These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4671#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1642 fasta sequence [CCCACACCTCCACTCCACTCCACGCCATTTTTTCGCTCGCTCGCTCGCCTCGTGCCCACGTTCGCCGAGGGGAGTAGCGTTAGCGTAGCGTGCTCTTCGGGGGCGGGTTGGTTCGCGATGGGGGCGTCGGGGAAGTGGATCAGGACGCTGGTGGGGCTGAGGCCGGCGGCGGAGAGGGAGAAGGAGAGGGGCGGCGGCGGGGGGAAGGGGAGGAAGTGGAGCAGACTGTGGAGGAGCTCGTCGTCGCAGAGGGGCGGCGGGAACGCGTCGGCGTCGGAGGTGTACTCCGAGACGTCGTCCTCCGCCGACGCGCTCAGCTCCGTCGTCGCGGCCGTCGTCCGCGCGCCGCCCAGGGACTTCCGGCTCATCAGGCAGGAGTGGGCCGCCGTCCGCATCCAGACCGCCTTCCGCGCCTTCCTGGCGAGGCGGGCGCTGAGGGCGCTGCGAGGGATCGTGCGGCTGCAGGCGCTGGTGCGCGGCCGCCGCGTGCGCAAGCAGCTGGCCGTCACGCTCAAGTGCATGCAGGCGCTCGTCCGGGTGCAGGCTCGCGCGCGGGATCGGCGAGCCAGGATCTCGGCCGACGGCCTCGACTCTCAGGACATGCTCGACGAGCGCGGCGGACGCGTCGATCATGTCAAGGAAGCCGAGGCAGGATGGTGTGGTAGTCAAGGCACTGCGGATGACGTGAGATCGAAGATACACATGAGGCATGAGGGTGCAATCAAGAGAGAAAGGGCACGTACTTATGCTCAATCCCACCAGAGGTGTTCAAACCACGGTGGAAGACCCAGCTCCCCTGCTGTATCTCTCAAGCACCATGGGAATGGTGCTACTAGGAGCAACCATAGTTGGAGCTATCTGGAAGGGTGGGTGGCCACAAAACCTTGGGAGAGCCGACTGATGGAGCAAACCCACACCGAAAACTCCACCAATTCGCGGTGTTCAGAGAGCGTCGAGGAAGTAAGCGTTGGCGGCCCGAAGCTTTCTGATGCAAGCTCGGTCAAGATCAGAAGGAACAATGTTACAACAAGGGTGGCAGCAAAGCCTCCCTCCATGATCTCGGCTACCTCTTCTGATTTCGTGTGCGATGAGAGCTCCCCATCTACATCTTCTGTGACTCCACTGTCAGCCAACAATTCCCTGGCAACAGAGAGAAGATCTGATTGTGGTCAGGTTGGTGGACCGAGCTACATGAGCCTGACCAAATCAGCCAAGGCAAGGCTGAGTGGCTATGGCTCTCACAAGCCACCTCTTCAAAGGCAAAGGTCCGGTGATCTCCTCCATCACAACAACAGGATGGCATTCTCTTCCATAGATGTTCAGAGCACTGCTGGCTCGGAGGTCTCAGTAACTTCAAAGAGGTTAAACAGTTTGGCTCTTAAAGGTCGAGCCACAAGAAGTTTAGACAAGGAGAATGAGAGACGGCCTAGTTCCTTGCTTTAGGATACGCACCCTAATTGGTCCCTCAAGATATTTTAGCGGAGTCTTTAGATGTTTTACCTGTACGTATCTGCTGGTTTCAATGTCTCATTGCTTATTTTGCTCTCTATATTTATGGTGTACAAATGTGAAACTCCNCAAATGTTGAACTGTTATGTCGATCTGCTGCATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK102451 [CCCACACCTCCACTCCACTCCACGCCATTTTTTCGCTCGCTCGCTCGCCTCGTGCCCACGTTCGCCGAGGGGAGTAGCGTTAGCGTAGCGTGCTCTTCGGGGGCGGGTTGGTTCGCGATGGGGGCGTCGGGGAAGTGGATCAGGACGCTGGTGGGGCTGAGGCCGGCGGCGGAGAGGGAGAAGGAGAGGGGCGGCGGCGGGGGGAAGGGGAGGAAGTGGAGCAGACTGTGGAGGAGCTCGTCGTCGCAGAGGGGCGGCGGGAACGCGTCGGCGTCGGAGGTGTACTCCGAGACGTCGTCCTCCGCCGACGCGCTCAGCTCCGTCGTCGCGGCCGTCGTCCGCGCGCCGCCCAGGGACTTCCGGCTCATCAGGCAGGAGTGGGCCGCCGTCCGCATCCAGACCGCCTTCCGCGCCTTCCTGGCGAGGCGGGCGCTGAGGGCGCTGCGAGGGATCGTGCGGCTGCAGGCGCTGGTGCGCGGCCGCCGCGTGCGCAAGCAGCTGGCCGTCACGCTCAAGTGCATGCAGGCGCTCGTCCGGGTGCAGGCTCGCGCGCGGGATCGGCGAGCCAGGATCTCGGCCGACGGCCTCGACTCTCAGGACATGCTCGACGAGCGCGGCGGACGCGTCGATCATGTCAAGGAAGCCGAGGCAGGATGGTGTGGTAGTCAAGGCACTGCGGATGACGTGAGATCGAAGATACACATGAGGCATGAGGGTGCAATCAAGAGAGAAAGGGCACGTACTTATGCTCAATCCCACCAGAGGTGTTCAAACCACGGTGGAAGACCCAGCTCCCCTGCTGTATCTCTCAAGCACCATGGGAATGGTGCTACTAGGAGCAACCATAGTTGGAGCTATCTGGAAGGGTGGGTGGCCACAAAACCTTGGGAGAGCCGACTGATGGAGCAAACCCACACCGAAAACTCCACCAATTCGCGGTGTTCAGAGAGCGTCGAGGAAGTAAGCGTTGGCGGCCCGAAGCTTTCTGATGCAAGCTCGGTCAAGATCAGAAGGAACAATGTTACAACAAGGGTGGCAGCAAAGCCTCCCTCCATGATCTCGGCTACCTCTTCTGATTTCGTGTGCGATGAGAGCTCCCCATCTACATCTTCTGTGACTCCACTGTCAGCCAACAATTCCCTGGCAACAGAGAGAAGATCTGATTGTGGTCAGGTTGGTGGACCGAGCTACATGAGCCTGACCAAATCAGCCAAGGCAAGGCTGAGTGGCTATGGCTCTCACAAGCCACCTCTTCAAAGGCAAAGGTCCGGTGATCTCCTCCATCACAACAACAGGATGGCATTCTCTTCCATAGATGTTCAGAGCACTGCTGGCTCGGAGGTCTCAGTAACTTCAAAGAGGTTAAACAGTTTGGCTCTTAAAGGTCGAGCCACAAGAAGTTTAGACAAGGAGAATGAGAGACGGCCTAGTTCCTTGCTTTAGGATACGCACCCTAATTGGTCCCTCAAGATATTTTAGCGGAGTCTTTAGATGTTTTACCTGTACGTATCTGCTGGTTTCAATGTCTCATTGCTTATTTTGCTCTCTATATTTATGGTGTACAAAT ] [+] EMBL AU082380 [ ACTGTCAGCCAACAATTCCCTGGCAACAGAGAGAAGATCTGATTGTGGTCAGGTTGGTGGACCGAGCTACATGAGCCTGACCAAATCAGCCAAGGCAAGGCTGAGTGGCTATGGCTCTCACAAGCCACCTCTTCAAAGGCAAAGGTCCGGTGATCTCCTCCATCACAACAACAGGATGGCATTCTCTTCCATANATGTTCANAGCACTGCTGGCTCGGAGGTCTCAGTAACTTCAAANAGGTTAAACAGTTTGGCTCTTAAAGGTCGAGCCNCAAGAAGTTTAGACAAGGAGAATGAGAGACGGCCTAGTTCCTTGCTTTAGGATACGCACCCTAATTGGTCCCTCAANATATTTTAGCGGAGTCTTTANATGTTTTACCTGTACGTATCTGCTGGTTTCAATGTCTCATTGCTTATTTTGCTCTCTATATTTATGGTGTACAAATGTGAAACTCCNCAAATGTTGAACTGTTATGTCGATCTGCTGCATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_4671#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1045 fasta sequence [TTTGCATGTTTGGATGGCTATTGTTCTCATTGCAGGCAGGATGGTGTGATAGTCAAGGCACTGCGGATGACGTGAGATCGAAGATACACATGAGGCATGAGGGTGCAATCAAGAGAGAAAGGGCACGTACTTATGCTCAATCCCACCAGAGGTGTTCAAACCACGGTGGAAGACCCAGCTCCCCTGCTGTATCTCTCAAGCACCATGGGAATGGTGCTACTAGGAGCAACCATAGTTGGAGCTATCTGGAAGGGTGGATGGCCACAAAACCTTGGGAGAGCCGACTGATGGAGCAAACCCACACCGAAAACTCCACCAATTCGCGGTGTTCAGAGAGCGTCGAGGAAGTAAGCGTTGGCGGCCCGAAGCTTTCTGATGCAAGCTCGGTCAAGATCAGAAGGAACAATGTTACAACAAGGGTGGCAGCAAAGCCTCCCTCCATGATCTCGGCTACCTCTTCTGATTTCGTGTGCGATGAGAGCTCCCCATCTACATCTTCTGTGACTCCACTGTCAGCCAACAATTCCCTGGCAACAGAGAGAAGATCTGATTGTGGTCAGGTTGGTGGACCGAGCTACATGAGCCTGACCAAATCAGCCAAGGCAAGGCTGAGTGGCTATGGCTCTCACAAGCCACCTCTTCAAAGGCAAAGGTCCGGTGATCTCCTCCATCACAACAACAGGATGGCATTCTCTTCCATAGATGTTCAGAGCACTGCTGGCTCGGAGGTCTCAGTAACTTCAAAGAGGTTAAACAGTTTGGCTCTTAAAGGTCGAGCCACAAGAAGTTTAGACAAGGAGAATGAGAGACGGCCTAGTTCCTTGCTTTAGGATACGCACCCTAATTGGTCCCTCAAGATATTTTAGCGGAGTCTTTAGATGTTTTACCTGTACGTATCTGCTGGTTTCAATGTCTCATTGCTTATTTTGCTCTCTATATTTATGGTGTACAAATGTGAAACTCCACAAATGTTGAACTGTTATGTCGATCTGCTGCATTGTAAAATCTTGGGCTTGCAAACTTCTGAAGCATTATGCATGATGCT] [+] EMBL AK103875 [TTTGCATGTTTGGATGGCTATTGTTCTCATTGCAGGCAGGATGGTGTGATAGTCAAGGCACTGCGGATGACGTGAGATCGAAGATACACATGAGGCATGAGGGTGCAATCAAGAGAGAAAGGGCACGTACTTATGCTCAATCCCACCAGAGGTGTTCAAACCACGGTGGAAGACCCAGCTCCCCTGCTGTATCTCTCAAGCACCATGGGAATGGTGCTACTAGGAGCAACCATAGTTGGAGCTATCTGGAAGGGTGGATGGCCACAAAACCTTGGGAGAGCCGACTGATGGAGCAAACCCACACCGAAAACTCCACCAATTCGCGGTGTTCAGAGAGCGTCGAGGAAGTAAGCGTTGGCGGCCCGAAGCTTTCTGATGCAAGCTCGGTCAAGATCAGAAGGAACAATGTTACAACAAGGGTGGCAGCAAAGCCTCCCTCCATGATCTCGGCTACCTCTTCTGATTTCGTGTGCGATGAGAGCTCCCCATCTACATCTTCTGTGACTCCACTGTCAGCCAACAATTCCCTGGCAACAGAGAGAAGATCTGATTGTGGTCAGGTTGGTGGACCGAGCTACATGAGCCTGACCAAATCAGCCAAGGCAAGGCTGAGTGGCTATGGCTCTCACAAGCCACCTCTTCAAAGGCAAAGGTCCGGTGATCTCCTCCATCACAACAACAGGATGGCATTCTCTTCCATAGATGTTCAGAGCACTGCTGGCTCGGAGGTCTCAGTAACTTCAAAGAGGTTAAACAGTTTGGCTCTTAAAGGTCGAGCCACAAGAAGTTTAGACAAGGAGAATGAGAGACGGCCTAGTTCCTTGCTTTAGGATACGCACCCTAATTGGTCCCTCAAGATATTTTAGCGGAGTCTTTAGATGTTTTACCTGTACGTATCTGCTGGTTTCAATGTCTCATTGCTTATTTTGCTCTCTATATTTATGGTGTACAAATGTGAAACTCCACAAATGTTGAACTGTTATGTCGATCTGCTGCATTGTAAAATCTTGGGCTTGCAAACTTCTGAAGCATTATGCATGATGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4671#0 CCCACACCTCCACTCCACTCCACGCCATTTTTTCGCTCGCTCGCTCGCCTCGTGCCCACG 60 consensus_4671#1 ------------------------------------------------------------ consensus_4671#0 TTCGCCGAGGGGAGTAGCGTTAGCGTAGCGTGCTCTTCGGGGGCGGGTTGGTTCGCGATG 120 consensus_4671#1 ------------------------------------------------------------ consensus_4671#0 GGGGCGTCGGGGAAGTGGATCAGGACGCTGGTGGGGCTGAGGCCGGCGGCGGAGAGGGAG 180 consensus_4671#1 ------------------------------------------------------------ consensus_4671#0 AAGGAGAGGGGCGGCGGCGGGGGGAAGGGGAGGAAGTGGAGCAGACTGTGGAGGAGCTCG 240 consensus_4671#1 ------------------------------------------------------------ consensus_4671#0 TCGTCGCAGAGGGGCGGCGGGAACGCGTCGGCGTCGGAGGTGTACTCCGAGACGTCGTCC 300 consensus_4671#1 ------------------------------------------------------------ consensus_4671#0 TCCGCCGACGCGCTCAGCTCCGTCGTCGCGGCCGTCGTCCGCGCGCCGCCCAGGGACTTC 360 consensus_4671#1 ------------------------------------------------------------ consensus_4671#0 CGGCTCATCAGGCAGGAGTGGGCCGCCGTCCGCATCCAGACCGCCTTCCGCGCCTTCCTG 420 consensus_4671#1 ------------------------------------------------------------ consensus_4671#0 GCGAGGCGGGCGCTGAGGGCGCTGCGAGGGATCGTGCGGCTGCAGGCGCTGGTGCGCGGC 480 consensus_4671#1 ------------------------------------------------------------ consensus_4671#0 CGCCGCGTGCGCAAGCAGCTGGCCGTCACGCTCAAGTGCATGCAGGCGCTCGTCCGGGTG 540 consensus_4671#1 ------------------------------------------------------------ consensus_4671#0 CAGGCTCGCGCGCGGGATCGGCGAGCCAGGATCTCGGCCGACGGCCTCGACTCTCAGGAC 600 consensus_4671#1 ------------------------------------------------------------ consensus_4671#0 ATGCTCGACGAGCGCGGCGGACGCGTCGATCATGTCAAGGAAGCCGAGGCAGGATGGTGT 660 consensus_4671#1 ----TTTGCATGTTTGGATGGC-TATTGTTCTCATTGC--------AGGCAGGATGGTGT 47 * * * ** * * * * ** * ************** consensus_4671#0 GGTAGTCAAGGCACTGCGGATGACGTGAGATCGAAGATACACATGAGGCATGAGGGTGCA 720 consensus_4671#1 GATAGTCAAGGCACTGCGGATGACGTGAGATCGAAGATACACATGAGGCATGAGGGTGCA 107 * ********************************************************** consensus_4671#0 ATCAAGAGAGAAAGGGCACGTACTTATGCTCAATCCCACCAGAGGTGTTCAAACCACGGT 780 consensus_4671#1 ATCAAGAGAGAAAGGGCACGTACTTATGCTCAATCCCACCAGAGGTGTTCAAACCACGGT 167 ************************************************************ consensus_4671#0 GGAAGACCCAGCTCCCCTGCTGTATCTCTCAAGCACCATGGGAATGGTGCTACTAGGAGC 840 consensus_4671#1 GGAAGACCCAGCTCCCCTGCTGTATCTCTCAAGCACCATGGGAATGGTGCTACTAGGAGC 227 ************************************************************ consensus_4671#0 AACCATAGTTGGAGCTATCTGGAAGGGTGGGTGGCCACAAAACCTTGGGAGAGCCGACTG 900 consensus_4671#1 AACCATAGTTGGAGCTATCTGGAAGGGTGGATGGCCACAAAACCTTGGGAGAGCCGACTG 287 ****************************** ***************************** consensus_4671#0 ATGGAGCAAACCCACACCGAAAACTCCACCAATTCGCGGTGTTCAGAGAGCGTCGAGGAA 960 consensus_4671#1 ATGGAGCAAACCCACACCGAAAACTCCACCAATTCGCGGTGTTCAGAGAGCGTCGAGGAA 347 ************************************************************ consensus_4671#0 GTAAGCGTTGGCGGCCCGAAGCTTTCTGATGCAAGCTCGGTCAAGATCAGAAGGAACAAT 1020 consensus_4671#1 GTAAGCGTTGGCGGCCCGAAGCTTTCTGATGCAAGCTCGGTCAAGATCAGAAGGAACAAT 407 ************************************************************ consensus_4671#0 GTTACAACAAGGGTGGCAGCAAAGCCTCCCTCCATGATCTCGGCTACCTCTTCTGATTTC 1080 consensus_4671#1 GTTACAACAAGGGTGGCAGCAAAGCCTCCCTCCATGATCTCGGCTACCTCTTCTGATTTC 467 ************************************************************ consensus_4671#0 GTGTGCGATGAGAGCTCCCCATCTACATCTTCTGTGACTCCACTGTCAGCCAACAATTCC 1140 consensus_4671#1 GTGTGCGATGAGAGCTCCCCATCTACATCTTCTGTGACTCCACTGTCAGCCAACAATTCC 527 ************************************************************ consensus_4671#0 CTGGCAACAGAGAGAAGATCTGATTGTGGTCAGGTTGGTGGACCGAGCTACATGAGCCTG 1200 consensus_4671#1 CTGGCAACAGAGAGAAGATCTGATTGTGGTCAGGTTGGTGGACCGAGCTACATGAGCCTG 587 ************************************************************ consensus_4671#0 ACCAAATCAGCCAAGGCAAGGCTGAGTGGCTATGGCTCTCACAAGCCACCTCTTCAAAGG 1260 consensus_4671#1 ACCAAATCAGCCAAGGCAAGGCTGAGTGGCTATGGCTCTCACAAGCCACCTCTTCAAAGG 647 ************************************************************ consensus_4671#0 CAAAGGTCCGGTGATCTCCTCCATCACAACAACAGGATGGCATTCTCTTCCATAGATGTT 1320 consensus_4671#1 CAAAGGTCCGGTGATCTCCTCCATCACAACAACAGGATGGCATTCTCTTCCATAGATGTT 707 ************************************************************ consensus_4671#0 CAGAGCACTGCTGGCTCGGAGGTCTCAGTAACTTCAAAGAGGTTAAACAGTTTGGCTCTT 1380 consensus_4671#1 CAGAGCACTGCTGGCTCGGAGGTCTCAGTAACTTCAAAGAGGTTAAACAGTTTGGCTCTT 767 ************************************************************ consensus_4671#0 AAAGGTCGAGCCACAAGAAGTTTAGACAAGGAGAATGAGAGACGGCCTAGTTCCTTGCTT 1440 consensus_4671#1 AAAGGTCGAGCCACAAGAAGTTTAGACAAGGAGAATGAGAGACGGCCTAGTTCCTTGCTT 827 ************************************************************ consensus_4671#0 TAGGATACGCACCCTAATTGGTCCCTCAAGATATTTTAGCGGAGTCTTTAGATGTTTTAC 1500 consensus_4671#1 TAGGATACGCACCCTAATTGGTCCCTCAAGATATTTTAGCGGAGTCTTTAGATGTTTTAC 887 ************************************************************ consensus_4671#0 CTGTACGTATCTGCTGGTTTCAATGTCTCATTGCTTATTTTGCTCTCTATATTTATGGTG 1560 consensus_4671#1 CTGTACGTATCTGCTGGTTTCAATGTCTCATTGCTTATTTTGCTCTCTATATTTATGGTG 947 ************************************************************ consensus_4671#0 TACAAATGTGAAACTCCNCAAATGTTGAACTGTTATGTCGATCTGCTGCATTGTAAAAAA 1620 consensus_4671#1 TACAAATGTGAAACTCCACAAATGTTGAACTGTTATGTCGATCTGCTGCATTGTAAAATC 1007 ***************** **************************************** consensus_4671#0 AAAAAAAAAAAAAAAAAAAAAA---------------- 1642 consensus_4671#1 TTGGGCTTGCAAACTTCTGAAGCATTATGCATGATGCT 1045 *** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||