCAGCACTAGTAGTAAGTAGTAACCAGTTTCTCGATGGCATGGATGT 719
consensus_4669#1 ATAGCGCCGTGTAGCAGCACTAGTAGTAAGTAGTAACCAGTTTCTCGATGGCATGGATGT 567
***** ******************************************************
consensus_4669#0 ACATCTATTGATCTATAGACCCATCAATTGTTTT-GCTTGAGTAATGAACTCAGTCACAG 778
consensus_4669#1 ACATCTATTGATCTATAGACCCATCAATTGTTTTTGCTTGAG------------------ 609
********************************** *******
consensus_4669#0 GAGA 782
consensus_4669#1 ----
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||