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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4695#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1122 fasta sequence
[TCAAAGCCCGCGTGTTCTCCCGAACAGCCACCGCCGCCGCCGCCGCCGCCGATCCATGGCGACCTCGACGGCGGCGCCCAGGCACAGCTGCGCGAAGCTCTCGGTGGCGGTGGAGGACCCCAAGGCGGGCGGCGGCGGAGCCGTCTTCGTGAAGGCCACGTGGCACCCCACGCGCTTCTCCCTCGCCGTCACCGACGGCGGCGCCGCGTGGGTCGCCCAGGCCTCCGACGCCGAGGTGCGCCTCCGCGCCGAGCAGTGGGACCAGCCCGTCGCCGACTACCTCGCCCTCGCCGAGCGCTACCTCGCCTTCCAGCAGCCCTCCTCCACCTACTCCTTCCACGACGCCGCCAACGGCAATCGTAGGCTGTCATGGACATTTGAGAAACAAGGCACCAAGTTAGAATGGCGATGGAAACTGCAGCCTGCACCTAACACTCAGCAGACTATAGCTGAGATCTTGGATTTTCTTATGGATGCAAATATACGCTTGAGCGAAGAGGTTGTTAGGAAAACACAATCCTTTGACAAGTTGAAACAAGAATCTGAGAAGTGCTTGCAACAAAGTGAAAGATTTAACATTGAGAAAGCTGAGTTCGAACAATCCACATTTTCAAAGTTTGTGGCTGTCTTAAATTCGAAGAAAGCCAAGCTCAGACAACTCAAGGACAAACTCACAGAATTTGAATCTGCTGACAAGGCTCCAAAGGAGGAGGATGAGAACTCCACTGATAAGACAGAGCTTTTTGAGGAAGCAAGTGACAAAGATGCAAGCGTTAATGATGAACCCTCTGAGACTGGTGGCGGCGATCTTCATAGCTCTCCTGAGAAAACTGCAGCCACCTCCAGAGGGGGGAGGGGTCGCAAGAGGACTAGAAAATAGCCTGAACAAGCAACCTAACTGCTAGACTGAATATGACAGTATAACAAGACCTACATGCGAATTCTTAATGTTAAGGATATCAACAGGACCTACATGGGAGTTCTTAATATCCTTAACACTTAATCCATGTGATATCCTTAACACTTAATCCATGTGATGCATCTGTCATGCAACTAATTTTCATTTCGTCAAGTGTGTCAATCATGTACCTTGTGAACATTTAAGTGCATGTGGAGCTAAAC]
[+] EMBL AK071772 [TCAAAGCCCGCGTGTTCTCCCGAACAGCCACCGCCGCCGCCGCCGCCGCCGATCCATGGCGACCTCGACGGCGGCGCCCAGGCACAGCTGCGCGAAGCTCTCGGTGGCGGTGGAGGACCCCAAGGCGGGCGGCGGCGGAGCCGTCTTCGTGAAGGCCACGTGGCACCCCACGCGCTTCTCCCTCGCCGTCACCGACGGCGGCGCCGCGTGGGTCGCCCAGGCCTCCGACGCCGAGGTGCGCCTCCGCGCCGAGCAGTGGGACCAGCCCGTCGCCGACTACCTCGCCCTCGCCGAGCGCTACCTCGCCTTCCAGCAGCCCTCCTCCACCTACTCCTTCCACGACGCCGCCAACGGCAATCGTAGGCTGTCATGGACATTTGAGAAACAAGGCACCAAGTTAGAATGGCGATGGAAACTGCAGCCTGCACCTAACACTCAGCAGACTATAGCTGAGATCTTGGATTTTCTTATGGATGCAAATATACGCTTGAGCGAAGAGGTTGTTAGGAAAACACAATCCTTTGACAAGTTGAAACAAGAATCTGAGAAGTGCTTGCAACAAAGTGAAAGATTTAACATTGAGAAAGCTGAGTTCGAACAATCCACATTTTCAAAGTTTGTGGCTGTCTTAAATTCGAAGAAAGCCAAGCTCAGACAACTCAAGGACAAACTCACAGAATTTGAATCTGCTGACAAGGCTCCAAAGGAGGAGGATGAGAACTCCACTGATAAGACAGAGCTTTTTGAGGAAGCAAGTGACAAAGATGCAAGCGTTAATGATGAACCCTCTGAGACTGGTGGCGGCGATCTTCATAGCTCTCCTGAGAAAACTGCAGCCACCTCCAGAGGGGGGAGGGGTCGCAAGAGGACTAGAAAATAGCCTGAACAAGCAACCTAACTGCTAGACTGAATATGACAGTATAACAAGACCTACATGCGAATTCTTAATGTTAAGGATATCAACAGGACCTACATGGGAGTTCTTAATATCCTTAACACTTAATCCATGTGATATCCTTAACACTTAATCCATGTGATGCATCTGTCATGCAACTAATTTTCATTTCGTCAAGTGTGTCAATCATGTACCTTGTGAACATTTAAGTGCATGTGGAGCTAAAC]
consensusID : consensus_4695#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence
[TTAGGGACAACATGGATTCCGTTGATGTCATAATATCCTAAATATGAGCACCATTGACGATATGATACATGATTTTCAAATGGTGATGAAATTATGTTAAACACAAGTAGTACTGCTTTACAGGCATGTCTTGGTTTATGAGGAGACCATTTCATGTCCTTGCTTGTTTTGTACCAAACACGTTTTTCTCCTTTTGTTTCCCGAGTTATTGATTATTTATTTTTCCATGTAGCTGTCATGGACATTTGAGAAACAAGGCACCAAGTTAGAATGGCGATGGAAACTGCAGCCTGCACCTAACACTCAGCAGACTATAGCTGAGATCTTGGATTTTCTTATGGATGCAAATATACGCTTGAGCGTATGTCACTTTCCTTTTCCATTCCATGGATATAATGCTATAATATTTTCTATGGAAGTAGTGAACTGTTGTCAAGATTCCGATGAACTTGATTCGACCTCACTGCAACCTACCACCAAGTCATCTTCATATATGATTTACTTGACCTGAATGACTAAACTGTTGCCTTCCCTTCATTTTTCAGGAAGAGGTTGTTAGGAAAACACAATCCTTTGACAAGTTGAAACAAGAATCTGAGAAGTGCTTGCAACAAAGTGAAAGATTTAACATTGAGAAAGCTGAGTT]
[-] EMBL CF308800 [TTAGGGACAACATGGATTCCGTTGATGTCATAATATCCTAAATATGAGCACCATTGACGATATGATACATGATTTTCAAATGGTGATGAAATTATGTTAAACACAAGTAGTACTGCTTTACAGGCATGTCTTGGTTTATGAGGAGACCATTTCATGTCCTTGCTTGTTTTGTACCAAACACGTTTTTCTCCTTTTGTTTCCCGAGTTATTGATTATTTATTTTTCCATGTAGCTGTCATGGACATTTGAGAAACAAGGCACCAAGTTAGAATGGCGATGGAAACTGCAGCCTGCACCTAACACTCAGCAGACTATAGCTGAGATCTTGGATTTTCTTATGGATGCAAATATACGCTTGAGCGTATGTCACTTTCCTTTTCCATTCCATGGATATAATGCTATAATATTTTCTATGGAAGTAGTGAACTGTTGTCAAGATTCCGATGAACTTGATTCGACCTCACTGCAACCTACCACCAAGTCATCTTCATATATGATTTACTTGACCTGAATGACTAAACTGTTGCCTTCCCTTCATTTTTCAGGAAGAGGTTGTTAGGAAAACACAATCCTTTGACAAGTTGAAACAAGAATCTGAGAAGTGCTTGCAACAAAGTGAAAGATTTAACATTGAGAAAGCTGAGTT]
consensusID : consensus_4695#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence
[GNACGGGACATGGGGNAGCGGTCCACATTNTNAAGTTTGAGGCTGGCTTNCATTCGAGNANAGNCTNGCTCTGCACCTCAGGGACNAACTCACAGNANNTGANTCTGCTGACANGGCTCCAANGNACNGAGGACTGNAGAACTCCACTGATAATACNGNGCTTTTTGNGGAAGCAAGTGACAANGNTGCNAGCGNTNANGGTGAACCCTNTGAGACTGGNGGCGGGGATCTTCATAGCTCTCCTGAGAAAACTGNAGCCACCTCCAGAGGGGGNAGGGGTCGCACGAGGACTANNAAANANCCTGAACAAGCAACCTAACTGCTAGACTGAATATGACAGTATAACATAGACCTACATGCGAATTCTTAATGCTANGGATATCAACAGGACCTACATGGGAGTTCTTANTATCCTTAACACTTAATCCATGTGATATCCTTAACACTTAATCCATGTGATGCATCTGTCATGCANCTAATTTTCATTTCGTGCANGTGTGTCAATCATGTACCTTGCGAACATNTAAGTGCATGTGGNGCTAAACCTTGAGTCCNACCCTGAGCAGAACAAC]
[+] EMBL CA764956 [GNACGGGACATGGGGNAGCGGTCCACATTNTNAAGTTTGAGGCTGGCTTNCATTCGAGNANAGNCTNGCTCTGCACCTCAGGGACNAACTCACAGNANNTGANTCTGCTGACANGGCTCCAANGNACNGAGGACTGNAGAACTCCACTGATAATACNGNGCTTTTTGNGGAAGCAAGTGACAANGNTGCNAGCGNTNANGGTGAACCCTNTGAGACTGGNGGCGGGGATCTTCATAGCTCTCCTGAGAAAACTGNAGCCACCTCCAGAGGGGGNAGGGGTCGCACGAGGACTANNAAANANCCTGAACAAGCAACCTAACTGCTAGACTGAATATGACAGTATAACATAGACCTACATGCGAATTCTTAATGCTANGGATATCAACAGGACCTACATGGGAGTTCTTANTATCCTTAACACTTAATCCATGTGATATCCTTAACACTTAATCCATGTGATGCATCTGTCATGCANCTAATTTTCATTTCGTGCANGTGTGTCAATCATGTACCTTGCGAACATNTAAGTGCATGTGGNGCTAAACCTTGAGTCCNACCCTGAGCAGAACAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4695#0 TCAAAGCCCGCGTGTTCTCCCGAACAGCCACCGCCGCCGCCGCCGCCGCCGATCCATGGC 60
consensus_4695#2 ------------------------------------------------------------
consensus_4695#1 ------------------------------------------------------------
consensus_4695#0 GACCTCGACGGCGGCGCCCAGGCACAGCTGCGCGAAGCTCTCGGTGGCGGTGGAGGACCC 120
consensus_4695#2 ------------------------------------------------------------
consensus_4695#1 ------------------------------------------------------------
consensus_4695#0 CAAGGCGGGCGGCGGCGGAGCCGTCTTCGTGAAGGCCACGTGGCACCCCACGCGCTTCTC 180
consensus_4695#2 ------------------------------------------------------------
consensus_4695#1 ------------------------------------------------------------
consensus_4695#0 CCTCGCCGTCACCGACGGCGGCGCCGCGTGGGTCGCCCAGGCCTCCGACGCCGAGGTGCG 240
consensus_4695#2 ------------------------------------------------------------
consensus_4695#1 ------------------------------------------------------------
consensus_4695#0 CCTCCGCGCCGAGCAGTGGGACCAGCCCGTCGCCGACTACCTCGCCCTCGCCGAGCGCTA 300
consensus_4695#2 ------------------------------------------------------------
consensus_4695#1 ------------------------------------------------------------
consensus_4695#0 CCTCGCCTTCCAGCAGCCCTCCTCCACCTACTCCTTCCACGACGCCGCCAACGGCAATCG 360
consensus_4695#2 ------------------------------------------------------------
consensus_4695#1 ------------------------------------------------------------
consensus_4695#0 TAGGCTGTCATGGACATTTGAGAAACAAGGCACCAAGTTAGAATGGCGATGGAAACTGCA 420
consensus_4695#2 ------------------------------------------------------------
consensus_4695#1 ------------------------------------------------------------
consensus_4695#0 GCCTGCACCTAACACTCAGCAGACTATAGCTGAGATCTTGGATTTTCTTATGGATGCAAA 480
consensus_4695#2 ------------------------------------------------------------
consensus_4695#1 ------------------------------------------------------------
consensus_4695#0 TATACGCTTGAGCGAAGAGGTTGTTAGGAAAACACAATCCTTTGACAAGTTGAAACAAGA 540
consensus_4695#2 ------------------------------------------------------------
consensus_4695#1 ---------------------------------------------------------TTA 3
consensus_4695#0 ATCTGAGAAGTGCTTGCAACAAAGTGAAAGATTTAACATTGAGAAAGCTGAGTTCGA-AC 599
consensus_4695#2 ----------------------------------------GNACGGGACATGGGGNA-GC 19
consensus_4695#1 GGGACAACATGGATTCCGTTGATGTCATAATATCCTAAATATGAGCACCATTGACGATAT 63
*
consensus_4695#0 AATCCAC-ATTTTCAAA-GTT--TGTGGCTGTCTTAAATTCGAAGAAAGCCAAGCT-CAG 654
consensus_4695#2 GGTCCAC-ATTNTNAA--GTT--TGAGGCTGGCTTNCATTCGAGNANAGNCTNGCT-CTG 73
consensus_4695#1 GATACATGATTTTCAAATGGTGATGAAATTATGTTAAACACAAGTAGTACTGCTTTACAG 123
* ** *** * ** * * ** * ** * * * * * * *
consensus_4695#0 ACAACTCAAGG---ACAAACTCACAGAATT-TGAATCTGCTGACAAGGCTCCAAAGGA-G 709
consensus_4695#2 -CACCTCAGGG---ACNAACTCACAGNANN-TGANTCTGCTGACANGGCTCCAANGNACN 128
consensus_4695#1 GCATGTCTTGGTTTATGAGGAGACCATTTCATGTCCTTGCTTGTTTTGTACCAAACACGT 183
** ** ** * * ** ** **** * ****
consensus_4695#0 GAGGAT--GAGAACTCCACTGATAAGACAGAGCTT-TTTGAGGAAGCAAGTGACAAAGAT 766
consensus_4695#2 GAGGACTGNAGAACTCCACTGATAATACNGNGCTT-TTTGNGGAAGCAAGTGACAANGNT 187
consensus_4695#1 TTTTCTCCTTTTGTTTCCCGAGTTATTGATTATTTATTTTTCCATGTAGCTGTCATGGAC 243
* * * * * ** *** * * * ** ** *
consensus_4695#0 GCAAGCGTTAATGATGAACCCTCTGAGACTGGTGGCGGCGATCTTCATAGCTCTCCTGAG 826
consensus_4695#2 GCNAGCGNTNANGGTGAACCCTNTGAGACTGGNGGCGGGGATCTTCATAGCTCTCCTGAG 247
consensus_4695#1 ATTTGAGA-AACAAGGCACCAAGTTAGAATGGCGATGGAAA-CTGCAGCCTGCACCT--- 298
* * * * *** * *** *** * ** * ** ** * ***
consensus_4695#0 AAAACTGCAGCCACCTCCAGAGGGGGGA--GGGGTCGCAAGAGGACTAGAAAATA-GCCT 883
consensus_4695#2 AAAACTGNAGCCACCTCCAGAGGGGGNA--GGGGTCGCACGAGGACTANNAAANA-NCCT 304
consensus_4695#1 AACACT-CAGCAGACTATAGCTGAGATCTTGGATTTTCTTATGGATGCAAATATACGCTT 357
** *** *** ** ** * * ** * * *** * * * * *
consensus_4695#0 GAAC--AAGCAACCTAACTGCTAGACT----GAATATGACAGTATAACA-AGACCTACAT 936
consensus_4695#2 GAAC--AAGCAACCTAACTGCTAGACT----GAATATGACAGTATAACATAGACCTACAT 358
consensus_4695#1 GAGCGTATGTCACTTTCCTTTTCCATTCCATGGATATAATGCTATAATA---TTTTCTAT 414
** * * * ** * ** * * * * **** * ***** * * **
consensus_4695#0 GCGAATTCTTAA-TGTTAAGGATATCAACAGGACCTACATGGGAGTTCTTAATATCCTTA 995
consensus_4695#2 GCGAATTCTTAA-TGCTANGGATATCAACAGGACCTACATGGGAGTTCTTANTATCCTTA 417
consensus_4695#1 GGAAGTAGTGAACTGTTGTCAAGATTCCGATGAACTTGATTCGACCTCACTGCAACCT-A 473
* * * * ** ** * * ** * ** ** ** ** ** * *** *
consensus_4695#0 ACACTTAATCCATGTGATATCCTTAACACTTAATCCATGTGATGCATCTGTCA---TGCA 1052
consensus_4695#2 ACACTTAATCCATGTGATATCCTTAACACTTAATCCATGTGATGCATCTGTCA---TGCA 474
consensus_4695#1 CCACCAAGTCATCTTCATATATGATTTACTTGACCTGAATGACTAAACTGTTGCCTTCCC 533
*** * ** * **** **** * * *** * **** * *
consensus_4695#0 ACTAATTTTCATTTCGT-CAAGTGTGTCAATCATGTACCTT------------GTGAACA 1099
consensus_4695#2 NCTAATTTTCATTTCGTGCANGTGTGTCAATCATGTACCTT------------GCGAACA 522
consensus_4695#1 TTCATTTTTCAGGAAGAGGTTGTTAGGAAAACACAATCCTTTGACAAGTTGAAACAAGAA 593
* ****** * ** * ** ** **** * *
consensus_4695#0 TTTAAGT-GCATGTGGAGCTAAAC----------------------------- 1122
consensus_4695#2 TNTAAGT-GCATGTGGNGCTAAACCTTGAGTCCNACCCTGAGCAGAACAAC-- 572
consensus_4695#1 TCTGAGAAGTGCTTGCAACAAAGTGAAAGATTTAACATTGAGAAAGCTGAGTT 646
* * ** * ** * **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||