These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_469#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence [ATCTCCCTAGATTTCCCCAATATTAACTCTTTGTATTGTGATCAATTATATGCTTCCAGGTTATACTGTCTGGGACAGCTCTCCCCGTACGATTTACATCCATTGCTACGATGTAGTCCTGCTGCTGTAGAAGTAAATATGACACCTGACTTGTGGTCCCATGTTTTTTTTTTCCTCCTCTCTCTTTGCAGAGGTCAAGGTCGTCCACCCGGCGGACAGGTCGGCCCGCCACCGCCGGCGAGCCCCGACCGCCACTCCCGGCGCTCCCCGCACCGCTCCTCCGGCTCCGGCAAGAAGCGCTCCTCCTCCGACCGTACGACGACCTGCCCCTCCCCCGCCTCCCCGCCCGCGTCGCCCACGAGCGGCCGAGCACGCCCACGCGAAGCGCGGCCGACGCGCGGTCCAAGGCCAAGGGCAGCGTCTTCTCCCGCATCAGCTTCCCCGGCGGCGACGGCAACCCTTCCGACGCCAAGCGCAGCCGCAGGTCCTCCTCCGACAAGCCCCCGGCGTCCTCTTCTTCCTCCTCCAAGAAAGCAGCTGCCGCTGTGGCGGAGGACAACGACGGCCGCCACCACCGCCGCCA] [+] EMBL BI811209 [ATCTCCCTAGATTTCCCCAATATTAACTCTTTGTATTGTGATCAATTATATGCTTCCAGGTTATACTGTCTGGGACAGCTCTCCCCGTACGATTTACATCCATTGCTACGATGTAGTCCTGCTGCTGTAGAAGTAAATATGACACCTGACTTGTGGTCCCATGTTTTTTTTTTCCTCCTCTCTCTTTGCAGAGGTCAAGGTCGTCCACCCGGCGGACAGGTCGGCCCGCCACCGCCGGCGAGCCCCGACCGCCACTCCCGGCGCTCCCCGCACCGCTCCTCCGGCTCCGGCAAGAAGCGCTCCTCCTCCGACCGTACGACGACCTGCCCCTCCCCCGCCTCCCCGCCCGCGTCGCCCACGAGCGGCCGAGCACGCCCACGCGAAGCGCGGCCGACGCGCGGTCCAAGGCCAAGGGCAGCGTCTTCTCCCGCATCAGCTTCCCCGGCGGCGACGGCAACCCTTCCGACGCCAAGCGCAGCCGCAGGTCCTCCTCCGACAAGCCCCCGGCGTCCTCTTCTTCCTCCTCCAAGAAAGCAGCTGCCGCTGTGGCGGAGGACAACGACGGCCGCCACCACCGCCGCCA] consensusID : consensus_469#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 329 fasta sequence [AAATCGAGATCGCGATCGAGACCAAGAGCGGGATCGGGATCGGGAGCGAGACAGGGAAAGAGAATCTCGAAGGGAAGCGAGGGAATCATCCGGAGCCAATAACGATAGTACTACCTCAATGAGGCCGAAGGCTAGGTCAAGGTCGTCGCAGCCGGCGGACAGGTCGGCGCCGCCACCGCCGGCGAGCCCCGACCGCCACTCCCGGCGCTCCCCGCACCGCTCCTCCGGCTCCGGCAAGAAGCGCTCCTCCTCCGACCGCTACGACGACCTGCCCCTCCCGCCGCCTCCGCCGCCCGCGTCGCGCCACGAGGCGGCCGAGCACGCCCACG] [+] EMBL AU184825 [AAATCGAGATCGCGATCGAGACCAAGAGCGGGATCGGGATCGGGAGCGAGACAGGGAAAGAGAATCTCGAAGGGAAGCGAGGGAATCATCCGGAGCCAATAACGATAGTACTACCTCAATGAGGCCGAAGGCTAGGTCAAGGTCGTCGCAGCCGGCGGACAGGTCGGCGCCGCCACCGCCGGCGAGCCCCGACCGCCACTCCCGGCGCTCCCCGCACCGCTCCTCCGGCTCCGGCAAGAAGCGCTCCTCCTCCGACCGCTACGACGACCTGCCCCTCCCGCCGCCTCCGCCGCCCGCGTCGCGCCACGAGGCGGCCGAGCACGCCCACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_469#0 ATCTCCCTAGATTTCCCCAATATTAACTCTTTGTATTGTGATCAATTATATGCTTCCAGG 60 consensus_469#1 ---------------------------------------------------------AAA 3 * consensus_469#0 TTATACTGTCTGGGACAGCTCTCCCCGTACGATTTACATCCATTGCTACGATGTAGTCCT 120 consensus_469#1 TCGAG--ATCGCGATCGAGACCAAGAGCGGGATCGGGATCGGGAGCGA-GACAGGGAAAG 60 * ** * * * * *** *** ** * ** * consensus_469#0 GCTGCTGTAGAAGTAAATATGACACCTGACTTGTGGTCCCATGTTTTTTTTTTCCTCCTC 180 consensus_469#1 AGAATCTCGAAGGGAAGCGAGGGAATCATCCGGAGCCAATAACGATAGTACTACCTCAAT 120 * * ** * * * * * * * * * **** consensus_469#0 TCTCTTTGCAG--AGGTCAAGGTCGTC-CACCCGGCGGACAGGTCGGC-CCGCCACCGCC 236 consensus_469#1 GAGGCCGAAGGCTAGGTCAAGGTCGTCGCAGCCGGCGGACAGGTCGGCGCCGCCACCGCC 180 * ************** ** ***************** *********** consensus_469#0 GGCGAGCCCCGACCGCCACTCCCGGCGCTCCCCGCACCGCTCCTCCGGCTCCGGCAAGAA 296 consensus_469#1 GGCGAGCCCCGACCGCCACTCCCGGCGCTCCCCGCACCGCTCCTCCGGCTCCGGCAAGAA 240 ************************************************************ consensus_469#0 GCGCTCCTCCTCCGACCG-TACGACGACCTGCCCCTCCC-CCGCCTCC-CCGCCCGCGTC 353 consensus_469#1 GCGCTCCTCCTCCGACCGCTACGACGACCTGCCCCTCCCGCCGCCTCCGCCGCCCGCGTC 300 ****************** ******************** ******** *********** consensus_469#0 GC-CCACGAG-CGGCCGAGCACGCCCACGCGAAGCGCGGCCGACGCGCGGTCCAAGGCCA 411 consensus_469#1 GCGCCACGAGGCGGCCGAGCACGCCCACG------------------------------- 329 ** ******* ****************** consensus_469#0 AGGGCAGCGTCTTCTCCCGCATCAGCTTCCCCGGCGGCGACGGCAACCCTTCCGACGCCA 471 consensus_469#1 ------------------------------------------------------------ consensus_469#0 AGCGCAGCCGCAGGTCCTCCTCCGACAAGCCCCCGGCGTCCTCTTCTTCCTCCTCCAAGA 531 consensus_469#1 ------------------------------------------------------------ consensus_469#0 AAGCAGCTGCCGCTGTGGCGGAGGACAACGACGGCCGCCACCACCGCCGCCA 583 consensus_469#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||