cluster # 4686

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Oryza sativa
cluster # 4686 cluster # 4686 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4686#0 length = 644 sequences # 1

consensus_4686#1 length = 380 sequences # 1
consensus_4686#2 length = 102 sequences # 1

consensusID : consensus_4686#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [GGGGCATTAGCATTGACATTCTCCNAAGGAAAAGCTTTTGGTAAAAATTGGTTGCGAAAGTTAGGGCCCGCAAGCAAGCGTCAACGCGCGTGTGGGTGCTCGCCGCGGTGCTCGTGGCGTGCGCGATCGCCGTCCGGCTCTGCCCGCGCCGGCCACGCCAGCGGCCACGCCGCCGCCGCCGACGAGGAGGACGCCGCCGCCGCGGCGCCGGCGCCGTCGAAGGGGCACGGGTGCAACCCGCTCAAGGACAAGACGTGCCGGCACGACGACCGCCACGATCCGGAGAACCAGGAGGAGGAAGGGGGGTTCGGCGTCCGGCTGCCGTCCTTCCCGTCCCTCACCGGAGACGACGGCGACGACGACGAGCTGCCGTCGTTCGACACCCACATGACCATCCTCGGCCACTGAAAACAAGGCTGCCATGGCTGCACCATCTTCATCGTCATCATCATCATCTTCTTAACTGACTACGTAGCTCTGTTGATTGGTTCTTGCATTTTGCATTGCTTGCTCTGTATCGAGAAGAGGGGAAAAAAAGGTTGAAAACAAGATGGAAAATGTCATGTAGAATTGTTGCTAGAGTGTGATTCTCCTAGCTGATATCTCCAAAATGTTGTTGTTAATATATCGGTATTGTTCAAAAA]

[+] EMBL AU082495             [GGGGCATTAGCATTGACATTCTCCNAAGGAAAAGCTTTTGGTAAAAATTGGTTGCGAAAGTTAGGGCCCGCAAGCAAGCGTCAACGCGCGTGTGGGTGCTCGCCGCGGTGCTCGTGGCGTGCGCGATCGCCGTCCGGCTCTGCCCGCGCCGGCCACGCCAGCGGCCACGCCGCCGCCGCCGACGAGGAGGACGCCGCCGCCGCGGCGCCGGCGCCGTCGAAGGGGCACGGGTGCAACCCGCTCAAGGACAAGACGTGCCGGCACGACGACCGCCACGATCCGGAGAACCAGGAGGAGGAAGGGGGGTTCGGCGTCCGGCTGCCGTCCTTCCCGTCCCTCACCGGAGACGACGGCGACGACGACGAGCTGCCGTCGTTCGACACCCACATGACCATCCTCGGCCACTGAAAACAAGGCTGCCATGGCTGCACCATCTTCATCGTCATCATCATCATCTTCTTAACTGACTACGTAGCTCTGTTGATTGGTTCTTGCATTTTGCATTGCTTGCTCTGTATCGAGAAGAGGGGAAAAAAAGGTTGAAAACAAGATGGAAAATGTCATGTAGAATTGTTGCTAGAGTGTGATTCTCCTAGCTGATATCTCCAAAATGTTGTTGTTAATATATCGGTATTGTTCAAAAA]




>consensus_4686#0
GGGGCATTAGCATTGACATTCTCCNAAGGAAAAGCTTTTGGTAAAAATTGGTTGCGAAAG
TTAGGGCCCGCAAGCAAGCGTCAACGCGCGTGTGGGTGCTCGCCGCGGTGCTCGTGGCGT
GCGCGATCGCCGTCCGGCTCTGCCCGCGCCGGCCACGCCAGCGGCCACGCCGCCGCCGCC
GACGAGGAGGACGCCGCCGCCGCGGCGCCGGCGCCGTCGAAGGGGCACGGGTGCAACCCG
CTCAAGGACAAGACGTGCCGGCACGACGACCGCCACGATCCGGAGAACCAGGAGGAGGAA
GGGGGGTTCGGCGTCCGGCTGCCGTCCTTCCCGTCCCTCACCGGAGACGACGGCGACGAC
GACGAGCTGCCGTCGTTCGACACCCACATGACCATCCTCGGCCACTGAAAACAAGGCTGC
CATGGCTGCACCATCTTCATCGTCATCATCATCATCTTCTTAACTGACTACGTAGCTCTG
TTGATTGGTTCTTGCATTTTGCATTGCTTGCTCTGTATCGAGAAGAGGGGAAAAAAAGGT
TGAAAACAAGATGGAAAATGTCATGTAGAATTGTTGCTAGAGTGTGATTCTCCTAGCTGA
TATCTCCAAAATGTTGTTGTTAATATATCGGTATTGTTCAAAAA

consensusID : consensus_4686#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence

                              [GCATCGCATTGACATCTCCGAGGAAAGCTTTGGTATATATTGTTGCGAAGTAGNGGCCGCCATGGCAGCGTCGACGCGCGTGTGGGTGCTCGCCGCGGTGCTCGTGGCGTGCGCGATCGNCGTCCGCTCTGCCCGCGCCGGCCACGCCAGCGGCCACGCGTCGCCGCCGACGAGGAGGACGCCGCCGCCGCGGCCCGGCGCCGTCGAAGGGGCACGGGTGCAACGCTCAAGGACAAGACGTGCCGGCACGACGACCGCACGATCCGGAGAACCAGGAGGAGGAAGGGGGGTTCGGCGTCCGGCTGCCGTCCTTCCCGTCCCTCACCGGAGACGACGGCGACGACGACGAGNTGCCGTCGTTCGACAACCACATGACCATC]

[+] EMBL C73438               [GCATCGCATTGACATCTCCGAGGAAAGCTTTGGTATATATTGTTGCGAAGTAGNGGCCGCCATGGCAGCGTCGACGCGCGTGTGGGTGCTCGCCGCGGTGCTCGTGGCGTGCGCGATCGNCGTCCGCTCTGCCCGCGCCGGCCACGCCAGCGGCCACGCGTCGCCGCCGACGAGGAGGACGCCGCCGCCGCGGCCCGGCGCCGTCGAAGGGGCACGGGTGCAACGCTCAAGGACAAGACGTGCCGGCACGACGACCGCACGATCCGGAGAACCAGGAGGAGGAAGGGGGGTTCGGCGTCCGGCTGCCGTCCTTCCCGTCCCTCACCGGAGACGACGGCGACGACGACGAGNTGCCGTCGTTCGACAACCACATGACCATC]




>consensus_4686#1
GCATCGCATTGACATCTCCGAGGAAAGCTTTGGTATATATTGTTGCGAAGTAGNGGCCGC
CATGGCAGCGTCGACGCGCGTGTGGGTGCTCGCCGCGGTGCTCGTGGCGTGCGCGATCGN
CGTCCGCTCTGCCCGCGCCGGCCACGCCAGCGGCCACGCGTCGCCGCCGACGAGGAGGAC
GCCGCCGCCGCGGCCCGGCGCCGTCGAAGGGGCACGGGTGCAACGCTCAAGGACAAGACG
TGCCGGCACGACGACCGCACGATCCGGAGAACCAGGAGGAGGAAGGGGGGTTCGGCGTCC
GGCTGCCGTCCTTCCCGTCCCTCACCGGAGACGACGGCGACGACGACGAGNTGCCGTCGT
TCGACAACCACATGACCATC

consensusID : consensus_4686#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 102
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTAGGAGAATCACACTCTAGCAACAATTCTACATGACATTTTCCATCTTGTTTTCAACCTTTTTTTCCCCTTGGCTCGTCCTCT]

[+] EMBL CA760622             [TTTTTTTTTTTTTTTTTTTTAGGAGAATCACACTCTAGCAACAATTCTACATGACATTTTCCATCTTGTTTTCAACCTTTTTTTCCCCTTGGCTCGTCCTCT]




>consensus_4686#2
TTTTTTTTTTTTTTTTTTTTAGGAGAATCACACTCTAGCAACAATTCTACATGACATTTT
CCATCTTGTTTTCAACCTTTTTTTCCCCTTGGCTCGTCCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4686#0      GGGGCATTAGCATTGACATTCTCCNAAGGAAAAGCTTTTGGTAAAAATTGGTTGCGAAAG 60
consensus_4686#1      ---GCATC-GCATTGACAT-CTCCGAGGAAAG---CTTTGGTATATATTG-TTGCGAA-G 50
consensus_4686#2      ------------------------------------TTTTTTTTTTTTTTTTTTTTAG-- 22
                                                          ***  *     **  **   *   

consensus_4686#0      TTAGGGCCCGCAAGCAAGCGTCAACGCGCGTGTGGGTGCTCGCCGCGGTGCTCGTGGCGT 120
consensus_4686#1      TAGNGGCCGCCATGGCAGCGTCGACGCGCGTGTGGGTGCTCGCCGCGGTGCTCGTGGCGT 110
consensus_4686#2      --GAGAATCACACTCTAGCAACAATTC-TACATGA-CATTTTCCATCTTGTTTTCAACCT 78
                          *     **    ***  * *  *     **     *  **    ** *     * *

consensus_4686#0      GCGCGATCGCCGTCCGGCTCTGCCCGCGCCGGCCACGCCAGCGGCCACGCCGCCGCCGCC 180
consensus_4686#1      GCGCGATCGNCGTCCG-CTCTGCCCGCGCCGGCCACGCCAGCGGCCACGC-GTCGCCGCC 168
consensus_4686#2      TT---TTTTCCCCTTGGCTCGTCCTCT--------------------------------- 102
                            *   *    * ***  **                                    

consensus_4686#0      GACGAGGAGGACGCCGCCGCCGCGGCGCCGGCGCCGTCGAAGGGGCACGGGTGCAACCCG 240
consensus_4686#1      GACGAGGAGGACGCCGCCGCCGCGGC-CCGGCGCCGTCGAAGGGGCACGGGTGCAA--CG 225
consensus_4686#2      ------------------------------------------------------------
                                                                                  

consensus_4686#0      CTCAAGGACAAGACGTGCCGGCACGACGACCGCCACGATCCGGAGAACCAGGAGGAGGAA 300
consensus_4686#1      CTCAAGGACAAGACGTGCCGGCACGACGACCGC-ACGATCCGGAGAACCAGGAGGAGGAA 284
consensus_4686#2      ------------------------------------------------------------
                                                                                  

consensus_4686#0      GGGGGGTTCGGCGTCCGGCTGCCGTCCTTCCCGTCCCTCACCGGAGACGACGGCGACGAC 360
consensus_4686#1      GGGGGGTTCGGCGTCCGGCTGCCGTCCTTCCCGTCCCTCACCGGAGACGACGGCGACGAC 344
consensus_4686#2      ------------------------------------------------------------
                                                                                  

consensus_4686#0      GACGAGCTGCCGTCGTTCGACACCCACATGACCATCCTCGGCCACTGAAAACAAGGCTGC 420
consensus_4686#1      GACGAGNTGCCGTCGTTCGACAACCACATGACCATC------------------------ 380
consensus_4686#2      ------------------------------------------------------------
                                                                                  

consensus_4686#0      CATGGCTGCACCATCTTCATCGTCATCATCATCATCTTCTTAACTGACTACGTAGCTCTG 480
consensus_4686#1      ------------------------------------------------------------
consensus_4686#2      ------------------------------------------------------------
                                                                                  

consensus_4686#0      TTGATTGGTTCTTGCATTTTGCATTGCTTGCTCTGTATCGAGAAGAGGGGAAAAAAAGGT 540
consensus_4686#1      ------------------------------------------------------------
consensus_4686#2      ------------------------------------------------------------
                                                                                  

consensus_4686#0      TGAAAACAAGATGGAAAATGTCATGTAGAATTGTTGCTAGAGTGTGATTCTCCTAGCTGA 600
consensus_4686#1      ------------------------------------------------------------
consensus_4686#2      ------------------------------------------------------------
                                                                                  

consensus_4686#0      TATCTCCAAAATGTTGTTGTTAATATATCGGTATTGTTCAAAAA 644
consensus_4686#1      --------------------------------------------
consensus_4686#2      --------------------------------------------