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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4670#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2059 fasta sequence
[CCCGCACCTTCCCTTCCCCTGGCCACACCTGCCGCTCCAGATCTGCGCCTCCGCCTCCCCCACGTCACGACGCCGCCGCCGCCGCCGCCGCACGCGCGGCCGTCGCGTCGCTAGCTAACCTCCCCTTCTAGAGCCTTCTAGACGCTTCTCCCGATGCGGAAGAAGCCGGCGAGGGCAGTGCCGGAGTGGCTCAACAGCCCGCTCTGGTCGGCCCCGCCGCCTTCGTCTTCGTCGCCGTCGCCGCCCGTGCCCCCCGACCCCTACGGCGCCGACCTCTCCCCGCCCCCGCCTCCTCCGCCCAAGCCGCCGCCGACCGTCCCGCCCCCGTCGTACGAGCAGGCGGTGGGGTCGTCGAGGAGGGCGAGGAGCGAGGCGGGGTGGGAGGAGGAGGAGGAGGAGGATGGGGAGGTCGGGGGTGGGGCCGCGCTCCGGGCGCACCTGCTCGCCGACTTCAAGCTCGCGCTGTCGAAGAAGGTGGTGAACATGGGGGAGCTGCGGAGGCTCGCCTGCCTCGGCGTGCCGGACGGCGGCGCCGCCGTCCGCCCGCTCGTCTGGAAGTGTGCAGCTTCTGTTGGGATATCTGCCAACTGAGCGTGCTTTTTGGCCTCATGAGCTAGAAAAGAAGCGGAGCCAGTATAGTGCATATAAAGATGAATTTCTCCTAAATCCTTCAGAAAAAATACGGAGATTTGAGGAGTCAAAGTTGCTAAGAAAGAAAGAATTAAATAGTGACAAAATTGGCCTTCTACCAAGAGCCAAAGTTACTAATGAAGAGCACCCTTTGAGCTTTGGTAAATCTAGCTTGTGGAATCAATACTTCCAGGAATCAGAAATTCTGGAACAGATAGATCGAGATGTGAAAAGAACACATCCTGAAATGCCGTTTTTCTCTGCCAAGGCTAACCAGGAATCTCTAAGGCGTGTTCTCATTATCTTCTCAAAATTAAATCCTACCATAAGATATGTGCAAGGGATGAATGAAGTTTTGGCACCTCTTTTTTATGTGTTCAAGAATGACCCTGATACAAGCAATTCAGCCTCAGCTGAAGCAGACACTTTCTTTTGCTTTGTTGAATTGCTCAGTGGCTTTAAAGACAACTACTGTAAGCATCTTGACAACAGCCAAGTGGGTATTCGGTCTACACTTTCAAAGTTGTCTCAGCTCTTGAAGAGACATGATGAAGAGCTATGGCGACATATGGAGATCACTACAAAGGTATATCCACAATACTATGCATTTAGATGGATCACACTACTGTTGACAATGGAGTTCAGCTTCAATGTGTGTATTCACATTTGGGATGCTATCTTGGGTGATCCAGAAGGTCCTCCGGACACGTTGCTAAGAATATGCTGTGCCATGCTCATCCTTGTCCGGAGGCGCCTCCTAGCTGGAGACTTCACTGCCAACATCCAGCTGCTGCAGCACTATCCACCGACTAACATCGACCACCTTCTTCACATTGCTAACCGACTAAGAGGAAGCGTAGCCAGCTAGCGATACATTCTCATTTTCTGCATATCTGTACCTCGATCTTGTCTTTGTGGTGGCGTTCATCTGATCATATTGTGAACTTGGCAATGTAGGTAGCTGTGTTTATCCCATTTTGGTGTGGGTGTGGCTGGCAATGTGGTTGTAGAAGAGAGCGTTGAGGCCCTAGATGCATTTCTTGTTGTGTTTACATTAGAAACATCTCCCCTATGTGGAAAAAGCATCAGTTTTACATGTTCCGTATGAAAAATGTTGTGTTGGATGTGTTACTTGGTAGACTATACAGATGAGGGAGGACTTAGGACTAGTAGGAAAGAGCTATGGTTAGGCCACCTCATAAACAAATCAATAGTTTTCAGAGTTTTAGCCATTAGTTATAGCTGTCAATGTTTGGATAAAATTCCTACTTCCTCAGTTTTCTTGGCCTCTGTCGCATTTGTAACTGAAATTCGTACTGTAAACATTGAAAAAAAAATCGAGGTAAAATTTGTAGGTTTGGCTCGAGTTTCTTTGAAATTCGTGTTTGTATTAACTCTTTACTTGAAAGGAAATGCTAATATGACTATG]
[+] EMBL AK099761 [CCCGCACCTTCCCTTCCCCTGGCCACACCTGCCGCTCCAGATCTGCGCCTCCGCCTCCCCCACGTCACGACGCCGCCGCCGCCGCCGCCGCACGCGCGGCCGTCGCGTCGCTAGCTAACCTCCCCTTCTAGAGCCTTCTAGACGCTTCTCCCGATGCGGAAGAAGCCGGCGAGGGCAGTGCCGGAGTGGCTCAACAGCCCGCTCTGGTCGGCCCCGCCGCCTTCGTCTTCGTCGCCGTCGCCGCCCGTGCCCCCCGACCCCTACGGCGCCGACCTCTCCCCGCCCCCGCCTCCTCCGCCCAAGCCGCCGCCGACCGTCCCGCCCCCGTCGTACGAGCAGGCGGTGGGGTCGTCGAGGAGGGCGAGGAGCGAGGCGGGGTGGGAGGAGGAGGAGGAGGAGGATGGGGAGGTCGGGGGTGGGGCCGCGCTCCGGGCGCACCTGCTCGCCGACTTCAAGCTCGCGCTGTCGAAGAAGGTGGTGAACATGGGGGAGCTGCGGAGGCTCGCCTGCCTCGGCGTGCCGGACGGCGGCGCCGCCGTCCGCCCGCTCGTCTGGAAGTGTGCAGCTTCTGTTGGGATATCTGCCAACTGAGCGTGCTTTTTGGCCTCATGAGCTAGAAAAGAAGCGGAGCCAGTATAGTGCATATAAAGATGAATTTCTCCTAAATCCTTCAGAAAAAATACGGAGATTTGAGGAGTCAAAGTTGCTAAGAAAGAAAGAATTAAATAGTGACAAAATTGGCCTTCTACCAAGAGCCAAAGTTACTAATGAAGAGCACCCTTTGAGCTTTGGTAAATCTAGCTTGTGGAATCAATACTTCCAGGAATCAGAAATTCTGGAACAGATAGATCGAGATGTGAAAAGAACACATCCTGAAATGCCGTTTTTCTCTGCCAAGGCTAACCAGGAATCTCTAAGGCGTGTTCTCATTATCTTCTCAAAATTAAATCCTACCATAAGATATGTGCAAGGGATGAATGAAGTTTTGGCACCTCTTTTTTATGTGTTCAAGAATGACCCTGATACAAGCAATTCAGCCTCAGCTGAAGCAGACACTTTCTTTTGCTTTGTTGAATTGCTCAGTGGCTTTAAAGACAACTACTGTAAGCATCTTGACAACAGCCAAGTGGGTATTCGGTCTACACTTTCAAAGTTGTCTCAGCTCTTGAAGAGACATGATGAAGAGCTATGGCGACATATGGAGATCACTACAAAGGTATATCCACAATACTATGCATTTAGATGGATCACACTACTGTTGACAATGGAGTTCAGCTTCAATGTGTGTATTCACATTTGGGATGCTATCTTGGGTGATCCAGAAGGTCCTCCGGACACGTTGCTAAGAATATGCTGTGCCATGCTCATCCTTGTCCGGAGGCGCCTCCTAGCTGGAGACTTCACTGCCAACATCCAGCTGCTGCAGCACTATCCACCGACTAACATCGACCACCTTCTTCACATTGCTAACCGACTAAGAGGAAGCGTAGCCAGCTAGCGATACATTCTCATTTTCTGCATATCTGTACCTCGATCTTGTCTTTGTGGTGGCGTTCATCTGATCATATTGTGAACTTGGCAATGTAGGTAGCTGTGTTTATCCCATTTTGGTGTGGGTGTGGCTGGCAATGTGGTTGTAGAAGAGAGCGTTGAGGCCCTAGATGCATTTCTTGTTGTGTTTACATTAGAAACATCTCCCCTATGTGGAAAAAGCATCAGTTTTACATGTTCCGTATGAAAAATGTTGTGTTGGATGTGTTACTTGGTAGACTATACAGATGAGGGAGGACTTAGGACTAGTAGGAAAGAGCTATGGTTAGGCCACCTCATAAACAAATCAATAGTTTTCAGAGTTTTAGCCATTAGTTATAGCTGTCAATGTTTGGATAAAATTCCTACTTCCTCAGTTTTCTTGGCCTCTGTCGCATTTGTAACTGAAATTCGTACTGTAAACATTGAAAAAAAAATCGAGGTAAAATTTGTAGGTTTGGCTCGAGTTTCTTTGAAATTCGTGTTTGTATTAACTCTTTACTTGAAAGGAAATGCTAATATGACTATG]
[+] EMBL C28883 [ CTTGGCAATGTAGGTAGCTGTGTTTATCCCATTTTGGTNAGGGTGTGGCTGGCAATGTGGTTGTAGAAGAGAGCGTTGAGGCCCTAGATGCATTTNTNGTTGTGTTTACATTAGAAACATCTCCCCTATGTGGAAAAAGCATCAGTTTTACATGTNCCGTATGAAAAATGTTGTGTTGGATGTGTTACTTGGTAGACTATACAGATGAGGGAGGACTTAGGACTAGTAGGAAAGAGCTATGGTTAGGNCACCTCATAAACAAATCAATAGTTTTCAGAGTTTTAGCCATTAGTTATAGCTGTCAn ]
consensusID : consensus_4670#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[GCTGAAGCAGACACTTTCTTTTGCTTTGTTGAATTGCTCAGTGGCTTTAAAGACACCTACTGTAAGCATCTTGACAACAGCCAAGTGGGTATTCGGTGTACACTTTCAAAGTTGTCTCAGCTCTTGAAGAGACATGATGAAGAGCTATGGCGACATACGGAGATCACTACAAAGGTATATCCACAATACTATGCATTTAGATGGATCACACTACTGTTGACAATGGAGTTCAGCTTCAATGTGTGTATTCACATTTGGGATGCTATCTTGGGTGATCCAGAAGGTCCTCCGGACACGTTGCTAAGAATATGCTGTGCCATGCTCATCCTTGTCCGGAGGCGCCTCCTAGCTGGAGACTTCACTGCCAACATCCAGCTGGTGCAGCACTATCCACCGACTAACATCGACCACCTTCTTCACATTGCTAACCGACTAAGAGGAAGCGTAGCCAGCTAGCGATACATTCTCATTTTCTGCATATCTGTACCTCGATCTTGTCTTTGTGGTGGCGTTCATCTGATCATATTGTGAACTTGGCAATGTAGGTAGCTGTGTTTATCCCATTTTGGTGTGGGTATGGCTGGCAATGTGGTTGTAGAAGAGAGCGTTGAGGCCCTAGATGCATTTCTTGTTGTGTTTACATTAGAAACATCTCCCCTATGTGGAAAAAGCTTCAGTTTTACAAAAAAAAAAA]
[-] EMBL CA762007 [GCTGAAGCAGACACTTTCTTTTGCTTTGTTGAATTGCTCAGTGGCTTTAAAGACACCTACTGTAAGCATCTTGACAACAGCCAAGTGGGTATTCGGTGTACACTTTCAAAGTTGTCTCAGCTCTTGAAGAGACATGATGAAGAGCTATGGCGACATACGGAGATCACTACAAAGGTATATCCACAATACTATGCATTTAGATGGATCACACTACTGTTGACAATGGAGTTCAGCTTCAATGTGTGTATTCACATTTGGGATGCTATCTTGGGTGATCCAGAAGGTCCTCCGGACACGTTGCTAAGAATATGCTGTGCCATGCTCATCCTTGTCCGGAGGCGCCTCCTAGCTGGAGACTTCACTGCCAACATCCAGCTGGTGCAGCACTATCCACCGACTAACATCGACCACCTTCTTCACATTGCTAACCGACTAAGAGGAAGCGTAGCCAGCTAGCGATACATTCTCATTTTCTGCATATCTGTACCTCGATCTTGTCTTTGTGGTGGCGTTCATCTGATCATATTGTGAACTTGGCAATGTAGGTAGCTGTGTTTATCCCATTTTGGTGTGGGTATGGCTGGCAATGTGGTTGTAGAAGAGAGCGTTGAGGCCCTAGATGCATTTCTTGTTGTGTTTACATTAGAAACATCTCCCCTATGTGGAAAAAGCTTCAGTTTTACAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4670#0 CCCGCACCTTCCCTTCCCCTGGCCACACCTGCCGCTCCAGATCTGCGCCTCCGCCTCCCC 60
consensus_4670#1 ------------------------------------------------------------
consensus_4670#0 CACGTCACGACGCCGCCGCCGCCGCCGCCGCACGCGCGGCCGTCGCGTCGCTAGCTAACC 120
consensus_4670#1 ------------------------------------------------------------
consensus_4670#0 TCCCCTTCTAGAGCCTTCTAGACGCTTCTCCCGATGCGGAAGAAGCCGGCGAGGGCAGTG 180
consensus_4670#1 ------------------------------------------------------------
consensus_4670#0 CCGGAGTGGCTCAACAGCCCGCTCTGGTCGGCCCCGCCGCCTTCGTCTTCGTCGCCGTCG 240
consensus_4670#1 ------------------------------------------------------------
consensus_4670#0 CCGCCCGTGCCCCCCGACCCCTACGGCGCCGACCTCTCCCCGCCCCCGCCTCCTCCGCCC 300
consensus_4670#1 ------------------------------------------------------------
consensus_4670#0 AAGCCGCCGCCGACCGTCCCGCCCCCGTCGTACGAGCAGGCGGTGGGGTCGTCGAGGAGG 360
consensus_4670#1 ------------------------------------------------------------
consensus_4670#0 GCGAGGAGCGAGGCGGGGTGGGAGGAGGAGGAGGAGGAGGATGGGGAGGTCGGGGGTGGG 420
consensus_4670#1 ------------------------------------------------------------
consensus_4670#0 GCCGCGCTCCGGGCGCACCTGCTCGCCGACTTCAAGCTCGCGCTGTCGAAGAAGGTGGTG 480
consensus_4670#1 ------------------------------------------------------------
consensus_4670#0 AACATGGGGGAGCTGCGGAGGCTCGCCTGCCTCGGCGTGCCGGACGGCGGCGCCGCCGTC 540
consensus_4670#1 ------------------------------------------------------------
consensus_4670#0 CGCCCGCTCGTCTGGAAGTGTGCAGCTTCTGTTGGGATATCTGCCAACTGAGCGTGCTTT 600
consensus_4670#1 ------------------------------------------------------------
consensus_4670#0 TTGGCCTCATGAGCTAGAAAAGAAGCGGAGCCAGTATAGTGCATATAAAGATGAATTTCT 660
consensus_4670#1 ------------------------------------------------------------
consensus_4670#0 CCTAAATCCTTCAGAAAAAATACGGAGATTTGAGGAGTCAAAGTTGCTAAGAAAGAAAGA 720
consensus_4670#1 ------------------------------------------------------------
consensus_4670#0 ATTAAATAGTGACAAAATTGGCCTTCTACCAAGAGCCAAAGTTACTAATGAAGAGCACCC 780
consensus_4670#1 ------------------------------------------------------------
consensus_4670#0 TTTGAGCTTTGGTAAATCTAGCTTGTGGAATCAATACTTCCAGGAATCAGAAATTCTGGA 840
consensus_4670#1 ------------------------------------------------------------
consensus_4670#0 ACAGATAGATCGAGATGTGAAAAGAACACATCCTGAAATGCCGTTTTTCTCTGCCAAGGC 900
consensus_4670#1 ------------------------------------------------------------
consensus_4670#0 TAACCAGGAATCTCTAAGGCGTGTTCTCATTATCTTCTCAAAATTAAATCCTACCATAAG 960
consensus_4670#1 ------------------------------------------------------------
consensus_4670#0 ATATGTGCAAGGGATGAATGAAGTTTTGGCACCTCTTTTTTATGTGTTCAAGAATGACCC 1020
consensus_4670#1 ------------------------------------------------------------
consensus_4670#0 TGATACAAGCAATTCAGCCTCAGCTGAAGCAGACACTTTCTTTTGCTTTGTTGAATTGCT 1080
consensus_4670#1 ----------------------GCTGAAGCAGACACTTTCTTTTGCTTTGTTGAATTGCT 38
**************************************
consensus_4670#0 CAGTGGCTTTAAAGACAACTACTGTAAGCATCTTGACAACAGCCAAGTGGGTATTCGGTC 1140
consensus_4670#1 CAGTGGCTTTAAAGACACCTACTGTAAGCATCTTGACAACAGCCAAGTGGGTATTCGGTG 98
***************** *****************************************
consensus_4670#0 TACACTTTCAAAGTTGTCTCAGCTCTTGAAGAGACATGATGAAGAGCTATGGCGACATAT 1200
consensus_4670#1 TACACTTTCAAAGTTGTCTCAGCTCTTGAAGAGACATGATGAAGAGCTATGGCGACATAC 158
***********************************************************
consensus_4670#0 GGAGATCACTACAAAGGTATATCCACAATACTATGCATTTAGATGGATCACACTACTGTT 1260
consensus_4670#1 GGAGATCACTACAAAGGTATATCCACAATACTATGCATTTAGATGGATCACACTACTGTT 218
************************************************************
consensus_4670#0 GACAATGGAGTTCAGCTTCAATGTGTGTATTCACATTTGGGATGCTATCTTGGGTGATCC 1320
consensus_4670#1 GACAATGGAGTTCAGCTTCAATGTGTGTATTCACATTTGGGATGCTATCTTGGGTGATCC 278
************************************************************
consensus_4670#0 AGAAGGTCCTCCGGACACGTTGCTAAGAATATGCTGTGCCATGCTCATCCTTGTCCGGAG 1380
consensus_4670#1 AGAAGGTCCTCCGGACACGTTGCTAAGAATATGCTGTGCCATGCTCATCCTTGTCCGGAG 338
************************************************************
consensus_4670#0 GCGCCTCCTAGCTGGAGACTTCACTGCCAACATCCAGCTGCTGCAGCACTATCCACCGAC 1440
consensus_4670#1 GCGCCTCCTAGCTGGAGACTTCACTGCCAACATCCAGCTGGTGCAGCACTATCCACCGAC 398
**************************************** *******************
consensus_4670#0 TAACATCGACCACCTTCTTCACATTGCTAACCGACTAAGAGGAAGCGTAGCCAGCTAGCG 1500
consensus_4670#1 TAACATCGACCACCTTCTTCACATTGCTAACCGACTAAGAGGAAGCGTAGCCAGCTAGCG 458
************************************************************
consensus_4670#0 ATACATTCTCATTTTCTGCATATCTGTACCTCGATCTTGTCTTTGTGGTGGCGTTCATCT 1560
consensus_4670#1 ATACATTCTCATTTTCTGCATATCTGTACCTCGATCTTGTCTTTGTGGTGGCGTTCATCT 518
************************************************************
consensus_4670#0 GATCATATTGTGAACTTGGCAATGTAGGTAGCTGTGTTTATCCCATTTTGGTGTGGGTGT 1620
consensus_4670#1 GATCATATTGTGAACTTGGCAATGTAGGTAGCTGTGTTTATCCCATTTTGGTGTGGGTAT 578
********************************************************** *
consensus_4670#0 GGCTGGCAATGTGGTTGTAGAAGAGAGCGTTGAGGCCCTAGATGCATTTCTTGTTGTGTT 1680
consensus_4670#1 GGCTGGCAATGTGGTTGTAGAAGAGAGCGTTGAGGCCCTAGATGCATTTCTTGTTGTGTT 638
************************************************************
consensus_4670#0 TACATTAGAAACATCTCCCCTATGTGGAAAAAGCATCAGTTTTACATGTTCCGTATGAAA 1740
consensus_4670#1 TACATTAGAAACATCTCCCCTATGTGGAAAAAGCTTCAGTTTTACAAA------AAAAAA 692
********************************** *********** * ***
consensus_4670#0 AATGTTGTGTTGGATGTGTTACTTGGTAGACTATACAGATGAGGGAGGACTTAGGACTAG 1800
consensus_4670#1 AA---------------------------------------------------------- 694
**
consensus_4670#0 TAGGAAAGAGCTATGGTTAGGCCACCTCATAAACAAATCAATAGTTTTCAGAGTTTTAGC 1860
consensus_4670#1 ------------------------------------------------------------
consensus_4670#0 CATTAGTTATAGCTGTCAATGTTTGGATAAAATTCCTACTTCCTCAGTTTTCTTGGCCTC 1920
consensus_4670#1 ------------------------------------------------------------
consensus_4670#0 TGTCGCATTTGTAACTGAAATTCGTACTGTAAACATTGAAAAAAAAATCGAGGTAAAATT 1980
consensus_4670#1 ------------------------------------------------------------
consensus_4670#0 TGTAGGTTTGGCTCGAGTTTCTTTGAAATTCGTGTTTGTATTAACTCTTTACTTGAAAGG 2040
consensus_4670#1 ------------------------------------------------------------
consensus_4670#0 AAATGCTAATATGACTATG 2059
consensus_4670#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||