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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1587 fasta sequence
[AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATCGCCATGGCGTCGCGACTCGTGGCCCGGTCGAGGAGAGGCCTAGCGCTCGCCCTCTCCCGCGCCGGCGCCGGCGCCCCGTCGCGGCCCTCCCCTCCTGGCCTCGGCAAGACTCTGGGGTATGAGCCAACATCACATCTCCATGGTGCTCAGTTTTTACCTTGTTGGTTTTCAACTATTGCATCTAATGGATCTCACATGCAAAAGGCACAGGAGACATGTAAGCCAGTTGCTGGAATGGAACACTCTGATGCACTGAAAGTAATGGAAGGAACCTCTCCTAAAGTTGTGGCATTCAGCCCACTAGAAGCAGCTATCACTAAACCTAGAAGCAGTCCCTTGACAATTGAAAGTTCTAAAGTAAAGCGATCAGAGATTGCAACGCTAGTCACATTTTACATGATCCCTTCTCTGCTTGTTTCCTCAAAAAATGGGCTTGCTACCTCTATTTTGGTTGGCGCAGTATTCCATCAAATATACATGTTTCACAAGGAGATATTTCTGGACTATGTGCACCATGATATCACCAGGAAGTGGGCTTTGATATACTTCAAGCTGCTTTTGTTGATCATGGCGAAGGAAACCATTGTGTATTTCAACTTTATCTGAGTTTTATCTCTTGCAGAGGGACAATCTATGTACTCATCCATACACCAGAAAAAATGACGGTGGTGGATAAAATTCTGGCGCCTTGTTCTCTTCATGGACATTTTCAACATTTTTCCTTCTCAACTTCATTTGTATATGCACTTGAAAGAGGATGATTAGTGATCAATGAAGCAATTAGTTCGACTTCATTCTTGTTTATAATAATAGCAACTGATATGAACTGTTTGGTATTTGCTAGCACGATGCAGCCATATGGATTTTGTTTTCCATGTATGAATTATCATCTTATGTGCATATATTTCTCCTTTTGGAGGCTTGAGCTGCCATTATTTTTTTGCGAATCCTTCAGACTCCAGTCCTACATGAATCCAGCGCTATGCTCCTTTTTGGAGGTTTTGTTACTGCAGAGATGATTGTGTGTTTAACTTTATTGATTGGTTTGATTGTTTCTGCAGATGTTACAAAGATTGGCCGGTTGCAGTTTGTTTGAAATGCTAGGATTCAGAAGTCCCTCCAGATGCTTGCTTCAAATATACTTACTACTCAGTAAATGATAGGAGTACTGCTCTGTAAATGCATGAAAAAACAGTGATGGAGAAATCTGATGCTTGTGTACCCAATGATGCAGGATCAGTCCTCCTTGGTGAACACGCTGGAATTTCCCAATAATTTGCAGTATCCCACAACATTCAGAAAACCAAATTCCTTGGAAATTCACGACACAAGGTAAAGAACAAAAACCCATGACGTTTTGCTTTGCAATTTGCAGGTAGGGCTCTGCTGTCCTTGCTGCTGCTGCTGGATTTGAAAGAAAAAAACCTGTGTACGATGTACGTACGCCGGCTGCATCCTTGTACAGCCATGTTCATGTGAGAGCGGAAAAAACTGCCTTCCAGCTCAGCTCTGCAGGGCTGAATTGCCGCCTGGATCCTGCGGCCGCCATGTTT]
[+] EMBL AK069732 [AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATCGCCATGGCGTCGCGACTCGTGGCCCGGTCGAGGAGAGGCCTAGCGCTCGCCCTCTCCCGCGCCGGCGCCGGCGCCCCGTCGCGGCCCTCCCCTCCTGGCCTCGGCAAGACTCTGGGGTATGAGCCAACATCACATCTCCATGGTGCTCAGTTTTTACCTTGTTGGTTTTCAACTATTGCATCTAATGGATCTCACATGCAAAAGGCACAGGAGACATGTAAGCCAGTTGCTGGAATGGAACACTCTGATGCACTGAAAGTAATGGAAGGAACCTCTCCTAAAGTTGTGGCATTCAGCCCACTAGAAGCAGCTATCACTAAACCTAGAAGCAGTCCCTTGACAATTGAAAGTTCTAAAGTAAAGCGATCAGAGATTGCAACGCTAGTCACATTTTACATGATCCCTTCTCTGCTTGTTTCCTCAAAAAATGGGCTTGCTACCTCTATTTTGGTTGGCGCAGTATTCCATCAAATATACATGTTTCACAAGGAGATATTTCTGGACTATGTGCACCATGATATCACCAGGAAGTGGGCTTTGATATACTTCAAGCTGCTTTTGTTGATCATGGCGAAGGAAACCATTGTGTATTTCAACTTTATCTGAGTTTTATCTCTTGCAGAGGGACAATCTATGTACTCATCCATACACCAGAAAAAATGACGGTGGTGGATAAAATTCTGGCGCCTTGTTCTCTTCATGGACATTTTCAACATTTTTCCTTCTCAACTTCATTTGTATATGCACTTGAAAGAGGATGATTAGTGATCAATGAAGCAATTAGTTCGACTTCATTCTTGTTTATAATAATAGCAACTGATATGAACTGTTTGGTATTTGCTAGCACGATGCAGCCATATGGATTTTGTTTTCCATGTATGAATTATCATCTTATGTGCATATATTTCTCCTTTTGGAGGCTTGAGCTGCCATTATTTTTTTGCGAATCCTTCAGACTCCAGTCCTACATGAATCCAGCGCTATGCTCCTTTTTGGAGGTTTTGTTACTGCAGAGATGATTGTGTGTTTAACTTTATTGATTGGTTTGATTGTTTCTGCAGATGTTACAAAGATTGGCCGGTTGCAGTTTGTTTGAAATGCTAGGATTCAGAAGTCCCTCCAGATGCTTGCTTCAAATATACTTACTACTCAGTAAATGATAGGAGTACTGCTCTGTAAATGCATGAAAAAACAGTGATGGAGAAATCTGATGCTTGTGTACCCAATGATGCAGGATCAGTCCTCCTTGGTGAACACGCTGGAATTTCCCAATAATTTGCAGTATCCCACAACATTCAGAAAACCAAATTCCTTGGAAATTCACGACACAAGGTAAAGAACAAAAACCCATGACGTTTTGCTTTGCAATTTGCAGGTAGGGCTCTGCTGTCCTTGCTGCTGCTGCTGGATTTGAAAGAAAAAAACCTGTGTACGATGTACGTACGCCGGCTGCATCCTTGTACAGCCATGTTCATGTGAGAGCGGAAAAAACTGCCTTCCAGCTCAGCTCTGCAGGGCTGAATTGCCGCCTGGATCCTGCGGCCGCCATGTTT]
[+] EMBL AK100218 [AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATCGCCATGGCGTCGCGACTCGTGGCCCGGTCGAGGAGAGGCCTAGCGCTCGCCCTCTCCCGCGCCGGCGCCGGCGCCCCGTCGCGGCCCTCCCCTCCTGGCCTCGGCAAGACTCTGGGGTATGAGCCAACATCACATCTCCATGGTGCTCAGTTTTTACCTTGTTGGTTTTCAACTATTGCATCTAATGGATCTCACATGCAAAAGGCACAGGAGACATGTAAGCCAGTTGCTGGAATGGAACACTCTGATGCACTGAAAGTAATGGAAGGAACCTCTCCTAAAGTTGTGGCATTCAGCCCACTAGAAGCAGCTATCACTAAACCTAGAAGCAGTCCCTTGACAATTGAAAGTTCTAAAGTAAAGCGATCAGAGATTGCAACGCTAGTCACATTTTACATGATCCCTTCTCTGCTTGTTTCCTCAAAAAATGGGCTTGCTACCTCTATTTTGGTTGGCGCAGTATTCCATCAAATATACATGTTTCACAAGGAGATATTTCTGGACTATGTGCACCATGATATCACCAGGAAGTGGGCTTTGATATACTTCAAGCTGCTTTTGTTGATCATGGCGAAGGAAACCATTGTGTATTTCAACTTTATCTGAGTTTTATCTCTTGCAGAGGGACAATCTATGTACTCATCCATACACCAGAAAAAATGACGGTGGTGGATAAAATTCTGGCGCCTTGTTCTCTTCATGGACATTTTCAACATTTTTCCTTCTCAACTTCATTTGTATATGCACTTGAAAGAGGATGATTAGTGATCAATGAAGCAATTAGTTCGACTTCATTCTTGTTTATAATAATAGCAACTGATATGAACTGTTTGGTATTTGCTAGCACGATGCAGCCATATGGATTTTGTTTTCCATGTATGAATTATCATCTTATGTGCATATATTTCTCCTTTTGGAGGCTTGAGCTGCCATTATTTTTTTGCGAATCCTTCAGACTCCAGTCCTACATGAATCCAGCGCTATGCTCCTTTTTGGAGGTTTTGTTACTGCAGAGATGATTGTGTGTTTAACTTTATTGATTGGTTTGATTGTTTCTGCAGATGTTACAAAGATTGGCCGGTTGCAGTTTGTTTGAAATGCTAGGATTCAGAAGTCCCTCCAGATGCTTGCTTCAAATATACTTACTACTCAGTAAATGATAGGAGTACTGCTCTGTAAATGCATGAAAAAACAGTGATGGAGAAATCTGATGCTTGTGTACCCAATGATGCAGGATCAGTCCTCCTTGGTGAACACGCTGGAATTTCCCAATAATTTGCAGTATCCCACAACATTCAGAAAACCAAATTCCTTGGAAATTCACGACACAAGGTAAAGAACAAAAACCCATGACGTTTTGCTTTGCAATTTGCAGGTAGGGCTCTGCTGTCCTTGCTGCTGCTGCTGGATTTGAAAGAAAAAAACCTGTGTACGATGTACGTACGCCGGCTGCATCCTTGTACAGCCATGTTCATGTGAGAGCGGAAAAAACTGCCTTCCAGCTCAGCTCTGCAGGGCTGAATTGCCGCCTGGATCCTGCGGCCGCCATGTTT]
consensusID : consensus_4672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence
[GATGGCAAACGCTAGGTCACAGTTTGTACATGATCCTTCTCTGCTTGTTTCCTCAAAAAATGGGCTTGCTACCTCTATTTTGGTTGGCGCAGTATTCCATCAAATATACATGTTTCACAAGGAGATATTTCTGGACTATGTGCACCATGATATCACCAGGAAGTGGGCTTTGATATACTTCAAGCTGCTTTTGTTGATCATGGCGAAGGAAACCCTTGTGTATTTCAACTTTATCTGAGTTTTATCTCTTGCAGAGGGACATCTATGTACTCATCCATACACCAGAAAAAATGACGGTGGTGGATAAAATTCTGGCGCCTTGTTCTCTTCATGGACATTTTCAACATTTTTCCTTCTCAACTTCATTTGTATATGCACTTGAAAGAGGATGATTAGTGATCAATGAAGCAATTAGTTCGACTTCATTCTTGTTTATAATAATAGCACTGATATGAACTGTTTGGTATTTGCTAGCACGATGCAGCCATATGGATTTTGTTTTCCATGTATGAATTATCATCTTATGTGCATATATTTCTCCTTTTGGAGGCTTGAGCTGCCCAAAAAAAAAA]
[+] EMBL BI805239 [GATGGCAAACGCTAGGTCACAGTTTGTACATGATCCTTCTCTGCTTGTTTCCTCAAAAAATGGGCTTGCTACCTCTATTTTGGTTGGCGCAGTATTCCATCAAATATACATGTTTCACAAGGAGATATTTCTGGACTATGTGCACCATGATATCACCAGGAAGTGGGCTTTGATATACTTCAAGCTGCTTTTGTTGATCATGGCGAAGGAAACCCTTGTGTATTTCAACTTTATCTGAGTTTTATCTCTTGCAGAGGGACATCTATGTACTCATCCATACACCAGAAAAAATGACGGTGGTGGATAAAATTCTGGCGCCTTGTTCTCTTCATGGACATTTTCAACATTTTTCCTTCTCAACTTCATTTGTATATGCACTTGAAAGAGGATGATTAGTGATCAATGAAGCAATTAGTTCGACTTCATTCTTGTTTATAATAATAGCACTGATATGAACTGTTTGGTATTTGCTAGCACGATGCAGCCATATGGATTTTGTTTTCCATGTATGAATTATCATCTTATGTGCATATATTTCTCCTTTTGGAGGCTTGAGCTGCCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4672#0 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATCGCCATGGCGTCGCGACTCGTGGCCCG 60
consensus_4672#1 ------------------------------------------------------------
consensus_4672#0 GTCGAGGAGAGGCCTAGCGCTCGCCCTCTCCCGCGCCGGCGCCGGCGCCCCGTCGCGGCC 120
consensus_4672#1 ------------------------------------------------------------
consensus_4672#0 CTCCCCTCCTGGCCTCGGCAAGACTCTGGGGTATGAGCCAACATCACATCTCCATGGTGC 180
consensus_4672#1 ------------------------------------------------------------
consensus_4672#0 TCAGTTTTTACCTTGTTGGTTTTCAACTATTGCATCTAATGGATCTCACATGCAAAAGGC 240
consensus_4672#1 ------------------------------------------------------------
consensus_4672#0 ACAGGAGACATGTAAGCCAGTTGCTGGAATGGAACACTCTGATGCACTGAAAGTAATGGA 300
consensus_4672#1 ------------------------------------------------------------
consensus_4672#0 AGGAACCTCTCCTAAAGTTGTGGCATTCAGCCCACTAGAAGCAGCTATCACTAAACCTAG 360
consensus_4672#1 ------------------------------------------------------------
consensus_4672#0 AAGCAGTCCCTTGACAATTGAAAGTTCTAAAGTAAAGCGATCAGAGATTGCAA-CGCTAG 419
consensus_4672#1 ---------------------------------------------GATGGCAAACGCTAG 15
*** **** ******
consensus_4672#0 -TCACATTTT--ACATGATCCCTTCTCTGCTTGTTTCCTCAAAAAATGGGCTTGCTACCT 476
consensus_4672#1 GTCACAGTTTGTACATGATCC-TTCTCTGCTTGTTTCCTCAAAAAATGGGCTTGCTACCT 74
***** *** ********* **************************************
consensus_4672#0 CTATTTTGGTTGGCGCAGTATTCCATCAAATATACATGTTTCACAAGGAGATATTTCTGG 536
consensus_4672#1 CTATTTTGGTTGGCGCAGTATTCCATCAAATATACATGTTTCACAAGGAGATATTTCTGG 134
************************************************************
consensus_4672#0 ACTATGTGCACCATGATATCACCAGGAAGTGGGCTTTGATATACTTCAAGCTGCTTTTGT 596
consensus_4672#1 ACTATGTGCACCATGATATCACCAGGAAGTGGGCTTTGATATACTTCAAGCTGCTTTTGT 194
************************************************************
consensus_4672#0 TGATCATGGCGAAGGAAACCATTGTGTATTTCAACTTTATCTGAGTTTTATCTCTTGCAG 656
consensus_4672#1 TGATCATGGCGAAGGAAACCCTTGTGTATTTCAACTTTATCTGAGTTTTATCTCTTGCAG 254
******************** ***************************************
consensus_4672#0 AGGGACAATCTATGTACTCATCCATACACCAGAAAAAATGACGGTGGTGGATAAAATTCT 716
consensus_4672#1 AGGGACA-TCTATGTACTCATCCATACACCAGAAAAAATGACGGTGGTGGATAAAATTCT 313
******* ****************************************************
consensus_4672#0 GGCGCCTTGTTCTCTTCATGGACATTTTCAACATTTTTCCTTCTCAACTTCATTTGTATA 776
consensus_4672#1 GGCGCCTTGTTCTCTTCATGGACATTTTCAACATTTTTCCTTCTCAACTTCATTTGTATA 373
************************************************************
consensus_4672#0 TGCACTTGAAAGAGGATGATTAGTGATCAATGAAGCAATTAGTTCGACTTCATTCTTGTT 836
consensus_4672#1 TGCACTTGAAAGAGGATGATTAGTGATCAATGAAGCAATTAGTTCGACTTCATTCTTGTT 433
************************************************************
consensus_4672#0 TATAATAATAGCAACTGATATGAACTGTTTGGTATTTGCTAGCACGATGCAGCCATATGG 896
consensus_4672#1 TATAATAATAGCA-CTGATATGAACTGTTTGGTATTTGCTAGCACGATGCAGCCATATGG 492
************* **********************************************
consensus_4672#0 ATTTTGTTTTCCATGTATGAATTATCATCTTATGTGCATATATTTCTCCTTTTGGAGGCT 956
consensus_4672#1 ATTTTGTTTTCCATGTATGAATTATCATCTTATGTGCATATATTTCTCCTTTTGGAGGCT 552
************************************************************
consensus_4672#0 TGAGCTGCCATTATTTTTTTGCGAATCCTTCAGACTCCAGTCCTACATGAATCCAGCGCT 1016
consensus_4672#1 TGAGCTGCCCAAAAAAAAAA---------------------------------------- 572
********* *
consensus_4672#0 ATGCTCCTTTTTGGAGGTTTTGTTACTGCAGAGATGATTGTGTGTTTAACTTTATTGATT 1076
consensus_4672#1 ------------------------------------------------------------
consensus_4672#0 GGTTTGATTGTTTCTGCAGATGTTACAAAGATTGGCCGGTTGCAGTTTGTTTGAAATGCT 1136
consensus_4672#1 ------------------------------------------------------------
consensus_4672#0 AGGATTCAGAAGTCCCTCCAGATGCTTGCTTCAAATATACTTACTACTCAGTAAATGATA 1196
consensus_4672#1 ------------------------------------------------------------
consensus_4672#0 GGAGTACTGCTCTGTAAATGCATGAAAAAACAGTGATGGAGAAATCTGATGCTTGTGTAC 1256
consensus_4672#1 ------------------------------------------------------------
consensus_4672#0 CCAATGATGCAGGATCAGTCCTCCTTGGTGAACACGCTGGAATTTCCCAATAATTTGCAG 1316
consensus_4672#1 ------------------------------------------------------------
consensus_4672#0 TATCCCACAACATTCAGAAAACCAAATTCCTTGGAAATTCACGACACAAGGTAAAGAACA 1376
consensus_4672#1 ------------------------------------------------------------
consensus_4672#0 AAAACCCATGACGTTTTGCTTTGCAATTTGCAGGTAGGGCTCTGCTGTCCTTGCTGCTGC 1436
consensus_4672#1 ------------------------------------------------------------
consensus_4672#0 TGCTGGATTTGAAAGAAAAAAACCTGTGTACGATGTACGTACGCCGGCTGCATCCTTGTA 1496
consensus_4672#1 ------------------------------------------------------------
consensus_4672#0 CAGCCATGTTCATGTGAGAGCGGAAAAAACTGCCTTCCAGCTCAGCTCTGCAGGGCTGAA 1556
consensus_4672#1 ------------------------------------------------------------
consensus_4672#0 TTGCCGCCTGGATCCTGCGGCCGCCATGTTT 1587
consensus_4672#1 -------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||