These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1587 fasta sequence [AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATCGCCATGGCGTCGCGACTCGTGGCCCGGTCGAGGAGAGGCCTAGCGCTCGCCCTCTCCCGCGCCGGCGCCGGCGCCCCGTCGCGGCCCTCCCCTCCTGGCCTCGGCAAGACTCTGGGGTATGAGCCAACATCACATCTCCATGGTGCTCAGTTTTTACCTTGTTGGTTTTCAACTATTGCATCTAATGGATCTCACATGCAAAAGGCACAGGAGACATGTAAGCCAGTTGCTGGAATGGAACACTCTGATGCACTGAAAGTAATGGAAGGAACCTCTCCTAAAGTTGTGGCATTCAGCCCACTAGAAGCAGCTATCACTAAACCTAGAAGCAGTCCCTTGACAATTGAAAGTTCTAAAGTAAAGCGATCAGAGATTGCAACGCTAGTCACATTTTACATGATCCCTTCTCTGCTTGTTTCCTCAAAAAATGGGCTTGCTACCTCTATTTTGGTTGGCGCAGTATTCCATCAAATATACATGTTTCACAAGGAGATATTTCTGGACTATGTGCACCATGATATCACCAGGAAGTGGGCTTTGATATACTTCAAGCTGCTTTTGTTGATCATGGCGAAGGAAACCATTGTGTATTTCAACTTTATCTGAGTTTTATCTCTTGCAGAGGGACAATCTATGTACTCATCCATACACCAGAAAAAATGACGGTGGTGGATAAAATTCTGGCGCCTTGTTCTCTTCATGGACATTTTCAACATTTTTCCTTCTCAACTTCATTTGTATATGCACTTGAAAGAGGATGATTAGTGATCAATGAAGCAATTAGTTCGACTTCATTCTTGTTTATAATAATAGCAACTGATATGAACTGTTTGGTATTTGCTAGCACGATGCAGCCATATGGATTTTGTTTTCCATGTATGAATTATCATCTTATGTGCATATATTTCTCCTTTTGGAGGCTTGAGCTGCCATTATTTTTTTGCGAATCCTTCAGACTCCAGTCCTACATGAATCCAGCGCTATGCTCCTTTTTGGAGGTTTTGTTACTGCAGAGATGATTGTGTGTTTAACTTTATTGATTGGTTTGATTGTTTCTGCAGATGTTACAAAGATTGGCCGGTTGCAGTTTGTTTGAAATGCTAGGATTCAGAAGTCCCTCCAGATGCTTGCTTCAAATATACTTACTACTCAGTAAATGATAGGAGTACTGCTCTGTAAATGCATGAAAAAACAGTGATGGAGAAATCTGATGCTTGTGTACCCAATGATGCAGGATCAGTCCTCCTTGGTGAACACGCTGGAATTTCCCAATAATTTGCAGTATCCCACAACATTCAGAAAACCAAATTCCTTGGAAATTCACGACACAAGGTAAAGAACAAAAACCCATGACGTTTTGCTTTGCAATTTGCAGGTAGGGCTCTGCTGTCCTTGCTGCTGCTGCTGGATTTGAAAGAAAAAAACCTGTGTACGATGTACGTACGCCGGCTGCATCCTTGTACAGCCATGTTCATGTGAGAGCGGAAAAAACTGCCTTCCAGCTCAGCTCTGCAGGGCTGAATTGCCGCCTGGATCCTGCGGCCGCCATGTTT] [+] EMBL AK069732 [AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATCGCCATGGCGTCGCGACTCGTGGCCCGGTCGAGGAGAGGCCTAGCGCTCGCCCTCTCCCGCGCCGGCGCCGGCGCCCCGTCGCGGCCCTCCCCTCCTGGCCTCGGCAAGACTCTGGGGTATGAGCCAACATCACATCTCCATGGTGCTCAGTTTTTACCTTGTTGGTTTTCAACTATTGCATCTAATGGATCTCACATGCAAAAGGCACAGGAGACATGTAAGCCAGTTGCTGGAATGGAACACTCTGATGCACTGAAAGTAATGGAAGGAACCTCTCCTAAAGTTGTGGCATTCAGCCCACTAGAAGCAGCTATCACTAAACCTAGAAGCAGTCCCTTGACAATTGAAAGTTCTAAAGTAAAGCGATCAGAGATTGCAACGCTAGTCACATTTTACATGATCCCTTCTCTGCTTGTTTCCTCAAAAAATGGGCTTGCTACCTCTATTTTGGTTGGCGCAGTATTCCATCAAATATACATGTTTCACAAGGAGATATTTCTGGACTATGTGCACCATGATATCACCAGGAAGTGGGCTTTGATATACTTCAAGCTGCTTTTGTTGATCATGGCGAAGGAAACCATTGTGTATTTCAACTTTATCTGAGTTTTATCTCTTGCAGAGGGACAATCTATGTACTCATCCATACACCAGAAAAAATGACGGTGGTGGATAAAATTCTGGCGCCTTGTTCTCTTCATGGACATTTTCAACATTTTTCCTTCTCAACTTCATTTGTATATGCACTTGAAAGAGGATGATTAGTGATCAATGAAGCAATTAGTTCGACTTCATTCTTGTTTATAATAATAGCAACTGATATGAACTGTTTGGTATTTGCTAGCACGATGCAGCCATATGGATTTTGTTTTCCATGTATGAATTATCATCTTATGTGCATATATTTCTCCTTTTGGAGGCTTGAGCTGCCATTATTTTTTTGCGAATCCTTCAGACTCCAGTCCTACATGAATCCAGCGCTATGCTCCTTTTTGGAGGTTTTGTTACTGCAGAGATGATTGTGTGTTTAACTTTATTGATTGGTTTGATTGTTTCTGCAGATGTTACAAAGATTGGCCGGTTGCAGTTTGTTTGAAATGCTAGGATTCAGAAGTCCCTCCAGATGCTTGCTTCAAATATACTTACTACTCAGTAAATGATAGGAGTACTGCTCTGTAAATGCATGAAAAAACAGTGATGGAGAAATCTGATGCTTGTGTACCCAATGATGCAGGATCAGTCCTCCTTGGTGAACACGCTGGAATTTCCCAATAATTTGCAGTATCCCACAACATTCAGAAAACCAAATTCCTTGGAAATTCACGACACAAGGTAAAGAACAAAAACCCATGACGTTTTGCTTTGCAATTTGCAGGTAGGGCTCTGCTGTCCTTGCTGCTGCTGCTGGATTTGAAAGAAAAAAACCTGTGTACGATGTACGTACGCCGGCTGCATCCTTGTACAGCCATGTTCATGTGAGAGCGGAAAAAACTGCCTTCCAGCTCAGCTCTGCAGGGCTGAATTGCCGCCTGGATCCTGCGGCCGCCATGTTT] [+] EMBL AK100218 [AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATCGCCATGGCGTCGCGACTCGTGGCCCGGTCGAGGAGAGGCCTAGCGCTCGCCCTCTCCCGCGCCGGCGCCGGCGCCCCGTCGCGGCCCTCCCCTCCTGGCCTCGGCAAGACTCTGGGGTATGAGCCAACATCACATCTCCATGGTGCTCAGTTTTTACCTTGTTGGTTTTCAACTATTGCATCTAATGGATCTCACATGCAAAAGGCACAGGAGACATGTAAGCCAGTTGCTGGAATGGAACACTCTGATGCACTGAAAGTAATGGAAGGAACCTCTCCTAAAGTTGTGGCATTCAGCCCACTAGAAGCAGCTATCACTAAACCTAGAAGCAGTCCCTTGACAATTGAAAGTTCTAAAGTAAAGCGATCAGAGATTGCAACGCTAGTCACATTTTACATGATCCCTTCTCTGCTTGTTTCCTCAAAAAATGGGCTTGCTACCTCTATTTTGGTTGGCGCAGTATTCCATCAAATATACATGTTTCACAAGGAGATATTTCTGGACTATGTGCACCATGATATCACCAGGAAGTGGGCTTTGATATACTTCAAGCTGCTTTTGTTGATCATGGCGAAGGAAACCATTGTGTATTTCAACTTTATCTGAGTTTTATCTCTTGCAGAGGGACAATCTATGTACTCATCCATACACCAGAAAAAATGACGGTGGTGGATAAAATTCTGGCGCCTTGTTCTCTTCATGGACATTTTCAACATTTTTCCTTCTCAACTTCATTTGTATATGCACTTGAAAGAGGATGATTAGTGATCAATGAAGCAATTAGTTCGACTTCATTCTTGTTTATAATAATAGCAACTGATATGAACTGTTTGGTATTTGCTAGCACGATGCAGCCATATGGATTTTGTTTTCCATGTATGAATTATCATCTTATGTGCATATATTTCTCCTTTTGGAGGCTTGAGCTGCCATTATTTTTTTGCGAATCCTTCAGACTCCAGTCCTACATGAATCCAGCGCTATGCTCCTTTTTGGAGGTTTTGTTACTGCAGAGATGATTGTGTGTTTAACTTTATTGATTGGTTTGATTGTTTCTGCAGATGTTACAAAGATTGGCCGGTTGCAGTTTGTTTGAAATGCTAGGATTCAGAAGTCCCTCCAGATGCTTGCTTCAAATATACTTACTACTCAGTAAATGATAGGAGTACTGCTCTGTAAATGCATGAAAAAACAGTGATGGAGAAATCTGATGCTTGTGTACCCAATGATGCAGGATCAGTCCTCCTTGGTGAACACGCTGGAATTTCCCAATAATTTGCAGTATCCCACAACATTCAGAAAACCAAATTCCTTGGAAATTCACGACACAAGGTAAAGAACAAAAACCCATGACGTTTTGCTTTGCAATTTGCAGGTAGGGCTCTGCTGTCCTTGCTGCTGCTGCTGGATTTGAAAGAAAAAAACCTGTGTACGATGTACGTACGCCGGCTGCATCCTTGTACAGCCATGTTCATGTGAGAGCGGAAAAAACTGCCTTCCAGCTCAGCTCTGCAGGGCTGAATTGCCGCCTGGATCCTGCGGCCGCCATGTTT] consensusID : consensus_4672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence [GATGGCAAACGCTAGGTCACAGTTTGTACATGATCCTTCTCTGCTTGTTTCCTCAAAAAATGGGCTTGCTACCTCTATTTTGGTTGGCGCAGTATTCCATCAAATATACATGTTTCACAAGGAGATATTTCTGGACTATGTGCACCATGATATCACCAGGAAGTGGGCTTTGATATACTTCAAGCTGCTTTTGTTGATCATGGCGAAGGAAACCCTTGTGTATTTCAACTTTATCTGAGTTTTATCTCTTGCAGAGGGACATCTATGTACTCATCCATACACCAGAAAAAATGACGGTGGTGGATAAAATTCTGGCGCCTTGTTCTCTTCATGGACATTTTCAACATTTTTCCTTCTCAACTTCATTTGTATATGCACTTGAAAGAGGATGATTAGTGATCAATGAAGCAATTAGTTCGACTTCATTCTTGTTTATAATAATAGCACTGATATGAACTGTTTGGTATTTGCTAGCACGATGCAGCCATATGGATTTTGTTTTCCATGTATGAATTATCATCTTATGTGCATATATTTCTCCTTTTGGAGGCTTGAGCTGCCCAAAAAAAAAA] [+] EMBL BI805239 [GATGGCAAACGCTAGGTCACAGTTTGTACATGATCCTTCTCTGCTTGTTTCCTCAAAAAATGGGCTTGCTACCTCTATTTTGGTTGGCGCAGTATTCCATCAAATATACATGTTTCACAAGGAGATATTTCTGGACTATGTGCACCATGATATCACCAGGAAGTGGGCTTTGATATACTTCAAGCTGCTTTTGTTGATCATGGCGAAGGAAACCCTTGTGTATTTCAACTTTATCTGAGTTTTATCTCTTGCAGAGGGACATCTATGTACTCATCCATACACCAGAAAAAATGACGGTGGTGGATAAAATTCTGGCGCCTTGTTCTCTTCATGGACATTTTCAACATTTTTCCTTCTCAACTTCATTTGTATATGCACTTGAAAGAGGATGATTAGTGATCAATGAAGCAATTAGTTCGACTTCATTCTTGTTTATAATAATAGCACTGATATGAACTGTTTGGTATTTGCTAGCACGATGCAGCCATATGGATTTTGTTTTCCATGTATGAATTATCATCTTATGTGCATATATTTCTCCTTTTGGAGGCTTGAGCTGCCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4672#0 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATCGCCATGGCGTCGCGACTCGTGGCCCG 60 consensus_4672#1 ------------------------------------------------------------ consensus_4672#0 GTCGAGGAGAGGCCTAGCGCTCGCCCTCTCCCGCGCCGGCGCCGGCGCCCCGTCGCGGCC 120 consensus_4672#1 ------------------------------------------------------------ consensus_4672#0 CTCCCCTCCTGGCCTCGGCAAGACTCTGGGGTATGAGCCAACATCACATCTCCATGGTGC 180 consensus_4672#1 ------------------------------------------------------------ consensus_4672#0 TCAGTTTTTACCTTGTTGGTTTTCAACTATTGCATCTAATGGATCTCACATGCAAAAGGC 240 consensus_4672#1 ------------------------------------------------------------ consensus_4672#0 ACAGGAGACATGTAAGCCAGTTGCTGGAATGGAACACTCTGATGCACTGAAAGTAATGGA 300 consensus_4672#1 ------------------------------------------------------------ consensus_4672#0 AGGAACCTCTCCTAAAGTTGTGGCATTCAGCCCACTAGAAGCAGCTATCACTAAACCTAG 360 consensus_4672#1 ------------------------------------------------------------ consensus_4672#0 AAGCAGTCCCTTGACAATTGAAAGTTCTAAAGTAAAGCGATCAGAGATTGCAA-CGCTAG 419 consensus_4672#1 ---------------------------------------------GATGGCAAACGCTAG 15 *** **** ****** consensus_4672#0 -TCACATTTT--ACATGATCCCTTCTCTGCTTGTTTCCTCAAAAAATGGGCTTGCTACCT 476 consensus_4672#1 GTCACAGTTTGTACATGATCC-TTCTCTGCTTGTTTCCTCAAAAAATGGGCTTGCTACCT 74 ***** *** ********* ************************************** consensus_4672#0 CTATTTTGGTTGGCGCAGTATTCCATCAAATATACATGTTTCACAAGGAGATATTTCTGG 536 consensus_4672#1 CTATTTTGGTTGGCGCAGTATTCCATCAAATATACATGTTTCACAAGGAGATATTTCTGG 134 ************************************************************ consensus_4672#0 ACTATGTGCACCATGATATCACCAGGAAGTGGGCTTTGATATACTTCAAGCTGCTTTTGT 596 consensus_4672#1 ACTATGTGCACCATGATATCACCAGGAAGTGGGCTTTGATATACTTCAAGCTGCTTTTGT 194 ************************************************************ consensus_4672#0 TGATCATGGCGAAGGAAACCATTGTGTATTTCAACTTTATCTGAGTTTTATCTCTTGCAG 656 consensus_4672#1 TGATCATGGCGAAGGAAACCCTTGTGTATTTCAACTTTATCTGAGTTTTATCTCTTGCAG 254 ******************** *************************************** consensus_4672#0 AGGGACAATCTATGTACTCATCCATACACCAGAAAAAATGACGGTGGTGGATAAAATTCT 716 consensus_4672#1 AGGGACA-TCTATGTACTCATCCATACACCAGAAAAAATGACGGTGGTGGATAAAATTCT 313 ******* **************************************************** consensus_4672#0 GGCGCCTTGTTCTCTTCATGGACATTTTCAACATTTTTCCTTCTCAACTTCATTTGTATA 776 consensus_4672#1 GGCGCCTTGTTCTCTTCATGGACATTTTCAACATTTTTCCTTCTCAACTTCATTTGTATA 373 ************************************************************ consensus_4672#0 TGCACTTGAAAGAGGATGATTAGTGATCAATGAAGCAATTAGTTCGACTTCATTCTTGTT 836 consensus_4672#1 TGCACTTGAAAGAGGATGATTAGTGATCAATGAAGCAATTAGTTCGACTTCATTCTTGTT 433 ************************************************************ consensus_4672#0 TATAATAATAGCAACTGATATGAACTGTTTGGTATTTGCTAGCACGATGCAGCCATATGG 896 consensus_4672#1 TATAATAATAGCA-CTGATATGAACTGTTTGGTATTTGCTAGCACGATGCAGCCATATGG 492 ************* ********************************************** consensus_4672#0 ATTTTGTTTTCCATGTATGAATTATCATCTTATGTGCATATATTTCTCCTTTTGGAGGCT 956 consensus_4672#1 ATTTTGTTTTCCATGTATGAATTATCATCTTATGTGCATATATTTCTCCTTTTGGAGGCT 552 ************************************************************ consensus_4672#0 TGAGCTGCCATTATTTTTTTGCGAATCCTTCAGACTCCAGTCCTACATGAATCCAGCGCT 1016 consensus_4672#1 TGAGCTGCCCAAAAAAAAAA---------------------------------------- 572 ********* * consensus_4672#0 ATGCTCCTTTTTGGAGGTTTTGTTACTGCAGAGATGATTGTGTGTTTAACTTTATTGATT 1076 consensus_4672#1 ------------------------------------------------------------ consensus_4672#0 GGTTTGATTGTTTCTGCAGATGTTACAAAGATTGGCCGGTTGCAGTTTGTTTGAAATGCT 1136 consensus_4672#1 ------------------------------------------------------------ consensus_4672#0 AGGATTCAGAAGTCCCTCCAGATGCTTGCTTCAAATATACTTACTACTCAGTAAATGATA 1196 consensus_4672#1 ------------------------------------------------------------ consensus_4672#0 GGAGTACTGCTCTGTAAATGCATGAAAAAACAGTGATGGAGAAATCTGATGCTTGTGTAC 1256 consensus_4672#1 ------------------------------------------------------------ consensus_4672#0 CCAATGATGCAGGATCAGTCCTCCTTGGTGAACACGCTGGAATTTCCCAATAATTTGCAG 1316 consensus_4672#1 ------------------------------------------------------------ consensus_4672#0 TATCCCACAACATTCAGAAAACCAAATTCCTTGGAAATTCACGACACAAGGTAAAGAACA 1376 consensus_4672#1 ------------------------------------------------------------ consensus_4672#0 AAAACCCATGACGTTTTGCTTTGCAATTTGCAGGTAGGGCTCTGCTGTCCTTGCTGCTGC 1436 consensus_4672#1 ------------------------------------------------------------ consensus_4672#0 TGCTGGATTTGAAAGAAAAAAACCTGTGTACGATGTACGTACGCCGGCTGCATCCTTGTA 1496 consensus_4672#1 ------------------------------------------------------------ consensus_4672#0 CAGCCATGTTCATGTGAGAGCGGAAAAAACTGCCTTCCAGCTCAGCTCTGCAGGGCTGAA 1556 consensus_4672#1 ------------------------------------------------------------ consensus_4672#0 TTGCCGCCTGGATCCTGCGGCCGCCATGTTT 1587 consensus_4672#1 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||